Definition Roseobacter denitrificans OCh 114, complete genome.
Accession NC_008209
Length 4,133,097

Click here to switch to the map view.

The map label for this gene is Hnr [H]

Identifier: 110678845

GI number: 110678845

Start: 1458499

End: 1459989

Strand: Direct

Name: Hnr [H]

Synonym: RD1_1534

Alternate gene names: 110678845

Gene position: 1458499-1459989 (Clockwise)

Preceding gene: 110678844

Following gene: 110678846

Centisome position: 35.29

GC content: 61.5

Gene sequence:

>1491_bases
ATGGATAAACCAGCCCGCGTCAAACCCGAGAAAATCCGCTGCGATGCCTGCCCGGTGCTGTGCTATATCGCGGATGGGAA
AACCGGCGCTTGTGATCGCTATGCCAACTCGGGCGGTGAGTTGATCCGGCTGGACCCGCTGACGATTATCGAAGGGGCGC
GCGAGAAGGGCGTGCAATCGGTGCCCTTCCTGAATGGGGGCGATGGGCAGGATTGGGACGGGGATCTGGTGCAGGCCAAC
CGCCCCTTTATCACCGCCGTCGGGGCCGGCACCACCTATCCCGATTACAAACCAGCACCCTTTATCGTCAGCCAGACGGT
CGATGATGCGGATATGGTGACCGTCGTGACCGAGGGGATTTTCAGCTACTGCGGCGTGAAGGTCAAGATCGACACGGACC
GTTTCCTTGGCCACGAGCGCGAGATCGTCCGCTGTCAGGGGGAACCCGTGGGCCATGTGATGACCAGCGAATATGGCTCC
AAGATGTTGTCGCTGGGCGGGGTGGAACACCTGACGGGTGGCACCAAGAAAGAGGGGCGTGTGACCTGTGACACGTTGCT
CAAGCTGTGCAATTGCGAAGCAGTCGAACTGACCATCGACAACGGCGTGACCATCGTGGTTCAGGCGGGCAAGCCGCCGA
TTGTGAACGGAGTGCCGGAAAAGCTGATGCGCGTGGGCTGCGGTTCTGCTGCTATCGGGATGTTCGCCTCGCAATGGGTG
GATCATGTGGATGAGGTTGTTGTGGTCGATGACCATATCACCGGGGTTCTGTCCGAGCATCAGGCGGGCAAGATGCTGGA
CGTGCCCCCCACGGGCATCAAGATAAATGGCCGCCGCTCGACTCCGGGGCGCTATTTTCAGGTGGCCGAGCCCGGCACCG
GCTGGGGCGGTACCGATGTGGATGATCCGTTGACGATCCTCAAGCCGTGGAACGCCGATGTGGCGTGGGAAGGGTTGCGC
CTGCTGATGGTCTCGACCACAGGCGAGCAATACGCCTATTTCGAACTTGATGCGGATCTGCAACCGCAACCAAGGCCCCT
GCCCGAAGCGCTGCGCGTGTCGGTCGACCGAATTGCAGAGAACTGTGAACCTTCGGTTTGTTCGGTGCTGTTCATGGGGG
GCGCTGGCGGGTCGCTGCGTGCCGGGGTGACGGAAAACCCCGTCAAGCTGACGAATTCAGTCAAGGAGTCGCTGACCCAT
GTGTCGTGCGGCGGGGCGAACGCCTATGTCTGGCCCGGCGGCGGGATCACGGTCATGGCGGATGTGTTGGAAATGCCGTC
AAACTCCTTTGGCTATGTGCCGACCCCGGCGCTGGTCGCCCCGATCGAATTCACGATGCGCCTTTCAGATTATGCAGCCC
TTGGCGGGCATGTCGAAGCCGTGCGCCCGATTGATGAGGTGCTCACACCCGATGTTCGGCGGGTGGATCAGATCGACCCG
GACGCAAACCCGACCGCGCGGCACAATTACCGCTGGCGCCCGGAGCAATGA

Upstream 100 bases:

