| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is Hnr [H]
Identifier: 110678845
GI number: 110678845
Start: 1458499
End: 1459989
Strand: Direct
Name: Hnr [H]
Synonym: RD1_1534
Alternate gene names: 110678845
Gene position: 1458499-1459989 (Clockwise)
Preceding gene: 110678844
Following gene: 110678846
Centisome position: 35.29
GC content: 61.5
Gene sequence:
>1491_bases ATGGATAAACCAGCCCGCGTCAAACCCGAGAAAATCCGCTGCGATGCCTGCCCGGTGCTGTGCTATATCGCGGATGGGAA AACCGGCGCTTGTGATCGCTATGCCAACTCGGGCGGTGAGTTGATCCGGCTGGACCCGCTGACGATTATCGAAGGGGCGC GCGAGAAGGGCGTGCAATCGGTGCCCTTCCTGAATGGGGGCGATGGGCAGGATTGGGACGGGGATCTGGTGCAGGCCAAC CGCCCCTTTATCACCGCCGTCGGGGCCGGCACCACCTATCCCGATTACAAACCAGCACCCTTTATCGTCAGCCAGACGGT CGATGATGCGGATATGGTGACCGTCGTGACCGAGGGGATTTTCAGCTACTGCGGCGTGAAGGTCAAGATCGACACGGACC GTTTCCTTGGCCACGAGCGCGAGATCGTCCGCTGTCAGGGGGAACCCGTGGGCCATGTGATGACCAGCGAATATGGCTCC AAGATGTTGTCGCTGGGCGGGGTGGAACACCTGACGGGTGGCACCAAGAAAGAGGGGCGTGTGACCTGTGACACGTTGCT CAAGCTGTGCAATTGCGAAGCAGTCGAACTGACCATCGACAACGGCGTGACCATCGTGGTTCAGGCGGGCAAGCCGCCGA TTGTGAACGGAGTGCCGGAAAAGCTGATGCGCGTGGGCTGCGGTTCTGCTGCTATCGGGATGTTCGCCTCGCAATGGGTG GATCATGTGGATGAGGTTGTTGTGGTCGATGACCATATCACCGGGGTTCTGTCCGAGCATCAGGCGGGCAAGATGCTGGA CGTGCCCCCCACGGGCATCAAGATAAATGGCCGCCGCTCGACTCCGGGGCGCTATTTTCAGGTGGCCGAGCCCGGCACCG GCTGGGGCGGTACCGATGTGGATGATCCGTTGACGATCCTCAAGCCGTGGAACGCCGATGTGGCGTGGGAAGGGTTGCGC CTGCTGATGGTCTCGACCACAGGCGAGCAATACGCCTATTTCGAACTTGATGCGGATCTGCAACCGCAACCAAGGCCCCT GCCCGAAGCGCTGCGCGTGTCGGTCGACCGAATTGCAGAGAACTGTGAACCTTCGGTTTGTTCGGTGCTGTTCATGGGGG GCGCTGGCGGGTCGCTGCGTGCCGGGGTGACGGAAAACCCCGTCAAGCTGACGAATTCAGTCAAGGAGTCGCTGACCCAT GTGTCGTGCGGCGGGGCGAACGCCTATGTCTGGCCCGGCGGCGGGATCACGGTCATGGCGGATGTGTTGGAAATGCCGTC AAACTCCTTTGGCTATGTGCCGACCCCGGCGCTGGTCGCCCCGATCGAATTCACGATGCGCCTTTCAGATTATGCAGCCC TTGGCGGGCATGTCGAAGCCGTGCGCCCGATTGATGAGGTGCTCACACCCGATGTTCGGCGGGTGGATCAGATCGACCCG GACGCAAACCCGACCGCGCGGCACAATTACCGCTGGCGCCCGGAGCAATGA
Upstream 100 bases:
>100_bases CCTGCCTTGCTGAACGCGATCACCCATGCCACCGGCGTGCGGGTGGCTTCGGTTCCCGTCACACCTGCAAAACTGCGCAA GGCCATTCGGAGCAAGACCA
Downstream 100 bases:
>100_bases GCCCATGAGCAAACCGGTCGCGGCACTGCTGGAGGGGGGGCGCAGGCTGCATTTGCAGCACGGGCCGATTGATCTGATTA TCGGTGCTGACCCTGAGGGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 496; Mature: 496
Protein sequence:
>496_residues MDKPARVKPEKIRCDACPVLCYIADGKTGACDRYANSGGELIRLDPLTIIEGAREKGVQSVPFLNGGDGQDWDGDLVQAN RPFITAVGAGTTYPDYKPAPFIVSQTVDDADMVTVVTEGIFSYCGVKVKIDTDRFLGHEREIVRCQGEPVGHVMTSEYGS KMLSLGGVEHLTGGTKKEGRVTCDTLLKLCNCEAVELTIDNGVTIVVQAGKPPIVNGVPEKLMRVGCGSAAIGMFASQWV DHVDEVVVVDDHITGVLSEHQAGKMLDVPPTGIKINGRRSTPGRYFQVAEPGTGWGGTDVDDPLTILKPWNADVAWEGLR LLMVSTTGEQYAYFELDADLQPQPRPLPEALRVSVDRIAENCEPSVCSVLFMGGAGGSLRAGVTENPVKLTNSVKESLTH VSCGGANAYVWPGGGITVMADVLEMPSNSFGYVPTPALVAPIEFTMRLSDYAALGGHVEAVRPIDEVLTPDVRRVDQIDP DANPTARHNYRWRPEQ
Sequences:
>Translated_496_residues MDKPARVKPEKIRCDACPVLCYIADGKTGACDRYANSGGELIRLDPLTIIEGAREKGVQSVPFLNGGDGQDWDGDLVQAN RPFITAVGAGTTYPDYKPAPFIVSQTVDDADMVTVVTEGIFSYCGVKVKIDTDRFLGHEREIVRCQGEPVGHVMTSEYGS KMLSLGGVEHLTGGTKKEGRVTCDTLLKLCNCEAVELTIDNGVTIVVQAGKPPIVNGVPEKLMRVGCGSAAIGMFASQWV DHVDEVVVVDDHITGVLSEHQAGKMLDVPPTGIKINGRRSTPGRYFQVAEPGTGWGGTDVDDPLTILKPWNADVAWEGLR LLMVSTTGEQYAYFELDADLQPQPRPLPEALRVSVDRIAENCEPSVCSVLFMGGAGGSLRAGVTENPVKLTNSVKESLTH VSCGGANAYVWPGGGITVMADVLEMPSNSFGYVPTPALVAPIEFTMRLSDYAALGGHVEAVRPIDEVLTPDVRRVDQIDP DANPTARHNYRWRPEQ >Mature_496_residues MDKPARVKPEKIRCDACPVLCYIADGKTGACDRYANSGGELIRLDPLTIIEGAREKGVQSVPFLNGGDGQDWDGDLVQAN RPFITAVGAGTTYPDYKPAPFIVSQTVDDADMVTVVTEGIFSYCGVKVKIDTDRFLGHEREIVRCQGEPVGHVMTSEYGS KMLSLGGVEHLTGGTKKEGRVTCDTLLKLCNCEAVELTIDNGVTIVVQAGKPPIVNGVPEKLMRVGCGSAAIGMFASQWV DHVDEVVVVDDHITGVLSEHQAGKMLDVPPTGIKINGRRSTPGRYFQVAEPGTGWGGTDVDDPLTILKPWNADVAWEGLR LLMVSTTGEQYAYFELDADLQPQPRPLPEALRVSVDRIAENCEPSVCSVLFMGGAGGSLRAGVTENPVKLTNSVKESLTH VSCGGANAYVWPGGGITVMADVLEMPSNSFGYVPTPALVAPIEFTMRLSDYAALGGHVEAVRPIDEVLTPDVRRVDQIDP DANPTARHNYRWRPEQ
Specific function: Catalyzes the reversible reduction of 6- hydroxynicotinate to 6-oxo-1,4,5,6-tetrahydronicotinate [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001450 - InterPro: IPR017896 - InterPro: IPR017900 [H]
Pfam domain/function: PF00037 Fer4 [H]
EC number: =1.3.7.1 [H]
Molecular weight: Translated: 53378; Mature: 53378
Theoretical pI: Translated: 4.65; Mature: 4.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKPARVKPEKIRCDACPVLCYIADGKTGACDRYANSGGELIRLDPLTIIEGAREKGVQS CCCCCCCCHHHEECCCCCEEEEEECCCCCCCHHHHCCCCCEEEECCHHEECCHHHCCCCC VPFLNGGDGQDWDGDLVQANRPFITAVGAGTTYPDYKPAPFIVSQTVDDADMVTVVTEGI CCEEECCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCEEEECCCCCCHHHHHHHHHH FSYCGVKVKIDTDRFLGHEREIVRCQGEPVGHVMTSEYGSKMLSLGGVEHLTGGTKKEGR HHHCCEEEEECHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCCC VTCDTLLKLCNCEAVELTIDNGVTIVVQAGKPPIVNGVPEKLMRVGCGSAAIGMFASQWV EEHHHHHHHHCCCEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHH DHVDEVVVVDDHITGVLSEHQAGKMLDVPPTGIKINGRRSTPGRYFQVAEPGTGWGGTDV HHCCCEEEECCCHHHHHHHCCCCCEECCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCC DDPLTILKPWNADVAWEGLRLLMVSTTGEQYAYFELDADLQPQPRPLPEALRVSVDRIAE CCCEEEEECCCCCEEECCEEEEEEEECCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHH NCEPSVCSVLFMGGAGGSLRAGVTENPVKLTNSVKESLTHVSCGGANAYVWPGGGITVMA CCCCCEEEEEEECCCCCCEECCCCCCCHHHHHHHHHHHHEEECCCCCEEEECCCCHHHHH DVLEMPSNSFGYVPTPALVAPIEFTMRLSDYAALGGHVEAVRPIDEVLTPDVRRVDQIDP HHHHCCCCCCCCCCCCCEEECCCEEEEEHHHHHCCCCCHHHCCHHHHHCCCHHHHHCCCC DANPTARHNYRWRPEQ CCCCCCCCCCCCCCCC >Mature Secondary Structure MDKPARVKPEKIRCDACPVLCYIADGKTGACDRYANSGGELIRLDPLTIIEGAREKGVQS CCCCCCCCHHHEECCCCCEEEEEECCCCCCCHHHHCCCCCEEEECCHHEECCHHHCCCCC VPFLNGGDGQDWDGDLVQANRPFITAVGAGTTYPDYKPAPFIVSQTVDDADMVTVVTEGI CCEEECCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCEEEECCCCCCHHHHHHHHHH FSYCGVKVKIDTDRFLGHEREIVRCQGEPVGHVMTSEYGSKMLSLGGVEHLTGGTKKEGR HHHCCEEEEECHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCCC VTCDTLLKLCNCEAVELTIDNGVTIVVQAGKPPIVNGVPEKLMRVGCGSAAIGMFASQWV EEHHHHHHHHCCCEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHH DHVDEVVVVDDHITGVLSEHQAGKMLDVPPTGIKINGRRSTPGRYFQVAEPGTGWGGTDV HHCCCEEEECCCHHHHHHHCCCCCEECCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCC DDPLTILKPWNADVAWEGLRLLMVSTTGEQYAYFELDADLQPQPRPLPEALRVSVDRIAE CCCEEEEECCCCCEEECCEEEEEEEECCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHH NCEPSVCSVLFMGGAGGSLRAGVTENPVKLTNSVKESLTHVSCGGANAYVWPGGGITVMA CCCCCEEEEEEECCCCCCEECCCCCCCHHHHHHHHHHHHEEECCCCCEEEECCCCHHHHH DVLEMPSNSFGYVPTPALVAPIEFTMRLSDYAALGGHVEAVRPIDEVLTPDVRRVDQIDP HHHHCCCCCCCCCCCCCEEECCCEEEEEHHHHHCCCCCHHHCCHHHHHCCCHHHHHCCCC DANPTARHNYRWRPEQ CCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA