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The map label for this gene is adiY [C]

Identifier: 110679106

GI number: 110679106

Start: 1735025

End: 1736038

Strand: Direct

Name: adiY [C]

Synonym: RD1_1811

Alternate gene names: 110679106

Gene position: 1735025-1736038 (Clockwise)

Preceding gene: 110679105

Following gene: 110679108

Centisome position: 41.98

GC content: 59.76

Gene sequence:

>1014_bases
ATGACGTTCATCGGACCAAACCTCGCGCTGGCCAGCCACGCCGCATTGCGGTTACGCCATCAGGCTTCCGCAGAGGTCGT
GAAGCAAATCGCGGATAATCTGGATATGCCGGACCCTCTGACGGCCAAACGCACGGAAAAGATCACGACGCATCAGGAAG
CGGCCTTTGTTGAGCAGGCAAGCCGGGCTTTGCGCGACATTGATTTCGGGTTTTCATGCGGTCTGACCTATGCCACCGCC
GGAACCTTGCCCGCCTATCTTGCCGAGCACGCCAGTACCTTGCGCGAAGGGTTGAACCTCGCAATAGATCATTTGCACAC
CGTCAGACCGGGGATGGATTTCGTGCTGGATGAAAGCGGAAACGCGGCAAATCTGAGGCTGGTGCTGTCTGATACCAAGC
TGCTGGAGTTTCCCCGGCACACGGAGATGATCTATGCCGGTGTCACGGCGCAGGTCCGTGCCTTCACCAAGCGCGCCTTT
TATCCGGATGCAATCAGCTTTTCCTATCACAGGCCGCCCATCGGGGCCGAAGTGCGCGCGCGGATGGGGTGCGCGGTCGC
GTTTGGCGCAGAGCAGATCGAGATGTCGATGAGCCCTGCGATCCTTGATGCCTGCATGGTTTCCAGCGACGAAGTGCTGC
TTGGCCTGCTGCTTGACCAAGCGAAGGCCATCGAGGCGAAAGTGTCTCACGCGCAGGCGAGCACGGCAGAGAAGGTCGAA
GTCTTGATCGAGGCGGGGCTGGCACATGAAGTGCCCAAAATCAGCGATATCGCGCATGCGCTTGGCCTGTCCCAACGCAC
TCTGGCGCGTCGGCTCAACGAAGCGGAAACGAGCTATTCCGGCATCTTGAACCATGTTCGCCTGCGGGTGGCCGCGCGTG
AGTTGCGCGAAAGCAAAAACCAGATCGGCGAGATCAGCTGGCGGCTCGGCTATGGCTCGACGGCGTCCTTCTCCACGGCA
TTCAAGCGCGAAACCGGCCTGTCCCCCAGAGAATACCGCCAAATGAACACCTGA

Upstream 100 bases:

>100_bases
ACCACCCCCCCTACAACGTCGTCGCTGCAGCCGGGTTCGGATAGGGCAAGCGCACCGCGTGATCTTGCGTAAAGCCGGGT
GAAGTGTATTCCTTCGGGAT

Downstream 100 bases:

>100_bases
GCGGCGGGCATCAGTCGATGGTCACTGTCTGCTTGAGCGTGCCCGTGATCCGGTCATAAATCAGGATGCGGTTGTCGTCC
GTGACAACGGCGTACCAGTC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 336

Protein sequence:

>337_residues
MTFIGPNLALASHAALRLRHQASAEVVKQIADNLDMPDPLTAKRTEKITTHQEAAFVEQASRALRDIDFGFSCGLTYATA
GTLPAYLAEHASTLREGLNLAIDHLHTVRPGMDFVLDESGNAANLRLVLSDTKLLEFPRHTEMIYAGVTAQVRAFTKRAF
YPDAISFSYHRPPIGAEVRARMGCAVAFGAEQIEMSMSPAILDACMVSSDEVLLGLLLDQAKAIEAKVSHAQASTAEKVE
VLIEAGLAHEVPKISDIAHALGLSQRTLARRLNEAETSYSGILNHVRLRVAARELRESKNQIGEISWRLGYGSTASFSTA
FKRETGLSPREYRQMNT

Sequences:

>Translated_337_residues
MTFIGPNLALASHAALRLRHQASAEVVKQIADNLDMPDPLTAKRTEKITTHQEAAFVEQASRALRDIDFGFSCGLTYATA
GTLPAYLAEHASTLREGLNLAIDHLHTVRPGMDFVLDESGNAANLRLVLSDTKLLEFPRHTEMIYAGVTAQVRAFTKRAF
YPDAISFSYHRPPIGAEVRARMGCAVAFGAEQIEMSMSPAILDACMVSSDEVLLGLLLDQAKAIEAKVSHAQASTAEKVE
VLIEAGLAHEVPKISDIAHALGLSQRTLARRLNEAETSYSGILNHVRLRVAARELRESKNQIGEISWRLGYGSTASFSTA
FKRETGLSPREYRQMNT
>Mature_336_residues
TFIGPNLALASHAALRLRHQASAEVVKQIADNLDMPDPLTAKRTEKITTHQEAAFVEQASRALRDIDFGFSCGLTYATAG
TLPAYLAEHASTLREGLNLAIDHLHTVRPGMDFVLDESGNAANLRLVLSDTKLLEFPRHTEMIYAGVTAQVRAFTKRAFY
PDAISFSYHRPPIGAEVRARMGCAVAFGAEQIEMSMSPAILDACMVSSDEVLLGLLLDQAKAIEAKVSHAQASTAEKVEV
LIEAGLAHEVPKISDIAHALGLSQRTLARRLNEAETSYSGILNHVRLRVAARELRESKNQIGEISWRLGYGSTASFSTAF
KRETGLSPREYRQMNT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 36858; Mature: 36727

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFIGPNLALASHAALRLRHQASAEVVKQIADNLDMPDPLTAKRTEKITTHQEAAFVEQA
CCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
SRALRDIDFGFSCGLTYATAGTLPAYLAEHASTLREGLNLAIDHLHTVRPGMDFVLDESG
HHHHHHCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCC
NAANLRLVLSDTKLLEFPRHTEMIYAGVTAQVRAFTKRAFYPDAISFSYHRPPIGAEVRA
CCEEEEEEEECCHHHHCCCCHHEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
RMGCAVAFGAEQIEMSMSPAILDACMVSSDEVLLGLLLDQAKAIEAKVSHAQASTAEKVE
HHCCCEEECHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLIEAGLAHEVPKISDIAHALGLSQRTLARRLNEAETSYSGILNHVRLRVAARELRESKN
HHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QIGEISWRLGYGSTASFSTAFKRETGLSPREYRQMNT
HHHCEEEEECCCCCCCHHHHHHHHCCCCHHHHHCCCC
>Mature Secondary Structure 
TFIGPNLALASHAALRLRHQASAEVVKQIADNLDMPDPLTAKRTEKITTHQEAAFVEQA
CEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
SRALRDIDFGFSCGLTYATAGTLPAYLAEHASTLREGLNLAIDHLHTVRPGMDFVLDESG
HHHHHHCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCC
NAANLRLVLSDTKLLEFPRHTEMIYAGVTAQVRAFTKRAFYPDAISFSYHRPPIGAEVRA
CCEEEEEEEECCHHHHCCCCHHEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
RMGCAVAFGAEQIEMSMSPAILDACMVSSDEVLLGLLLDQAKAIEAKVSHAQASTAEKVE
HHCCCEEECHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLIEAGLAHEVPKISDIAHALGLSQRTLARRLNEAETSYSGILNHVRLRVAARELRESKN
HHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QIGEISWRLGYGSTASFSTAFKRETGLSPREYRQMNT
HHHCEEEEECCCCCCCHHHHHHHHCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036; 12368430 [H]