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The map label for this gene is cafA [C]

Identifier: 110678990

GI number: 110678990

Start: 1621366

End: 1622388

Strand: Direct

Name: cafA [C]

Synonym: RD1_1687

Alternate gene names: 110678990

Gene position: 1621366-1622388 (Clockwise)

Preceding gene: 110678989

Following gene: 110678991

Centisome position: 39.23

GC content: 62.66

Gene sequence:

>1023_bases
ATGAAGGGCCAGACGATCATTCTCGATCACATCGAAAACCGGGAAGCGGCTGCCCTGATGGTGGATGGCACCTTGCAGGA
TATGCTCGTAGCGTCGGATCAACCGCGCCCCGGTACGATTTACCGCGCGATTGCCGACCGGCCTGTCAAAGGGCAGGGGG
GCATGTTCCTCAAGACGCCTGATGGGTCTGCGTTTCTGCGGCAGGTCAAGGGGATGGCCCCGGGGCAGGCGGTGCTGGTG
CAGGTCAGTGGCTACGCCGAAGCGGGCAAGGCCATCCCCGTTGCGCAAAAACTGCTGTTCAAGAGCCGCTATGTGATCGT
GACGCCGGATGCGCCCGGTCTCAACATCAGCCGCTCAATCAGGGATGAGGCGGAACGCGACCGCCTGCTGGAAATCGCCC
ACGAGGGCGCAGGCGGGTCCGGATACGGTTTGATCCTGCGGTCTTCCTGTGAGAACGCGGATGAAGAGGATATTGCGCAG
GACATCGACACGATGATGGCGCTGGCATCCGACGTGCTGAATGATGCGGGCGGTGACATGGCCGTGCTGGCCACGGGGGA
CGGCCCGCATCTGCTTGCATGGCGCGACTGGGTCAATCCCGGTGAGGTGGTGACGCAGGCGGGTTCCTTTGAGACACATG
GCGTGCTGGACGCATTGGACCGCGACCTTGGTGTCCTGCAACCGCTTGATGGGGGGGCAAGTTTCTACATTGAACCAACC
CGGGCCCTGATCGCGGTGGACGTCAACACAGGGCGCGATACCTCGCTTGCGGCGGGGCTGAATGCAAATCTCGCCTGTGC
GCGCATGTTGCCGCGTGCGTTGCGCGTCAAGGGGCTGGGGGGGCAGATTGTCCTTGATCTGGCCCCGATGCCGAAAAAGG
ATCGGCGTCGGTTTGAAACGGCGCTTCGGCAGGCGTTCAAAAGCTGTAGTGTGGAAACTGCGCTGGTGGGGTGGACGCCG
CTGGGCCACTATGAGTTGCAGCGCAAACGGGCGCGTGTGCCCTTGCATGAGGTCTTGCCGTGA

Upstream 100 bases:

>100_bases
CATTGATTCCGTGGATCAGTGGGTCCTACACGGGCATCGTCGGGTTGCCTCTGGCCGAAACGGCCGGTCTGTTGCAGGCG
GCGGGATACAGGGGGGCCTC

Downstream 100 bases:

>100_bases
GTTGCCCGATCTGTGGAAAGCCGACTGTTCAGGCGGTGAGCCCGTTCTGTTCAAAACGATGCGCCGACCTTGATCTGGCG
CGGTGGTTCAATGGCAGCTA

Product: ribonuclease G, putative

Products: NA

Alternate protein names: Ribonuclease; Ribonuclease G; Ribonuclease E/G; Ribonuclease E And G; Ribonuclease Rne/Rng Family Protein; Ribonuclease G And E-Like Protein; RNAse G; Cytoplasmic Axial Filament Ribonuclease G Protein

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MKGQTIILDHIENREAAALMVDGTLQDMLVASDQPRPGTIYRAIADRPVKGQGGMFLKTPDGSAFLRQVKGMAPGQAVLV
QVSGYAEAGKAIPVAQKLLFKSRYVIVTPDAPGLNISRSIRDEAERDRLLEIAHEGAGGSGYGLILRSSCENADEEDIAQ
DIDTMMALASDVLNDAGGDMAVLATGDGPHLLAWRDWVNPGEVVTQAGSFETHGVLDALDRDLGVLQPLDGGASFYIEPT
RALIAVDVNTGRDTSLAAGLNANLACARMLPRALRVKGLGGQIVLDLAPMPKKDRRRFETALRQAFKSCSVETALVGWTP
LGHYELQRKRARVPLHEVLP

Sequences:

>Translated_340_residues
MKGQTIILDHIENREAAALMVDGTLQDMLVASDQPRPGTIYRAIADRPVKGQGGMFLKTPDGSAFLRQVKGMAPGQAVLV
QVSGYAEAGKAIPVAQKLLFKSRYVIVTPDAPGLNISRSIRDEAERDRLLEIAHEGAGGSGYGLILRSSCENADEEDIAQ
DIDTMMALASDVLNDAGGDMAVLATGDGPHLLAWRDWVNPGEVVTQAGSFETHGVLDALDRDLGVLQPLDGGASFYIEPT
RALIAVDVNTGRDTSLAAGLNANLACARMLPRALRVKGLGGQIVLDLAPMPKKDRRRFETALRQAFKSCSVETALVGWTP
LGHYELQRKRARVPLHEVLP
>Mature_340_residues
MKGQTIILDHIENREAAALMVDGTLQDMLVASDQPRPGTIYRAIADRPVKGQGGMFLKTPDGSAFLRQVKGMAPGQAVLV
QVSGYAEAGKAIPVAQKLLFKSRYVIVTPDAPGLNISRSIRDEAERDRLLEIAHEGAGGSGYGLILRSSCENADEEDIAQ
DIDTMMALASDVLNDAGGDMAVLATGDGPHLLAWRDWVNPGEVVTQAGSFETHGVLDALDRDLGVLQPLDGGASFYIEPT
RALIAVDVNTGRDTSLAAGLNANLACARMLPRALRVKGLGGQIVLDLAPMPKKDRRRFETALRQAFKSCSVETALVGWTP
LGHYELQRKRARVPLHEVLP

Specific function: Involved In The Processing Of The 5'End Of 16s Rrna. Could Be Involved In Chromosome Segregation And Cell Division. It May Be One Of The Components Of The Cytoplasmic Axial Filaments Bundles Or Merely Regulate The Formation Of This Structure. [C]

COG id: COG1530

COG function: function code J; Ribonucleases G and E

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082235, Length=334, Percent_Identity=26.3473053892216, Blast_Score=78, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.1.4.- [C]

Molecular weight: Translated: 36494; Mature: 36494

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: PS00211 ABC_TRANSPORTER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGQTIILDHIENREAAALMVDGTLQDMLVASDQPRPGTIYRAIADRPVKGQGGMFLKTP
CCCCEEEEEECCCCCEEEEEECCCHHHHHHHCCCCCCCCEEHHHCCCCCCCCCCEEEECC
DGSAFLRQVKGMAPGQAVLVQVSGYAEAGKAIPVAQKLLFKSRYVIVTPDAPGLNISRSI
CCHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCEEEECCCCCCCCCCHHH
RDEAERDRLLEIAHEGAGGSGYGLILRSSCENADEEDIAQDIDTMMALASDVLNDAGGDM
HHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCE
AVLATGDGPHLLAWRDWVNPGEVVTQAGSFETHGVLDALDRDLGVLQPLDGGASFYIEPT
EEEEECCCCEEEEECCCCCHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEECC
RALIAVDVNTGRDTSLAAGLNANLACARMLPRALRVKGLGGQIVLDLAPMPKKDRRRFET
EEEEEEECCCCCCCEEECCCCCCHHHHHHHHHHHEECCCCCEEEEEECCCCHHHHHHHHH
ALRQAFKSCSVETALVGWTPLGHYELQRKRARVPLHEVLP
HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCHHHHCC
>Mature Secondary Structure
MKGQTIILDHIENREAAALMVDGTLQDMLVASDQPRPGTIYRAIADRPVKGQGGMFLKTP
CCCCEEEEEECCCCCEEEEEECCCHHHHHHHCCCCCCCCEEHHHCCCCCCCCCCEEEECC
DGSAFLRQVKGMAPGQAVLVQVSGYAEAGKAIPVAQKLLFKSRYVIVTPDAPGLNISRSI
CCHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCEEEECCCCCCCCCCHHH
RDEAERDRLLEIAHEGAGGSGYGLILRSSCENADEEDIAQDIDTMMALASDVLNDAGGDM
HHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCE
AVLATGDGPHLLAWRDWVNPGEVVTQAGSFETHGVLDALDRDLGVLQPLDGGASFYIEPT
EEEEECCCCEEEEECCCCCHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEECC
RALIAVDVNTGRDTSLAAGLNANLACARMLPRALRVKGLGGQIVLDLAPMPKKDRRRFET
EEEEEEECCCCCCCEEECCCCCCHHHHHHHHHHHEECCCCCEEEEEECCCCHHHHHHHHH
ALRQAFKSCSVETALVGWTPLGHYELQRKRARVPLHEVLP
HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA