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The map label for this gene is 110678837

Identifier: 110678837

GI number: 110678837

Start: 1446993

End: 1447982

Strand: Direct

Name: 110678837

Synonym: RD1_1525

Alternate gene names: NA

Gene position: 1446993-1447982 (Clockwise)

Preceding gene: 110678833

Following gene: 110678838

Centisome position: 35.01

GC content: 59.7

Gene sequence:

>990_bases
TTGCCTAGATTATTTCAGTTTGTCGCAGCCGCCGCGATCTCCGGCGTTGCATTTTCAGCATCCGCACCGGCCCATGCCGG
AAACAACATCACGCTTTGTGGTGGCAGCCCGGGTGGTCTGTGGTCCCTGTTGGGCGCTGGCATCGACGCCGCCGTGCGAA
AGGTCGATCCGGAGTCGAATGTGACCTATCAAACATCCAGCGGTGGCTTTGCCAATATCGTGCAGGTCAATCAGGGCAAG
TGTGATCTGGCCATCGTTCACGTCGGCGAGGTGGCCATCGCCGCGCGGGGCGAAGCCCCGTTCAGGGAGCCGACGGGCGG
TGTTGCTGCTGTTGCGCTTCTTTACAACTGGGCGCCGATGCAATGGGTCACGGACAAATCCTTTGCGCAGGAGAACGGGA
TTGAATCCATCAGTGATCTGGCGGCGCTGGAAGGCGAATACAATCTGGTGGTAAACCGCCGAGGCATCCTGCCGTCGATC
CTAGCGGAGAAGTCGCTCGAAGCCTCGGGCATAACCTTTGAGGCCATCGAAGGCAAAGGCGGCAGTGTGCAGTTTCAGGG
CTCCAGCACTGCCTCCGAGATCATGCAGAACGGGCGTGCGGATACGTGGGTCAACGCAACATTCGTCGGAAGCGGAAGCA
TCAATTCCATCGCGTCAAAGCGGGACCTGACGTTGTTGTCCGTCTCCGATGATGTGATCGCCGCCATGCAGGACGCCTAT
GGCTCAACGGCTGTGACCATCCCGGCAGGTGCCTACGAATGGCTTGATCGCGACATCAAGACCTTTGGCGCACAGGCGGC
ACTGATCGCCGCAGAAGGGGCTGATCCCGAAATCGTCGGTCTGGTTGCCAAGGCGATCTACGAAAACGTCGGCGAAATTC
AGGGTGTGCACAAAGCCATGGGGGCCTTCAACGCAGACCTCGGGGCCTCGATCACGCTGATCGACTACCACCCTGCGGCG
ATGGCTGCGATCAAGGCTGCTGGCAGCTAA

Upstream 100 bases:

>100_bases
TTGCCGTGTGAGCGGTGGCTAGAAATTCCTTGACTCAATTCCAAGCCTATTGTCTCGTTTGTATGCGAACAAAAAAATGA
TATCCATCGGGAGAGTAAAA

Downstream 100 bases:

>100_bases
ACCGCGCGATCATTCCGGCGTGGGCACAAGGGGCGCGCCGGTGTGTACTCGCGTGCTGTTGAGACGATCGAAAGGCACCC
AATGTCGGCACCTGGAATAC

Product: immunogenic protein, putative

Products: NA

Alternate protein names: TRAP Transporter Solute Receptor; TRAP Transporter Solute Receptor TAXI Family Protein; Immunogenic Protein; TRAP-T Family Transporter

Number of amino acids: Translated: 329; Mature: 328

Protein sequence:

>329_residues
MPRLFQFVAAAAISGVAFSASAPAHAGNNITLCGGSPGGLWSLLGAGIDAAVRKVDPESNVTYQTSSGGFANIVQVNQGK
CDLAIVHVGEVAIAARGEAPFREPTGGVAAVALLYNWAPMQWVTDKSFAQENGIESISDLAALEGEYNLVVNRRGILPSI
LAEKSLEASGITFEAIEGKGGSVQFQGSSTASEIMQNGRADTWVNATFVGSGSINSIASKRDLTLLSVSDDVIAAMQDAY
GSTAVTIPAGAYEWLDRDIKTFGAQAALIAAEGADPEIVGLVAKAIYENVGEIQGVHKAMGAFNADLGASITLIDYHPAA
MAAIKAAGS

Sequences:

>Translated_329_residues
MPRLFQFVAAAAISGVAFSASAPAHAGNNITLCGGSPGGLWSLLGAGIDAAVRKVDPESNVTYQTSSGGFANIVQVNQGK
CDLAIVHVGEVAIAARGEAPFREPTGGVAAVALLYNWAPMQWVTDKSFAQENGIESISDLAALEGEYNLVVNRRGILPSI
LAEKSLEASGITFEAIEGKGGSVQFQGSSTASEIMQNGRADTWVNATFVGSGSINSIASKRDLTLLSVSDDVIAAMQDAY
GSTAVTIPAGAYEWLDRDIKTFGAQAALIAAEGADPEIVGLVAKAIYENVGEIQGVHKAMGAFNADLGASITLIDYHPAA
MAAIKAAGS
>Mature_328_residues
PRLFQFVAAAAISGVAFSASAPAHAGNNITLCGGSPGGLWSLLGAGIDAAVRKVDPESNVTYQTSSGGFANIVQVNQGKC
DLAIVHVGEVAIAARGEAPFREPTGGVAAVALLYNWAPMQWVTDKSFAQENGIESISDLAALEGEYNLVVNRRGILPSIL
AEKSLEASGITFEAIEGKGGSVQFQGSSTASEIMQNGRADTWVNATFVGSGSINSIASKRDLTLLSVSDDVIAAMQDAYG
STAVTIPAGAYEWLDRDIKTFGAQAALIAAEGADPEIVGLVAKAIYENVGEIQGVHKAMGAFNADLGASITLIDYHPAAM
AAIKAAGS

Specific function: Unknown

COG id: COG2358

COG function: function code R; TRAP-type uncharacterized transport system, periplasmic component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33791; Mature: 33660

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRLFQFVAAAAISGVAFSASAPAHAGNNITLCGGSPGGLWSLLGAGIDAAVRKVDPESN
CCHHHHHHHHHHHHCCEEECCCCCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHCCCCCC
VTYQTSSGGFANIVQVNQGKCDLAIVHVGEVAIAARGEAPFREPTGGVAAVALLYNWAPM
EEEEECCCCEEEEEEECCCCCCEEEEEECCEEEEECCCCCCCCCCCHHHHHHHHHCCCCC
QWVTDKSFAQENGIESISDLAALEGEYNLVVNRRGILPSILAEKSLEASGITFEAIEGKG
EEECCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCC
GSVQFQGSSTASEIMQNGRADTWVNATFVGSGSINSIASKRDLTLLSVSDDVIAAMQDAY
CEEEECCCCHHHHHHHCCCCCCEEEEEEECCCCCHHHCCCCCEEEEEECCHHHHHHHHHC
GSTAVTIPAGAYEWLDRDIKTFGAQAALIAAEGADPEIVGLVAKAIYENVGEIQGVHKAM
CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
GAFNADLGASITLIDYHPAAMAAIKAAGS
HHCCCCCCCEEEEEECCHHHHHHHHCCCC
>Mature Secondary Structure 
PRLFQFVAAAAISGVAFSASAPAHAGNNITLCGGSPGGLWSLLGAGIDAAVRKVDPESN
CHHHHHHHHHHHHCCEEECCCCCCCCCEEEEECCCCCHHHHHHHCCHHHHHHHCCCCCC
VTYQTSSGGFANIVQVNQGKCDLAIVHVGEVAIAARGEAPFREPTGGVAAVALLYNWAPM
EEEEECCCCEEEEEEECCCCCCEEEEEECCEEEEECCCCCCCCCCCHHHHHHHHHCCCCC
QWVTDKSFAQENGIESISDLAALEGEYNLVVNRRGILPSILAEKSLEASGITFEAIEGKG
EEECCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCC
GSVQFQGSSTASEIMQNGRADTWVNATFVGSGSINSIASKRDLTLLSVSDDVIAAMQDAY
CEEEECCCCHHHHHHHCCCCCCEEEEEEECCCCCHHHCCCCCEEEEEECCHHHHHHHHHC
GSTAVTIPAGAYEWLDRDIKTFGAQAALIAAEGADPEIVGLVAKAIYENVGEIQGVHKAM
CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
GAFNADLGASITLIDYHPAAMAAIKAAGS
HHCCCCCCCEEEEEECCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA