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The map label for this gene is yciR [C]

Identifier: 110679010

GI number: 110679010

Start: 1642702

End: 1644561

Strand: Direct

Name: yciR [C]

Synonym: RD1_1709

Alternate gene names: 110679010

Gene position: 1642702-1644561 (Clockwise)

Preceding gene: 110679007

Following gene: 110679011

Centisome position: 39.75

GC content: 54.14

Gene sequence:

>1860_bases
ATGATACCTGCTCAGATATTCAATCAAATCAATGACAAGTGCACCGAAGGGCTCGCACTTGCTTTGGCGTCGAGCGAGGA
CGGCGCCGTGATGGAAATCCAGTGGAGTAATAAAGCCTTTACAAGGATTACCGGATACACCGCCGCCGAGGCTTTGGGTG
AACGCGGCACCATATTGATCGGTCCGGATATGGGGCAGGGCGTTCACCTCTATATCATCGAAAAGCTGATGAAGTGGGAG
AACTTTTCAACCAAATCGCGCAACAACCGAAAGAATGGCGAGGTTTACTGGCAGCGCATGAGTTGGGTACACCTCTCCGA
GGCCGAGACGGGCAATCACTGGTGGCTATGCTCGATCATAGAACTTGAGGAAGAGCACGCGGCACCCGCCTCGCAGGTGT
TGCAAGACCCGGCGGTGGCAGATCAGGCAGCCTTTGCAAAGGCGCTTGAACAGGTTGAACGTCTGGAAAAGGAAAACACA
CGTTTGCACCAACTTGCAAAATCGGTTGCCAAAGATGCGAATGAGGATGCGTTGACCGGCCTGTCAAACCGCCGCCATTT
CGAGGTTGAGCTCAAGACATGGATTGAGAACCTGAAAAAGCACGGCACGGAATTCGCTGTCATCTACATCGACCTTGACC
GTTTCAAGTTCGTGAATGACACGCTGGGTCATGATGCCGGTGACCGGCTGCTGGTTTCCGTGGCCGATATGCTGCGCGAT
CTGACTGGTGACTGTGACCTCGTTGCGCGTCTTGGCGGGGACGAGTTTGTGATACTGAGGCCACTCGCGCAGAGCGCTCT
GAATATCAGCAGTCTGGCCGATGACATCGTCGGGACGATGCAGGCGCCTTTTGCATGCGACGGTAAGTCGACGGCCTGCA
GCGCGAGTGTTGGTGTGGCGATTGCGAATAAACACATGGAACACCCCGAACAGGTGGTCGCGGATGCTGATGAAGCGCTT
TATCATGCGAAATCGCAGGGCAAGGGCCGTTGGTCATTTTTCACCGAGGAAATGCACGCCAAATCCATCGCCACCAAAAA
GCTCGCATCAGACTTGTTGCTCGCCTGCGAAAGAAGTGAGTTCATCCCATATTTCCAGCCATTGATTGATGCGCAGAGCG
GTAAAATTGTCTCCGCTGAAATGCTGGTGCGATGGGCACATCCAACGCAGGGCATTCTTGCACCCGCCGCCTTTCTTGAT
ACCGCCGCAAATATGGGAATCCTCAAGCGGATTGATGAAATTGTCTTTGCCAGCGTGCATGGTGCATTGTCCCGCTTTGA
CGATGCAGGTGTGGATCTGCCGCGCGTTGCTGTGAATGTCTCTGCCGCGCGCTTGGCGGATCCCACATTCATCCATGACA
TCAAAAGCTCTGGTATCAACCCTCAGAGACTGACGATTGAAATCCTTGAGTCGGTTTATCTGGACCGGATGGGGGATGTG
GTGCGGTGGACCATTGATGAGTTGGACGAGTTGGGCGTGACGATTGCCCTTGACGATTTTGGCACCGGACATGCCTCTGT
GTCTGGCCTGTTGAAAATCCGACCGGCGATTTTGAAGGTTGACCGTCATTTTATTCAGCCGATTGTCGAGCAGGCAAACA
CAAGGCCGCTGGTCGCATCAATTGTGGGCATTGGAAAAAGCCTTGGAATGCGGGTGGTGGCTGAAGGCGTCGAAACCGAA
GAACATGCGCGCCTCGTCACGGAGATGGGCTGCGATTATCTGCAGGGTTTCTATTTTGGCAAACCGATGAGCGAGAGCGA
TCTGCGCAACAGGCTCATTGAATCGGGCGGGCAATTCTGGTCCCCGCAACCGGTTGACGAAAACCGCAAGGTGCTGCGTA
ATATCGCCAGCGCAGGTTAA

Upstream 100 bases:

>100_bases
CATTATAACTTTCCCTAAAAAAGGCTTGGCGCATTCTTTGGGCTTAACAATTCCTAATCGTCTGGATGCCACAAGGAGGA
CAGCGTTTAGGGCTCTACAC

Downstream 100 bases:

>100_bases
CCGTTGTTCGTTGCACACCAGTGTTGGCTTTGAAACCATGACGCCCAAGCGGGATGATCTCGGGCTCCGTCGGCGGGGAA
TCTTGGACAAAAGTGGCAAG

Product: GGDEF/EAL domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 619; Mature: 619

Protein sequence:

>619_residues
MIPAQIFNQINDKCTEGLALALASSEDGAVMEIQWSNKAFTRITGYTAAEALGERGTILIGPDMGQGVHLYIIEKLMKWE
NFSTKSRNNRKNGEVYWQRMSWVHLSEAETGNHWWLCSIIELEEEHAAPASQVLQDPAVADQAAFAKALEQVERLEKENT
RLHQLAKSVAKDANEDALTGLSNRRHFEVELKTWIENLKKHGTEFAVIYIDLDRFKFVNDTLGHDAGDRLLVSVADMLRD
LTGDCDLVARLGGDEFVILRPLAQSALNISSLADDIVGTMQAPFACDGKSTACSASVGVAIANKHMEHPEQVVADADEAL
YHAKSQGKGRWSFFTEEMHAKSIATKKLASDLLLACERSEFIPYFQPLIDAQSGKIVSAEMLVRWAHPTQGILAPAAFLD
TAANMGILKRIDEIVFASVHGALSRFDDAGVDLPRVAVNVSAARLADPTFIHDIKSSGINPQRLTIEILESVYLDRMGDV
VRWTIDELDELGVTIALDDFGTGHASVSGLLKIRPAILKVDRHFIQPIVEQANTRPLVASIVGIGKSLGMRVVAEGVETE
EHARLVTEMGCDYLQGFYFGKPMSESDLRNRLIESGGQFWSPQPVDENRKVLRNIASAG

Sequences:

>Translated_619_residues
MIPAQIFNQINDKCTEGLALALASSEDGAVMEIQWSNKAFTRITGYTAAEALGERGTILIGPDMGQGVHLYIIEKLMKWE
NFSTKSRNNRKNGEVYWQRMSWVHLSEAETGNHWWLCSIIELEEEHAAPASQVLQDPAVADQAAFAKALEQVERLEKENT
RLHQLAKSVAKDANEDALTGLSNRRHFEVELKTWIENLKKHGTEFAVIYIDLDRFKFVNDTLGHDAGDRLLVSVADMLRD
LTGDCDLVARLGGDEFVILRPLAQSALNISSLADDIVGTMQAPFACDGKSTACSASVGVAIANKHMEHPEQVVADADEAL
YHAKSQGKGRWSFFTEEMHAKSIATKKLASDLLLACERSEFIPYFQPLIDAQSGKIVSAEMLVRWAHPTQGILAPAAFLD
TAANMGILKRIDEIVFASVHGALSRFDDAGVDLPRVAVNVSAARLADPTFIHDIKSSGINPQRLTIEILESVYLDRMGDV
VRWTIDELDELGVTIALDDFGTGHASVSGLLKIRPAILKVDRHFIQPIVEQANTRPLVASIVGIGKSLGMRVVAEGVETE
EHARLVTEMGCDYLQGFYFGKPMSESDLRNRLIESGGQFWSPQPVDENRKVLRNIASAG
>Mature_619_residues
MIPAQIFNQINDKCTEGLALALASSEDGAVMEIQWSNKAFTRITGYTAAEALGERGTILIGPDMGQGVHLYIIEKLMKWE
NFSTKSRNNRKNGEVYWQRMSWVHLSEAETGNHWWLCSIIELEEEHAAPASQVLQDPAVADQAAFAKALEQVERLEKENT
RLHQLAKSVAKDANEDALTGLSNRRHFEVELKTWIENLKKHGTEFAVIYIDLDRFKFVNDTLGHDAGDRLLVSVADMLRD
LTGDCDLVARLGGDEFVILRPLAQSALNISSLADDIVGTMQAPFACDGKSTACSASVGVAIANKHMEHPEQVVADADEAL
YHAKSQGKGRWSFFTEEMHAKSIATKKLASDLLLACERSEFIPYFQPLIDAQSGKIVSAEMLVRWAHPTQGILAPAAFLD
TAANMGILKRIDEIVFASVHGALSRFDDAGVDLPRVAVNVSAARLADPTFIHDIKSSGINPQRLTIEILESVYLDRMGDV
VRWTIDELDELGVTIALDDFGTGHASVSGLLKIRPAILKVDRHFIQPIVEQANTRPLVASIVGIGKSLGMRVVAEGVETE
EHARLVTEMGCDYLQGFYFGKPMSESDLRNRLIESGGQFWSPQPVDENRKVLRNIASAG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=418, Percent_Identity=33.4928229665072, Blast_Score=219, Evalue=4e-58,
Organism=Escherichia coli, GI87081921, Length=475, Percent_Identity=26.7368421052632, Blast_Score=186, Evalue=4e-48,
Organism=Escherichia coli, GI226510982, Length=431, Percent_Identity=26.2180974477958, Blast_Score=135, Evalue=9e-33,
Organism=Escherichia coli, GI1790496, Length=233, Percent_Identity=30.0429184549356, Blast_Score=123, Evalue=4e-29,
Organism=Escherichia coli, GI1788502, Length=247, Percent_Identity=29.9595141700405, Blast_Score=122, Evalue=5e-29,
Organism=Escherichia coli, GI1787055, Length=246, Percent_Identity=30.4878048780488, Blast_Score=119, Evalue=5e-28,
Organism=Escherichia coli, GI87081980, Length=255, Percent_Identity=30.5882352941176, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI1786507, Length=268, Percent_Identity=28.7313432835821, Blast_Score=116, Evalue=4e-27,
Organism=Escherichia coli, GI87081845, Length=238, Percent_Identity=27.3109243697479, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1786584, Length=173, Percent_Identity=32.9479768786127, Blast_Score=105, Evalue=1e-23,
Organism=Escherichia coli, GI87081743, Length=243, Percent_Identity=29.2181069958848, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI1788381, Length=435, Percent_Identity=25.0574712643678, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI1788849, Length=244, Percent_Identity=31.5573770491803, Blast_Score=100, Evalue=5e-22,
Organism=Escherichia coli, GI145693134, Length=174, Percent_Identity=36.2068965517241, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI87082096, Length=203, Percent_Identity=32.0197044334975, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1788956, Length=176, Percent_Identity=31.8181818181818, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI87081977, Length=214, Percent_Identity=28.0373831775701, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1789650, Length=479, Percent_Identity=20.8768267223382, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI87081881, Length=173, Percent_Identity=34.1040462427746, Blast_Score=80, Evalue=5e-16,
Organism=Escherichia coli, GI87082007, Length=174, Percent_Identity=32.7586206896552, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1787262, Length=176, Percent_Identity=31.25, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI1787802, Length=176, Percent_Identity=30.6818181818182, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI87081974, Length=100, Percent_Identity=38, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1787816, Length=172, Percent_Identity=30.2325581395349, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1787410, Length=217, Percent_Identity=22.5806451612903, Blast_Score=63, Evalue=5e-11,
Organism=Escherichia coli, GI1788085, Length=164, Percent_Identity=26.8292682926829, Blast_Score=63, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 68199; Mature: 68199

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPAQIFNQINDKCTEGLALALASSEDGAVMEIQWSNKAFTRITGYTAAEALGERGTILI
CCCHHHHHHHHHHHHCCEEEEEECCCCCCEEEEEECCCCEEEECCHHHHHHHCCCCCEEE
GPDMGQGVHLYIIEKLMKWENFSTKSRNNRKNGEVYWQRMSWVHLSEAETGNHWWLCSII
CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCEEEEEEEE
ELEEEHAAPASQVLQDPAVADQAAFAKALEQVERLEKENTRLHQLAKSVAKDANEDALTG
EECHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHC
LSNRRHFEVELKTWIENLKKHGTEFAVIYIDLDRFKFVNDTLGHDAGDRLLVSVADMLRD
CCCCCEEEEEHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHCCCCCCHHHHHHHHHHHHH
LTGDCDLVARLGGDEFVILRPLAQSALNISSLADDIVGTMQAPFACDGKSTACSASVGVA
HCCCCHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
IANKHMEHPEQVVADADEALYHAKSQGKGRWSFFTEEMHAKSIATKKLASDLLLACERSE
HHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
FIPYFQPLIDAQSGKIVSAEMLVRWAHPTQGILAPAAFLDTAANMGILKRIDEIVFASVH
CCHHHHHHHCCCCCCEEEHHHHHEECCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
GALSRFDDAGVDLPRVAVNVSAARLADPTFIHDIKSSGINPQRLTIEILESVYLDRMGDV
HHHHHHCCCCCCCCHHEEECHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHH
VRWTIDELDELGVTIALDDFGTGHASVSGLLKIRPAILKVDRHFIQPIVEQANTRPLVAS
HHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
IVGIGKSLGMRVVAEGVETEEHARLVTEMGCDYLQGFYFGKPMSESDLRNRLIESGGQFW
HHHHHHHHCHHHHHCCCCHHHHHHHHHHHCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCC
SPQPVDENRKVLRNIASAG
CCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MIPAQIFNQINDKCTEGLALALASSEDGAVMEIQWSNKAFTRITGYTAAEALGERGTILI
CCCHHHHHHHHHHHHCCEEEEEECCCCCCEEEEEECCCCEEEECCHHHHHHHCCCCCEEE
GPDMGQGVHLYIIEKLMKWENFSTKSRNNRKNGEVYWQRMSWVHLSEAETGNHWWLCSII
CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCEEEEEEEE
ELEEEHAAPASQVLQDPAVADQAAFAKALEQVERLEKENTRLHQLAKSVAKDANEDALTG
EECHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHC
LSNRRHFEVELKTWIENLKKHGTEFAVIYIDLDRFKFVNDTLGHDAGDRLLVSVADMLRD
CCCCCEEEEEHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHCCCCCCHHHHHHHHHHHHH
LTGDCDLVARLGGDEFVILRPLAQSALNISSLADDIVGTMQAPFACDGKSTACSASVGVA
HCCCCHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
IANKHMEHPEQVVADADEALYHAKSQGKGRWSFFTEEMHAKSIATKKLASDLLLACERSE
HHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
FIPYFQPLIDAQSGKIVSAEMLVRWAHPTQGILAPAAFLDTAANMGILKRIDEIVFASVH
CCHHHHHHHCCCCCCEEEHHHHHEECCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
GALSRFDDAGVDLPRVAVNVSAARLADPTFIHDIKSSGINPQRLTIEILESVYLDRMGDV
HHHHHHCCCCCCCCHHEEECHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHH
VRWTIDELDELGVTIALDDFGTGHASVSGLLKIRPAILKVDRHFIQPIVEQANTRPLVAS
HHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
IVGIGKSLGMRVVAEGVETEEHARLVTEMGCDYLQGFYFGKPMSESDLRNRLIESGGQFW
HHHHHHHHCHHHHHCCCCHHHHHHHHHHHCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCC
SPQPVDENRKVLRNIASAG
CCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]