| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is 110679157
Identifier: 110679157
GI number: 110679157
Start: 1787099
End: 1788088
Strand: Reverse
Name: 110679157
Synonym: RD1_1867
Alternate gene names: NA
Gene position: 1788088-1787099 (Counterclockwise)
Preceding gene: 110679160
Following gene: 110679156
Centisome position: 43.26
GC content: 60.51
Gene sequence:
>990_bases ATGAAGATTTTGAAGGTTGCCGCTGCGGCACTTGCCGTTTTTGCCAGTCCGGCACTCGCCGAATATCCGGAGCGCGAGGT TCTGGGCGTTGTGATGTGGGGTGCGGGAGGTGCCACAGACACTGTTGCGCGCGCCATCAATCCGGCAGCGGAGGAAGCGC TCGGAAAGCCCATTGTGGTATTGAACAAATCAGGCGGTGCAGGCGCAATTTCCACCGCTTTCGTAAACGCCGCACCGGCG GATGGCTACACGTTCCTCTACGGCGCTGAAAACCCGCAGCTTCATGGTGTGATGGGCGTTTCCGACATCGATTATGGTGA CATGTACCCGATCAATATTCTGGGTCGCGGCGTCGCTGTGATCGTGGTTCCCGCCGCATCCAAATATCAAACGCTGGCTG AGCTTCTTGACGACATCGCCGCCAATCCCAATGCCATCAAGATGGGATCGACCGGGCCGGGCGGGTTGCCCTCGACGATT GGTGCGCTGATCTCCAACGCCACAGATTTTGATGTCACGGCAATTCCCTTTGATGGCGAAGGCCCCGGCCTGACCGCGAT GCTCGGGGGTGAGGTTGACTTTATGCCAACGGGTATCTCGGCCGCAGCCGAACAGGTCAAAGCGGGCAACATGCGCGCCT TGGCCGTTGTGAACCCGGAGCCGGTGGATACGCTGCCCGATGTGCCCGCGATCACGGACACCATCCCCGAGATGGCGCGT TTCCTGCCCTGGGGCCCGTTTTATGGCGTGTTCGTGCGCAACGCAGTGCCGGATGACGTAAAAGCCACTTTGACCGAGGC GTTTTCCACTGCGGCCACGGATGCAACCTTCCTCGATCTCATGGCGAACCGCGGTAATGTGGTCATGAACATGAGCGGGC AGGAAGCCGTCGACTTCCTTGCAAAGTGGCAGCAGGTCACCGTCTGGGCGCTACAGGATACCGGGGCCGCCAAGGTCAGC CCGGAAGACCTGGGCATCGCGCGCCCCTGA
Upstream 100 bases:
>100_bases TCTTTTGGCAGAATGACCCGATGCAGTTGACCAGACTTGTGCTTTCCACAAAGGTAGACCTGTACGAAAAGACAAAGGCC ATCAGGTCCAGGGAGAGAAG
Downstream 100 bases:
>100_bases TCCAACCGGTCGACCCGCCTGGGAACGGCGGGTCGACCAGCGGAAAACACATGAAAACACCTGACACCCTCAGACCCGGC GAACGGCTTTTTGCGCTGCT
Product: exported protein, putative
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 329; Mature: 329
Protein sequence:
>329_residues MKILKVAAAALAVFASPALAEYPEREVLGVVMWGAGGATDTVARAINPAAEEALGKPIVVLNKSGGAGAISTAFVNAAPA DGYTFLYGAENPQLHGVMGVSDIDYGDMYPINILGRGVAVIVVPAASKYQTLAELLDDIAANPNAIKMGSTGPGGLPSTI GALISNATDFDVTAIPFDGEGPGLTAMLGGEVDFMPTGISAAAEQVKAGNMRALAVVNPEPVDTLPDVPAITDTIPEMAR FLPWGPFYGVFVRNAVPDDVKATLTEAFSTAATDATFLDLMANRGNVVMNMSGQEAVDFLAKWQQVTVWALQDTGAAKVS PEDLGIARP
Sequences:
>Translated_329_residues MKILKVAAAALAVFASPALAEYPEREVLGVVMWGAGGATDTVARAINPAAEEALGKPIVVLNKSGGAGAISTAFVNAAPA DGYTFLYGAENPQLHGVMGVSDIDYGDMYPINILGRGVAVIVVPAASKYQTLAELLDDIAANPNAIKMGSTGPGGLPSTI GALISNATDFDVTAIPFDGEGPGLTAMLGGEVDFMPTGISAAAEQVKAGNMRALAVVNPEPVDTLPDVPAITDTIPEMAR FLPWGPFYGVFVRNAVPDDVKATLTEAFSTAATDATFLDLMANRGNVVMNMSGQEAVDFLAKWQQVTVWALQDTGAAKVS PEDLGIARP >Mature_329_residues MKILKVAAAALAVFASPALAEYPEREVLGVVMWGAGGATDTVARAINPAAEEALGKPIVVLNKSGGAGAISTAFVNAAPA DGYTFLYGAENPQLHGVMGVSDIDYGDMYPINILGRGVAVIVVPAASKYQTLAELLDDIAANPNAIKMGSTGPGGLPSTI GALISNATDFDVTAIPFDGEGPGLTAMLGGEVDFMPTGISAAAEQVKAGNMRALAVVNPEPVDTLPDVPAITDTIPEMAR FLPWGPFYGVFVRNAVPDDVKATLTEAFSTAATDATFLDLMANRGNVVMNMSGQEAVDFLAKWQQVTVWALQDTGAAKVS PEDLGIARP
Specific function: Unknown
COG id: COG3181
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0065 (bug) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005064 [H]
Pfam domain/function: PF03401 Bug [H]
EC number: NA
Molecular weight: Translated: 33907; Mature: 33907
Theoretical pI: Translated: 4.04; Mature: 4.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKILKVAAAALAVFASPALAEYPEREVLGVVMWGAGGATDTVARAINPAAEEALGKPIVV CHHHHHHHHHHHHHCCCHHHHCCCCCEEEEEEECCCCCHHHHHHHCCHHHHHHCCCCEEE LNKSGGAGAISTAFVNAAPADGYTFLYGAENPQLHGVMGVSDIDYGDMYPINILGRGVAV EECCCCCCCHHHHEEECCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCEEECCCEEE IVVPAASKYQTLAELLDDIAANPNAIKMGSTGPGGLPSTIGALISNATDFDVTAIPFDGE EEEECCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCEEEEECCCC GPGLTAMLGGEVDFMPTGISAAAEQVKAGNMRALAVVNPEPVDTLPDVPAITDTIPEMAR CCCEEEEECCCEEEECCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHH FLPWGPFYGVFVRNAVPDDVKATLTEAFSTAATDATFLDLMANRGNVVMNMSGQEAVDFL HCCCCCHHHHHEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEECCCHHHHHHH AKWQQVTVWALQDTGAAKVSPEDLGIARP HHHCEEEEEEEECCCCCCCCHHHCCCCCC >Mature Secondary Structure MKILKVAAAALAVFASPALAEYPEREVLGVVMWGAGGATDTVARAINPAAEEALGKPIVV CHHHHHHHHHHHHHCCCHHHHCCCCCEEEEEEECCCCCHHHHHHHCCHHHHHHCCCCEEE LNKSGGAGAISTAFVNAAPADGYTFLYGAENPQLHGVMGVSDIDYGDMYPINILGRGVAV EECCCCCCCHHHHEEECCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCEEECCCEEE IVVPAASKYQTLAELLDDIAANPNAIKMGSTGPGGLPSTIGALISNATDFDVTAIPFDGE EEEECCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCEEEEECCCC GPGLTAMLGGEVDFMPTGISAAAEQVKAGNMRALAVVNPEPVDTLPDVPAITDTIPEMAR CCCEEEEECCCEEEECCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHH FLPWGPFYGVFVRNAVPDDVKATLTEAFSTAATDATFLDLMANRGNVVMNMSGQEAVDFL HCCCCCHHHHHEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEECCCHHHHHHH AKWQQVTVWALQDTGAAKVSPEDLGIARP HHHCEEEEEEEECCCCCCCCHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3299368 [H]