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The map label for this gene is phaZ

Identifier: 110679177

GI number: 110679177

Start: 1802211

End: 1803497

Strand: Reverse

Name: phaZ

Synonym: RD1_1887

Alternate gene names: NA

Gene position: 1803497-1802211 (Counterclockwise)

Preceding gene: 110679181

Following gene: 110679173

Centisome position: 43.64

GC content: 57.19

Gene sequence:

>1287_bases
ATGCGATACATGGCGACATACGACCTCATGGAAACGATCCGTAACACGAACCAATGGCTTGGTGCTTCTGCATTGGCTAT
GGGATCATACCCTGCATTTGCACTGATACCCAACCCTGCATTTGCATGGATGACCGCATGGGGTGAAGTGACGGAGCGCA
CATTCCAGCGCATGATAGTAAAACCGGACTGGAATATTCCACCTGTCCCCTCGCTGGACGCGCAGGACCACCTTGTGTCG
ACCGAAGTGGTTGTGGAGAAGGATTTTGGCGATTTGCTGCATTTCGTTGTCGCCGACCGCCCCACGCCCAAGCGCAAGGT
GCTGCTGGTCGCACCGATGTCCGGGCATTATGCAACACTGCTGCGCTCGACAGTCATCAGCCTGCTGCCGGATGCTGATC
TCTACATCACGGACTGGCACAATGCGCGCGACATTCCTGTTAGCGCGGGCAAGTTCGACATCGAAGACTACACCCTGTAC
CTTGTGGATTTCCTGCGCGAGCTTGGGCCGGACACGCATGTGATTGCCGTCTGCCAGCCCGCCCCGCTGGCCTTGGCGGC
GACGGCCTATCTGGCCGAAGAAGACCCCAAGGCGCAGCCGCGCAGCCTGACGCTGATCGGTGGCCCGGTCGATCCGGATG
CAACGCCCACCGATGTGACCGATTTCGGTCGCCGTGTGACCATGGGCCAACTCGAAGAAATGATGATCCAGCGCGTTGGT
TTCAAATACCCCGGCGTCGGGCGCATGGTCTATCCCGGCCTTTTGCAGCTCAGTTCCTTCATCTCGATGAATGGTGAAAC
GCATACCAAAGCCTTCGTGAACCAGATCACGCGCGTCGCGCAAGGAGACGCCGAAGAGCACGACAAGCACAACCGGTTTT
ACGATGAATATCTGGCTGTGATGGACATGACGGCCGAATTCTATCTCTCGACCGTAGAGCGAATTTTCAAGAACCTCGAA
ATTGCCAAGAACGAGTTCGTGGTTGCCGGGAAAAAGGTTGATCTGGGCAAGATCACAACCGTCGCGGTGAAAACCGTCGA
AGGATCAAAGGATGATATTTCGGCGCCGGGGCAATGTGTGGCAGCACTGGATCTGTGCACGGGCCTTCCGGATGAGAAAA
AGGCGAGCCATCTTGAGGAGGGTGCGGGCCACTACGGTATTTTTGCGGGCAAAAGCTGGCGGCGCAACATCCGCCCGTTG
GTTCTGGACTTCATCGACGCCAACAGTGGCGACGACCAGCCGGAGCCGAAAACCAAAAAGGCTGCAAACAAGAACGCGGC
GGCCTGA

Upstream 100 bases:

>100_bases
TACTCCCTATGTTTGCACCTGCAGCATTACGTCGTTGGCTTTCAGGGGGCGATGCGACTGTCTGTCTCGGCAATCCGGGC
AATGGTTAAGGAGACCCCTT

Downstream 100 bases:

>100_bases
CGGCCCCGTGTCAGGTCACGACGTAAGGCTGTGACATCCATTCCCTGAGCGCCTGCGTCGTTTGCGCGGGATGCTCGAGG
GTAGGCAAATGACCAGCATT

Product: polyhydroxyalkanoate depolymerase, intracellular, putative

Products: NA

Alternate protein names: Intracellular PHB Depolymerase; Polyhydroxyalkanoate Depolymerase; Poly-Beta-Hydroxyalkanoate Depolymerase; PHB Depolymerase; Poly[D(-)-3-Hydroxybutyrate] Depolymerase; Intracellular Poly(3-Hydroxybutyrate) Depolymerase; Intracellular Polyhydroxyalkanoate Depolymerase; Polyhydroxyalkanoate Depolymerase Intracellular Subfamily; Poly(3-Hydroxyalkanoate) Depolymerase; PHB De-Polymerase Domain-Containing Protein; Poly(3-Hydroxybutyrate) Depolymerase; Intracellular PHB Depolymerase Protein; Poly-Beta-Hydroxyalkanoate Depolymerase-Like Protein; Intracellular Poly[D(-)-3-Hydroxybutyrate] Depolymerase; Poly[D(-)-3-Hydroxybutyrate](Phb) Depolymerase; Poly-Beta-Hydroxyalkanoate/Butyrate Depolymerase; Poly-Beta-Hydroxyalkanoate Depolymerase Protein; Poly[D(-)-3-Hydroxyalkanoate] Depolymerase; Polyhydroxybutanoate Depolymerase; Poly-Beta-Hydroxybutyrate Depolymerase

Number of amino acids: Translated: 428; Mature: 428

Protein sequence:

>428_residues
MRYMATYDLMETIRNTNQWLGASALAMGSYPAFALIPNPAFAWMTAWGEVTERTFQRMIVKPDWNIPPVPSLDAQDHLVS
TEVVVEKDFGDLLHFVVADRPTPKRKVLLVAPMSGHYATLLRSTVISLLPDADLYITDWHNARDIPVSAGKFDIEDYTLY
LVDFLRELGPDTHVIAVCQPAPLALAATAYLAEEDPKAQPRSLTLIGGPVDPDATPTDVTDFGRRVTMGQLEEMMIQRVG
FKYPGVGRMVYPGLLQLSSFISMNGETHTKAFVNQITRVAQGDAEEHDKHNRFYDEYLAVMDMTAEFYLSTVERIFKNLE
IAKNEFVVAGKKVDLGKITTVAVKTVEGSKDDISAPGQCVAALDLCTGLPDEKKASHLEEGAGHYGIFAGKSWRRNIRPL
VLDFIDANSGDDQPEPKTKKAANKNAAA

Sequences:

>Translated_428_residues
MRYMATYDLMETIRNTNQWLGASALAMGSYPAFALIPNPAFAWMTAWGEVTERTFQRMIVKPDWNIPPVPSLDAQDHLVS
TEVVVEKDFGDLLHFVVADRPTPKRKVLLVAPMSGHYATLLRSTVISLLPDADLYITDWHNARDIPVSAGKFDIEDYTLY
LVDFLRELGPDTHVIAVCQPAPLALAATAYLAEEDPKAQPRSLTLIGGPVDPDATPTDVTDFGRRVTMGQLEEMMIQRVG
FKYPGVGRMVYPGLLQLSSFISMNGETHTKAFVNQITRVAQGDAEEHDKHNRFYDEYLAVMDMTAEFYLSTVERIFKNLE
IAKNEFVVAGKKVDLGKITTVAVKTVEGSKDDISAPGQCVAALDLCTGLPDEKKASHLEEGAGHYGIFAGKSWRRNIRPL
VLDFIDANSGDDQPEPKTKKAANKNAAA
>Mature_428_residues
MRYMATYDLMETIRNTNQWLGASALAMGSYPAFALIPNPAFAWMTAWGEVTERTFQRMIVKPDWNIPPVPSLDAQDHLVS
TEVVVEKDFGDLLHFVVADRPTPKRKVLLVAPMSGHYATLLRSTVISLLPDADLYITDWHNARDIPVSAGKFDIEDYTLY
LVDFLRELGPDTHVIAVCQPAPLALAATAYLAEEDPKAQPRSLTLIGGPVDPDATPTDVTDFGRRVTMGQLEEMMIQRVG
FKYPGVGRMVYPGLLQLSSFISMNGETHTKAFVNQITRVAQGDAEEHDKHNRFYDEYLAVMDMTAEFYLSTVERIFKNLE
IAKNEFVVAGKKVDLGKITTVAVKTVEGSKDDISAPGQCVAALDLCTGLPDEKKASHLEEGAGHYGIFAGKSWRRNIRPL
VLDFIDANSGDDQPEPKTKKAANKNAAA

Specific function: Unknown

COG id: COG4553

COG function: function code I; Poly-beta-hydroxyalkanoate depolymerase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47337; Mature: 47337

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYMATYDLMETIRNTNQWLGASALAMGSYPAFALIPNPAFAWMTAWGEVTERTFQRMIV
CCEEHHHHHHHHHHHHHHHCCHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHEE
KPDWNIPPVPSLDAQDHLVSTEVVVEKDFGDLLHFVVADRPTPKRKVLLVAPMSGHYATL
CCCCCCCCCCCCCCCHHEEEEEEEEECCHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHH
LRSTVISLLPDADLYITDWHNARDIPVSAGKFDIEDYTLYLVDFLRELGPDTHVIAVCQP
HHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECC
APLALAATAYLAEEDPKAQPRSLTLIGGPVDPDATPTDVTDFGRRVTMGQLEEMMIQRVG
CCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHC
FKYPGVGRMVYPGLLQLSSFISMNGETHTKAFVNQITRVAQGDAEEHDKHNRFYDEYLAV
CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
MDMTAEFYLSTVERIFKNLEIAKNEFVVAGKKVDLGKITTVAVKTVEGSKDDISAPGQCV
HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCEEEEEEEEECCCCCCCCCCHHHH
AALDLCTGLPDEKKASHLEEGAGHYGIFAGKSWRRNIRPLVLDFIDANSGDDQPEPKTKK
HHHHHHCCCCCHHHHHHHHHCCCCEEEECCCHHHCCCCCEEEEEEECCCCCCCCCCHHHH
AANKNAAA
HCCCCCCC
>Mature Secondary Structure
MRYMATYDLMETIRNTNQWLGASALAMGSYPAFALIPNPAFAWMTAWGEVTERTFQRMIV
CCEEHHHHHHHHHHHHHHHCCHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHEE
KPDWNIPPVPSLDAQDHLVSTEVVVEKDFGDLLHFVVADRPTPKRKVLLVAPMSGHYATL
CCCCCCCCCCCCCCCHHEEEEEEEEECCHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHH
LRSTVISLLPDADLYITDWHNARDIPVSAGKFDIEDYTLYLVDFLRELGPDTHVIAVCQP
HHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECC
APLALAATAYLAEEDPKAQPRSLTLIGGPVDPDATPTDVTDFGRRVTMGQLEEMMIQRVG
CCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHC
FKYPGVGRMVYPGLLQLSSFISMNGETHTKAFVNQITRVAQGDAEEHDKHNRFYDEYLAV
CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
MDMTAEFYLSTVERIFKNLEIAKNEFVVAGKKVDLGKITTVAVKTVEGSKDDISAPGQCV
HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEECCCCEEEEEEEEECCCCCCCCCCHHHH
AALDLCTGLPDEKKASHLEEGAGHYGIFAGKSWRRNIRPLVLDFIDANSGDDQPEPKTKK
HHHHHHCCCCCHHHHHHHHHCCCCEEEECCCHHHCCCCCEEEEEEECCCCCCCCCCHHHH
AANKNAAA
HCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA