| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is norQ [H]
Identifier: 110678867
GI number: 110678867
Start: 1482774
End: 1483586
Strand: Reverse
Name: norQ [H]
Synonym: RD1_1560
Alternate gene names: 110678867
Gene position: 1483586-1482774 (Counterclockwise)
Preceding gene: 110678868
Following gene: 110678866
Centisome position: 35.9
GC content: 60.27
Gene sequence:
>813_bases ATGAACATGCAATCTCCCACACTTGACAAGGGGGCGGCTGACGCCCCCTTTTACATGCCTCAAGGTTCCGAATGTGAGCT GTTCGAGGCGGCCTATGAAACCAATATGCCGCTTTTGCTCAAAGGGCCGACAGGGTGCGGCAAGACCCGTTTTGTCAGCC ATATGGCGGCGCGCCTTGGTCGCCCGCTTTATACCGTGGCCTGTCATGACGATCTGTCTGCGGCCGATCTGATCGGGCGC TATCTGCTCAAGGGCGGCGATACCGTCTGGGCCGATGGCCCGCTGACCCGTGCTGTGCGCGAAGGTGCGATCTGTTATCT CGATGAGGTTGTAGAGGCCCGCAAGGACGTCACCGTCGTGCTGCACCCGCTGACCGATGACCGGCGCATCCTGCCGATTG ACCGCACTGGCGAAACGCTGGAGGCCGCGCCCGGCTTCATGCTGGTGGCTTCCTATAACCCCGGCTATCAGAATATCCTC AAGACGCTCAAACCCTCGACCCGCCAGCGGTTCTTGTCAGCCACTTTCGATTTCCCCCCGATGGATCAGGAGGTTGCGAT TGTCGCGCAGGAAAGCGGGCTGGAAAGCGATCGTTGCCAGAACCTCGTGCGTCTTGCGGGCAAGTTTCGCGCGCTCAAGG GGCAGGATATCGAGGAAGGTGTTTCAACCCGGCTGGTGATCTATACCGCAACGCTGATCGCCAAGGGCATGCCGCTCGAA CAGGCCATCCACGCGGCGATGATCGAACCGCTGTCCGATGACGAGGACGTGCAGCAGGGCCTGAACGATATCGTCACGGC GGTCTTTGGCTAA
Upstream 100 bases:
>100_bases GCATCGCCGTGGTCCTTGGGGCGCTGTTGTTCATCTACGCCGTGGCAGTCCCCCGCAAGGAGATCATCTCGCCCAGCGAC AAACAACCGGTGGCTGCGGA
Downstream 100 bases:
>100_bases GCCATGTCGGACGCGTTGGAACCTTGGGAGCCGGAAGAAACCATCGGCAAGATCTGGCACCGCTGGGCCAGCCATTTTGA CGCGCCCGAACCCACGCACC
Product: denitrification regulatory protein nirQ
Products: nitric oxide; reduced acceptor
Alternate protein names: NA
Number of amino acids: Translated: 270; Mature: 270
Protein sequence:
>270_residues MNMQSPTLDKGAADAPFYMPQGSECELFEAAYETNMPLLLKGPTGCGKTRFVSHMAARLGRPLYTVACHDDLSAADLIGR YLLKGGDTVWADGPLTRAVREGAICYLDEVVEARKDVTVVLHPLTDDRRILPIDRTGETLEAAPGFMLVASYNPGYQNIL KTLKPSTRQRFLSATFDFPPMDQEVAIVAQESGLESDRCQNLVRLAGKFRALKGQDIEEGVSTRLVIYTATLIAKGMPLE QAIHAAMIEPLSDDEDVQQGLNDIVTAVFG
Sequences:
>Translated_270_residues MNMQSPTLDKGAADAPFYMPQGSECELFEAAYETNMPLLLKGPTGCGKTRFVSHMAARLGRPLYTVACHDDLSAADLIGR YLLKGGDTVWADGPLTRAVREGAICYLDEVVEARKDVTVVLHPLTDDRRILPIDRTGETLEAAPGFMLVASYNPGYQNIL KTLKPSTRQRFLSATFDFPPMDQEVAIVAQESGLESDRCQNLVRLAGKFRALKGQDIEEGVSTRLVIYTATLIAKGMPLE QAIHAAMIEPLSDDEDVQQGLNDIVTAVFG >Mature_270_residues MNMQSPTLDKGAADAPFYMPQGSECELFEAAYETNMPLLLKGPTGCGKTRFVSHMAARLGRPLYTVACHDDLSAADLIGR YLLKGGDTVWADGPLTRAVREGAICYLDEVVEARKDVTVVLHPLTDDRRILPIDRTGETLEAAPGFMLVASYNPGYQNIL KTLKPSTRQRFLSATFDFPPMDQEVAIVAQESGLESDRCQNLVRLAGKFRALKGQDIEEGVSTRLVIYTATLIAKGMPLE QAIHAAMIEPLSDDEDVQQGLNDIVTAVFG
Specific function: Unknown
COG id: COG0714
COG function: function code R; MoxR-like ATPases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CbbQ/NirQ/NorQ/GpvN family [H]
Homologues:
Organism=Homo sapiens, GI24415404, Length=171, Percent_Identity=33.3333333333333, Blast_Score=85, Evalue=8e-17, Organism=Caenorhabditis elegans, GI25145616, Length=150, Percent_Identity=35.3333333333333, Blast_Score=80, Evalue=1e-15, Organism=Saccharomyces cerevisiae, GI6323135, Length=201, Percent_Identity=32.3383084577114, Blast_Score=83, Evalue=5e-17, Organism=Drosophila melanogaster, GI161076560, Length=155, Percent_Identity=33.5483870967742, Blast_Score=81, Evalue=8e-16, Organism=Drosophila melanogaster, GI161076562, Length=155, Percent_Identity=33.5483870967742, Blast_Score=81, Evalue=9e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011704 - InterPro: IPR013615 [H]
Pfam domain/function: PF07728 AAA_5; PF08406 CbbQ_C [H]
EC number: 1.7.99.7
Molecular weight: Translated: 29508; Mature: 29508
Theoretical pI: Translated: 4.63; Mature: 4.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNMQSPTLDKGAADAPFYMPQGSECELFEAAYETNMPLLLKGPTGCGKTRFVSHMAARLG CCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHC RPLYTVACHDDLSAADLIGRYLLKGGDTVWADGPLTRAVREGAICYLDEVVEARKDVTVV CCEEEEEECCCCHHHHHHHHHHHCCCCEEECCCHHHHHHHCCCHHHHHHHHHHCCCEEEE LHPLTDDRRILPIDRTGETLEAAPGFMLVASYNPGYQNILKTLKPSTRQRFLSATFDFPP EEECCCCCEEEECCCCCCHHHCCCCEEEEEECCCCHHHHHHHHCCHHHHHHHHHCCCCCC MDQEVAIVAQESGLESDRCQNLVRLAGKFRALKGQDIEEGVSTRLVIYTATLIAKGMPLE CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHEEHEEEHHHHHCCCCHH QAIHAAMIEPLSDDEDVQQGLNDIVTAVFG HHHHHHHHCCCCCHHHHHHHHHHHHHHHCC >Mature Secondary Structure MNMQSPTLDKGAADAPFYMPQGSECELFEAAYETNMPLLLKGPTGCGKTRFVSHMAARLG CCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHC RPLYTVACHDDLSAADLIGRYLLKGGDTVWADGPLTRAVREGAICYLDEVVEARKDVTVV CCEEEEEECCCCHHHHHHHHHHHCCCCEEECCCHHHHHHHCCCHHHHHHHHHHCCCEEEE LHPLTDDRRILPIDRTGETLEAAPGFMLVASYNPGYQNILKTLKPSTRQRFLSATFDFPP EEECCCCCEEEECCCCCCHHHCCCCEEEEEECCCCHHHHHHHHCCHHHHHHHHHCCCCCC MDQEVAIVAQESGLESDRCQNLVRLAGKFRALKGQDIEEGVSTRLVIYTATLIAKGMPLE CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHEEHEEEHHHHHCCCCHH QAIHAAMIEPLSDDEDVQQGLNDIVTAVFG HHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: nitrous oxide; acceptor; H2O
Specific reaction: nitrous oxide + acceptor + H2O = 2 nitric oxide + reduced acceptor
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9022686 [H]