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The map label for this gene is rpoH [H]

Identifier: 110679109

GI number: 110679109

Start: 1737568

End: 1738464

Strand: Direct

Name: rpoH [H]

Synonym: RD1_1814

Alternate gene names: 110679109

Gene position: 1737568-1738464 (Clockwise)

Preceding gene: 110679108

Following gene: 110679111

Centisome position: 42.04

GC content: 56.52

Gene sequence:

>897_bases
ATGGCCAATTACGCAAATCTGCCGGCCCCGACGCCGGAGGGCGGTTTGAACCGCTACATGCAGGAAATTCGCAAGTTCCC
GCTGCTTGAACCGCAAGAAGAATACATGCTGGCAAAGCGCTGGGTCGAAGAACAGGATACGGAGGCGGCCCATAAGATGG
TCACTTCGCATCTGCGTCTGGCGGCAAAAATCGCCATGGGCTATCGTGGCTACGGATTGCCGCAGGCCGAAGTCATATCA
GAGGCGAATGTCGGCTTGATGCAGGCGGTGAAACGGTTCGATCCGGAAAAAGGGTTCCGGCTGGCCACATATGCGATGTG
GTGGATCCGCGCGTCGATTCAGGAATATATCCTGCGGTCCTGGTCGCTGGTAAAGCTGGGCACGACATCGGGTCAAAAGA
AGTTGTTTTTCAATCTTCGCAAAGCCAAAAACAAGATTGGCGCGCTCGAAGAAGGCGATCTGCATCCCGACAACGTGGCA
CGTATTGCAAAGGACCTTGGTGTAACCGAGACCGAAGTCATTTCGATGAACCGGCGCATGTCAGGCGGTGATGCTTCTCT
CAATGCGACCGTCGGGTCCGAAGGCGAGGGGACGATGCAATGGCAGGACTGGCTCGAGGACGAGGATGCCGATCAGGCCG
GTGATTACGAGGCGCGCGACGAGTTGGAAGCGCGGCGCGAACTGTTGGCAGACGCGATGAGTGTCCTGAATGACCGGGAA
AGAGATATCCTTCAACAGCGCAGGCTGTCCGAGCAGACGGTGACGCTCGAAGACCTCAGCGCCGAGTATAACGTCAGTCG
TGAACGTATCCGTCAGATCGAAGTGCGCGCCTTTGAAAAGCTGCAAAAGAAGATGCGCGATCTGGCCAAGGAAAAAGGCA
TGCCCGTTTCGGCCTGA

Upstream 100 bases:

>100_bases
TCTGTGCGTCTTGCGTTAACAATTTCTGTGGATCGAGACTTGAACCGATCAGTTTAGATCCCATATCTATGTTAACACCT
TAAACATCGGGAGGCTTCAA

Downstream 100 bases:

>100_bases
CCCTTGGGAACCTGCGTTTTTCGCATTGGTTCAACGGCGTACCTACCATCCCGCGTCTGACTCCCCCCTCACGGGTCAGA
CGCCGCAAACAAAACCGCCC

Product: RNA polymerase factor sigma-32

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MANYANLPAPTPEGGLNRYMQEIRKFPLLEPQEEYMLAKRWVEEQDTEAAHKMVTSHLRLAAKIAMGYRGYGLPQAEVIS
EANVGLMQAVKRFDPEKGFRLATYAMWWIRASIQEYILRSWSLVKLGTTSGQKKLFFNLRKAKNKIGALEEGDLHPDNVA
RIAKDLGVTETEVISMNRRMSGGDASLNATVGSEGEGTMQWQDWLEDEDADQAGDYEARDELEARRELLADAMSVLNDRE
RDILQQRRLSEQTVTLEDLSAEYNVSRERIRQIEVRAFEKLQKKMRDLAKEKGMPVSA

Sequences:

>Translated_298_residues
MANYANLPAPTPEGGLNRYMQEIRKFPLLEPQEEYMLAKRWVEEQDTEAAHKMVTSHLRLAAKIAMGYRGYGLPQAEVIS
EANVGLMQAVKRFDPEKGFRLATYAMWWIRASIQEYILRSWSLVKLGTTSGQKKLFFNLRKAKNKIGALEEGDLHPDNVA
RIAKDLGVTETEVISMNRRMSGGDASLNATVGSEGEGTMQWQDWLEDEDADQAGDYEARDELEARRELLADAMSVLNDRE
RDILQQRRLSEQTVTLEDLSAEYNVSRERIRQIEVRAFEKLQKKMRDLAKEKGMPVSA
>Mature_297_residues
ANYANLPAPTPEGGLNRYMQEIRKFPLLEPQEEYMLAKRWVEEQDTEAAHKMVTSHLRLAAKIAMGYRGYGLPQAEVISE
ANVGLMQAVKRFDPEKGFRLATYAMWWIRASIQEYILRSWSLVKLGTTSGQKKLFFNLRKAKNKIGALEEGDLHPDNVAR
IAKDLGVTETEVISMNRRMSGGDASLNATVGSEGEGTMQWQDWLEDEDADQAGDYEARDELEARRELLADAMSVLNDRER
DILQQRRLSEQTVTLEDLSAEYNVSRERIRQIEVRAFEKLQKKMRDLAKEKGMPVSA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is responsible for the expression of heat shock promoters [H]

COG id: COG0568

COG function: function code K; DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. Sigma-32 subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789871, Length=276, Percent_Identity=40.5797101449275, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI1789098, Length=285, Percent_Identity=31.2280701754386, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1789448, Length=248, Percent_Identity=28.6290322580645, Blast_Score=85, Evalue=6e-18,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000943
- InterPro:   IPR009042
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR012759
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00140 Sigma70_r1_2; PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 34002; Mature: 33871

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: PS00716 SIGMA70_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANYANLPAPTPEGGLNRYMQEIRKFPLLEPQEEYMLAKRWVEEQDTEAAHKMVTSHLRL
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAKIAMGYRGYGLPQAEVISEANVGLMQAVKRFDPEKGFRLATYAMWWIRASIQEYILRS
HHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHC
WSLVKLGTTSGQKKLFFNLRKAKNKIGALEEGDLHPDNVARIAKDLGVTETEVISMNRRM
CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCC
SGGDASLNATVGSEGEGTMQWQDWLEDEDADQAGDYEARDELEARRELLADAMSVLNDRE
CCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHH
RDILQQRRLSEQTVTLEDLSAEYNVSRERIRQIEVRAFEKLQKKMRDLAKEKGMPVSA
HHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
ANYANLPAPTPEGGLNRYMQEIRKFPLLEPQEEYMLAKRWVEEQDTEAAHKMVTSHLRL
CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAKIAMGYRGYGLPQAEVISEANVGLMQAVKRFDPEKGFRLATYAMWWIRASIQEYILRS
HHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHC
WSLVKLGTTSGQKKLFFNLRKAKNKIGALEEGDLHPDNVARIAKDLGVTETEVISMNRRM
CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCC
SGGDASLNATVGSEGEGTMQWQDWLEDEDADQAGDYEARDELEARRELLADAMSVLNDRE
CCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHH
RDILQQRRLSEQTVTLEDLSAEYNVSRERIRQIEVRAFEKLQKKMRDLAKEKGMPVSA
HHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8606166 [H]