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The map label for this gene is yfdE [H]

Identifier: 110678976

GI number: 110678976

Start: 1607674

End: 1608882

Strand: Reverse

Name: yfdE [H]

Synonym: RD1_1673

Alternate gene names: 110678976

Gene position: 1608882-1607674 (Counterclockwise)

Preceding gene: 110678977

Following gene: 110678975

Centisome position: 38.93

GC content: 61.95

Gene sequence:

>1209_bases
ATGACGGTCGAATCTGAAACTGCTGGCGCGCTCGATGGTCTTGTCGTGCTCGACCTCAGCCGCATTCTCGCCGGGCCGAC
AGCCACGCAGCTGCTCGGGGATCTGGGCGCGACGGTGATAAAGATCGAGAACCCCAAAACGGGGGGCGATGACACACGCG
GATGGGGGCCGAACTATGCGCTGAACGAGGACGGCACGCGCACGGACCTTTCGGCCTATTTCATGGCCGCAAACCGCAAC
AAACAATCGGTAAGCGTTGATCTCTCGACCCCGGATGGACAGGCGATTGTCCAAAAGCTGGCGGCGCGGGCGGATGTGGT
GATCGAAAACTACAAACCCGGTGGTCTGAAAAAATACGGGCTGGATCATGCGACGCTTTGTGCCGCGCATCCGGCGCTGG
TCTATTGCTCAATCTCCGGCTTTGGGCAAACCGGGCCGAACAGGGATCAGCCGGGCTATGACCTGATGGCGCAGGGCTAT
GGCGGCATCATGTCCCTGACGGGGGAACCTGACGGCCAGCCGATGAAGGTTGGCGTCGGGATCGCCGATGTCATGTGCGG
CATGTATGCCACCATCGGCATATTGGCGGCCCTGCGACACCGCGATGCCACCGGCGAGGGGCAGCACATAGACCTCTCTC
TTGTCGATGCGCAGATGGCGTGGCTGATCAATGAGGGGACCAACTATCTCACCTCCGGAAAACTGCCGGTGCGCCGCGGT
AATGCGCATCCCAACATTGTCCCCTACGAAGCCTTTGCCTGTTGCGACGGGCATGTGCTGGTTGCCGTGGGCAATGACGC
GCAATTTGCGCGGTTCTGCGATGTGCTGGGCTGCCCGGAGATGGCAGCCGATGCGCGCTTCAACACGAACCTTGCACGCA
TTGAAAACCGCGATGTGCTGATCCCGCAGATCGCAGATCGACTGTCCCGCATCACCAAGGCGGATCTCATTGCCCGTCTG
AACGCCGTCAAGGTGCCCGTGGGGCCGATCAATACGGTTGCAGAGGCGCTTCATTCCGATCAGGCACAGGCGCGCGGTGT
CGTTCAGGAAATGGCAGCGCCGGGTGTCGAGGGCGGCGCTGTGCGGCTGTTGGGCAACCCGCTGAAGCTGTCACGCACGC
CCGTGCGGTATGACCGGCCGCCGCCGCGTTTTGGCCAAGACACCGAAGCGGTGTTGCGCGAATTCGGCCTGTCCGACGAC
AAGACCTGA

Upstream 100 bases:

>100_bases
GTCACAGTCCACAACCGCGCAGAGCTACGCGACGCGCTTGAAACAGCACTTTCGGCAGAAACGTTTACCGTGATCGCCGC
CAAAATCGAACGGGGGTCCT

Downstream 100 bases:

>100_bases
AAGACATGAAACAGTTGATGCGCAGAATTCCGCTGAAATCATGATGTTGATCGCCTGAAACTGTGAAACATTCATCGTTT
TTCCACACATGCATTCACGT

Product: CAIB/BAIF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 401

Protein sequence:

>402_residues
MTVESETAGALDGLVVLDLSRILAGPTATQLLGDLGATVIKIENPKTGGDDTRGWGPNYALNEDGTRTDLSAYFMAANRN
KQSVSVDLSTPDGQAIVQKLAARADVVIENYKPGGLKKYGLDHATLCAAHPALVYCSISGFGQTGPNRDQPGYDLMAQGY
GGIMSLTGEPDGQPMKVGVGIADVMCGMYATIGILAALRHRDATGEGQHIDLSLVDAQMAWLINEGTNYLTSGKLPVRRG
NAHPNIVPYEAFACCDGHVLVAVGNDAQFARFCDVLGCPEMAADARFNTNLARIENRDVLIPQIADRLSRITKADLIARL
NAVKVPVGPINTVAEALHSDQAQARGVVQEMAAPGVEGGAVRLLGNPLKLSRTPVRYDRPPPRFGQDTEAVLREFGLSDD
KT

Sequences:

>Translated_402_residues
MTVESETAGALDGLVVLDLSRILAGPTATQLLGDLGATVIKIENPKTGGDDTRGWGPNYALNEDGTRTDLSAYFMAANRN
KQSVSVDLSTPDGQAIVQKLAARADVVIENYKPGGLKKYGLDHATLCAAHPALVYCSISGFGQTGPNRDQPGYDLMAQGY
GGIMSLTGEPDGQPMKVGVGIADVMCGMYATIGILAALRHRDATGEGQHIDLSLVDAQMAWLINEGTNYLTSGKLPVRRG
NAHPNIVPYEAFACCDGHVLVAVGNDAQFARFCDVLGCPEMAADARFNTNLARIENRDVLIPQIADRLSRITKADLIARL
NAVKVPVGPINTVAEALHSDQAQARGVVQEMAAPGVEGGAVRLLGNPLKLSRTPVRYDRPPPRFGQDTEAVLREFGLSDD
KT
>Mature_401_residues
TVESETAGALDGLVVLDLSRILAGPTATQLLGDLGATVIKIENPKTGGDDTRGWGPNYALNEDGTRTDLSAYFMAANRNK
QSVSVDLSTPDGQAIVQKLAARADVVIENYKPGGLKKYGLDHATLCAAHPALVYCSISGFGQTGPNRDQPGYDLMAQGYG
GIMSLTGEPDGQPMKVGVGIADVMCGMYATIGILAALRHRDATGEGQHIDLSLVDAQMAWLINEGTNYLTSGKLPVRRGN
AHPNIVPYEAFACCDGHVLVAVGNDAQFARFCDVLGCPEMAADARFNTNLARIENRDVLIPQIADRLSRITKADLIARLN
AVKVPVGPINTVAEALHSDQAQARGVVQEMAAPGVEGGAVRLLGNPLKLSRTPVRYDRPPPRFGQDTEAVLREFGLSDDK
T

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=391, Percent_Identity=39.8976982097187, Blast_Score=300, Evalue=1e-81,
Organism=Homo sapiens, GI300863124, Length=417, Percent_Identity=38.6091127098321, Blast_Score=288, Evalue=5e-78,
Organism=Homo sapiens, GI13376042, Length=417, Percent_Identity=35.2517985611511, Blast_Score=245, Evalue=6e-65,
Organism=Homo sapiens, GI300863126, Length=391, Percent_Identity=36.0613810741688, Blast_Score=244, Evalue=7e-65,
Organism=Homo sapiens, GI42794625, Length=403, Percent_Identity=26.7990074441687, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI266456254, Length=403, Percent_Identity=26.7990074441687, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI266458397, Length=283, Percent_Identity=28.9752650176678, Blast_Score=103, Evalue=4e-22,
Organism=Homo sapiens, GI266458393, Length=224, Percent_Identity=31.6964285714286, Blast_Score=103, Evalue=4e-22,
Organism=Homo sapiens, GI42822893, Length=187, Percent_Identity=27.807486631016, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI266458395, Length=187, Percent_Identity=27.807486631016, Blast_Score=80, Evalue=5e-15,
Organism=Escherichia coli, GI87082093, Length=367, Percent_Identity=38.1471389645777, Blast_Score=265, Evalue=5e-72,
Organism=Escherichia coli, GI1788717, Length=415, Percent_Identity=28.9156626506024, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI1786222, Length=406, Percent_Identity=27.0935960591133, Blast_Score=100, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI32564160, Length=293, Percent_Identity=26.962457337884, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI115535051, Length=260, Percent_Identity=26.9230769230769, Blast_Score=71, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24648431, Length=385, Percent_Identity=40.2597402597403, Blast_Score=288, Evalue=4e-78,
Organism=Drosophila melanogaster, GI24585488, Length=360, Percent_Identity=25.5555555555556, Blast_Score=99, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42690; Mature: 42559

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVESETAGALDGLVVLDLSRILAGPTATQLLGDLGATVIKIENPKTGGDDTRGWGPNYA
CCCCCCCCCCCCCHHHEEHHHHHCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCC
LNEDGTRTDLSAYFMAANRNKQSVSVDLSTPDGQAIVQKLAARADVVIENYKPGGLKKYG
CCCCCCCCHHEEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHCEEEECCCCCCCHHCC
LDHATLCAAHPALVYCSISGFGQTGPNRDQPGYDLMAQGYGGIMSLTGEPDGQPMKVGVG
CCHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCHHHCCCCCCEEEECCCCCCCEEEECCC
IADVMCGMYATIGILAALRHRDATGEGQHIDLSLVDAQMAWLINEGTNYLTSGKLPVRRG
HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECHHEEEEEECCCCEEECCCCEEECC
NAHPNIVPYEAFACCDGHVLVAVGNDAQFARFCDVLGCPEMAADARFNTNLARIENRDVL
CCCCCCCCCHHEEECCCEEEEEECCCCHHHHHHHHHCCCCHHCCCCCCCCCEEECCCCEE
IPQIADRLSRITKADLIARLNAVKVPVGPINTVAEALHSDQAQARGVVQEMAAPGVEGGA
HHHHHHHHHHHHHHHHHHHHCEEECCCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCE
VRLLGNPLKLSRTPVRYDRPPPRFGQDTEAVLREFGLSDDKT
EEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TVESETAGALDGLVVLDLSRILAGPTATQLLGDLGATVIKIENPKTGGDDTRGWGPNYA
CCCCCCCCCCCCHHHEEHHHHHCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCC
LNEDGTRTDLSAYFMAANRNKQSVSVDLSTPDGQAIVQKLAARADVVIENYKPGGLKKYG
CCCCCCCCHHEEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHCEEEECCCCCCCHHCC
LDHATLCAAHPALVYCSISGFGQTGPNRDQPGYDLMAQGYGGIMSLTGEPDGQPMKVGVG
CCHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCHHHCCCCCCEEEECCCCCCCEEEECCC
IADVMCGMYATIGILAALRHRDATGEGQHIDLSLVDAQMAWLINEGTNYLTSGKLPVRRG
HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECHHEEEEEECCCCEEECCCCEEECC
NAHPNIVPYEAFACCDGHVLVAVGNDAQFARFCDVLGCPEMAADARFNTNLARIENRDVL
CCCCCCCCCHHEEECCCEEEEEECCCCHHHHHHHHHCCCCHHCCCCCCCCCEEECCCCEE
IPQIADRLSRITKADLIARLNAVKVPVGPINTVAEALHSDQAQARGVVQEMAAPGVEGGA
HHHHHHHHHHHHHHHHHHHHCEEECCCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCE
VRLLGNPLKLSRTPVRYDRPPPRFGQDTEAVLREFGLSDDKT
EEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]