>100_bases
CCTGCCTTGCTGAACGCGATCACCCATGCCACCGGCGTGCGGGTGGCTTCGGTTCCCGTCACACCTGCAAAACTGCGCAA
GGCCATTCGGAGCAAGACCA

Downstream 100 bases:

>100_bases
GCCCATGAGCAAACCGGTCGCGGCACTGCTGGAGGGGGGGCGCAGGCTGCATTTGCAGCACGGGCCGATTGATCTGATTA
TCGGTGCTGACCCTGAGGGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 496; Mature: 496

Protein sequence:

>496_residues
MDKPARVKPEKIRCDACPVLCYIADGKTGACDRYANSGGELIRLDPLTIIEGAREKGVQSVPFLNGGDGQDWDGDLVQAN
RPFITAVGAGTTYPDYKPAPFIVSQTVDDADMVTVVTEGIFSYCGVKVKIDTDRFLGHEREIVRCQGEPVGHVMTSEYGS
KMLSLGGVEHLTGGTKKEGRVTCDTLLKLCNCEAVELTIDNGVTIVVQAGKPPIVNGVPEKLMRVGCGSAAIGMFASQWV
DHVDEVVVVDDHITGVLSEHQAGKMLDVPPTGIKINGRRSTPGRYFQVAEPGTGWGGTDVDDPLTILKPWNADVAWEGLR
LLMVSTTGEQYAYFELDADLQPQPRPLPEALRVSVDRIAENCEPSVCSVLFMGGAGGSLRAGVTENPVKLTNSVKESLTH
VSCGGANAYVWPGGGITVMADVLEMPSNSFGYVPTPALVAPIEFTMRLSDYAALGGHVEAVRPIDEVLTPDVRRVDQIDP
DANPTARHNYRWRPEQ

Sequences:

>Translated_496_residues
MDKPARVKPEKIRCDACPVLCYIADGKTGACDRYANSGGELIRLDPLTIIEGAREKGVQSVPFLNGGDGQDWDGDLVQAN
RPFITAVGAGTTYPDYKPAPFIVSQTVDDADMVTVVTEGIFSYCGVKVKIDTDRFLGHEREIVRCQGEPVGHVMTSEYGS
KMLSLGGVEHLTGGTKKEGRVTCDTLLKLCNCEAVELTIDNGVTIVVQAGKPPIVNGVPEKLMRVGCGSAAIGMFASQWV
DHVDEVVVVDDHITGVLSEHQAGKMLDVPPTGIKINGRRSTPGRYFQVAEPGTGWGGTDVDDPLTILKPWNADVAWEGLR
LLMVSTTGEQYAYFELDADLQPQPRPLPEALRVSVDRIAENCEPSVCSVLFMGGAGGSLRAGVTENPVKLTNSVKESLTH
VSCGGANAYVWPGGGITVMADVLEMPSNSFGYVPTPALVAPIEFTMRLSDYAALGGHVEAVRPIDEVLTPDVRRVDQIDP
DANPTARHNYRWRPEQ
>Mature_496_residues
MDKPARVKPEKIRCDACPVLCYIADGKTGACDRYANSGGELIRLDPLTIIEGAREKGVQSVPFLNGGDGQDWDGDLVQAN
RPFITAVGAGTTYPDYKPAPFIVSQTVDDADMVTVVTEGIFSYCGVKVKIDTDRFLGHEREIVRCQGEPVGHVMTSEYGS
KMLSLGGVEHLTGGTKKEGRVTCDTLLKLCNCEAVELTIDNGVTIVVQAGKPPIVNGVPEKLMRVGCGSAAIGMFASQWV
DHVDEVVVVDDHITGVLSEHQAGKMLDVPPTGIKINGRRSTPGRYFQVAEPGTGWGGTDVDDPLTILKPWNADVAWEGLR
LLMVSTTGEQYAYFELDADLQPQPRPLPEALRVSVDRIAENCEPSVCSVLFMGGAGGSLRAGVTENPVKLTNSVKESLTH
VSCGGANAYVWPGGGITVMADVLEMPSNSFGYVPTPALVAPIEFTMRLSDYAALGGHVEAVRPIDEVLTPDVRRVDQIDP
DANPTARHNYRWRPEQ

Specific function: Catalyzes the reversible reduction of 6- hydroxynicotinate to 6-oxo-1,4,5,6-tetrahydronicotinate [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900 [H]

Pfam domain/function: PF00037 Fer4 [H]

EC number: =1.3.7.1 [H]

Molecular weight: Translated: 53378; Mature: 53378

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKPARVKPEKIRCDACPVLCYIADGKTGACDRYANSGGELIRLDPLTIIEGAREKGVQS
CCCCCCCCHHHEECCCCCEEEEEECCCCCCCHHHHCCCCCEEEECCHHEECCHHHCCCCC
VPFLNGGDGQDWDGDLVQANRPFITAVGAGTTYPDYKPAPFIVSQTVDDADMVTVVTEGI
CCEEECCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCEEEECCCCCCHHHHHHHHHH
FSYCGVKVKIDTDRFLGHEREIVRCQGEPVGHVMTSEYGSKMLSLGGVEHLTGGTKKEGR
HHHCCEEEEECHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCCC
VTCDTLLKLCNCEAVELTIDNGVTIVVQAGKPPIVNGVPEKLMRVGCGSAAIGMFASQWV
EEHHHHHHHHCCCEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
DHVDEVVVVDDHITGVLSEHQAGKMLDVPPTGIKINGRRSTPGRYFQVAEPGTGWGGTDV
HHCCCEEEECCCHHHHHHHCCCCCEECCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCC
DDPLTILKPWNADVAWEGLRLLMVSTTGEQYAYFELDADLQPQPRPLPEALRVSVDRIAE
CCCEEEEECCCCCEEECCEEEEEEEECCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHH
NCEPSVCSVLFMGGAGGSLRAGVTENPVKLTNSVKESLTHVSCGGANAYVWPGGGITVMA
CCCCCEEEEEEECCCCCCEECCCCCCCHHHHHHHHHHHHEEECCCCCEEEECCCCHHHHH
DVLEMPSNSFGYVPTPALVAPIEFTMRLSDYAALGGHVEAVRPIDEVLTPDVRRVDQIDP
HHHHCCCCCCCCCCCCCEEECCCEEEEEHHHHHCCCCCHHHCCHHHHHCCCHHHHHCCCC
DANPTARHNYRWRPEQ
CCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDKPARVKPEKIRCDACPVLCYIADGKTGACDRYANSGGELIRLDPLTIIEGAREKGVQS
CCCCCCCCHHHEECCCCCEEEEEECCCCCCCHHHHCCCCCEEEECCHHEECCHHHCCCCC
VPFLNGGDGQDWDGDLVQANRPFITAVGAGTTYPDYKPAPFIVSQTVDDADMVTVVTEGI
CCEEECCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCEEEECCCCCCHHHHHHHHHH
FSYCGVKVKIDTDRFLGHEREIVRCQGEPVGHVMTSEYGSKMLSLGGVEHLTGGTKKEGR
HHHCCEEEEECHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCCC
VTCDTLLKLCNCEAVELTIDNGVTIVVQAGKPPIVNGVPEKLMRVGCGSAAIGMFASQWV
EEHHHHHHHHCCCEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
DHVDEVVVVDDHITGVLSEHQAGKMLDVPPTGIKINGRRSTPGRYFQVAEPGTGWGGTDV
HHCCCEEEECCCHHHHHHHCCCCCEECCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCC
DDPLTILKPWNADVAWEGLRLLMVSTTGEQYAYFELDADLQPQPRPLPEALRVSVDRIAE
CCCEEEEECCCCCEEECCEEEEEEEECCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHH
NCEPSVCSVLFMGGAGGSLRAGVTENPVKLTNSVKESLTHVSCGGANAYVWPGGGITVMA
CCCCCEEEEEEECCCCCCEECCCCCCCHHHHHHHHHHHHEEECCCCCEEEECCCCHHHHH
DVLEMPSNSFGYVPTPALVAPIEFTMRLSDYAALGGHVEAVRPIDEVLTPDVRRVDQIDP
HHHHCCCCCCCCCCCCCEEECCCEEEEEHHHHHCCCCCHHHCCHHHHHCCCHHHHHCCCC
DANPTARHNYRWRPEQ
CCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA