| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is 110678835
Identifier: 110678835
GI number: 110678835
Start: 1445727
End: 1446644
Strand: Reverse
Name: 110678835
Synonym: RD1_1523
Alternate gene names: NA
Gene position: 1446644-1445727 (Counterclockwise)
Preceding gene: 110678836
Following gene: 110678834
Centisome position: 35.0
GC content: 60.46
Gene sequence:
>918_bases ATGCGCGGCAGACGAAGGCTTTTGAAACAGGGCGCAGGGCTGACGGCGACTGCGATGCTTGGTCTGCACGCGACACAGGC CCATGCGCAGGTGATGGTCGGCAGCACGAGGCTTGATGTCGTCAGCGACGGTTCGTTGACCTTACCGGGCGGTTTCATCT TTGATCCAATGCCTAAAAACGAGTTGTTGCCGATACTCGCGCGCTACGGTCAATCCCCCGACACGCTGACGCCGCCCTGC AACGTGACCCTATTGCGACGGGGCGCGCGGACGGTCCTCTTCGACGTGGGGTCTGGTCCTGGGTTCTCCCCGAACACGGG GGCCATTGTGAACTCCCTTGATGCCCTCGGCGTTGCCCCGGAAGACATAACCGACGTCATCTTCACGCATGCCCATCCCG ATCACCTGTGGGGGCTCTTGGATGATTTCGACGACCCGCTGTTTGCCAATGCCAGCTACATGATCGGCAAAGCGGAATGG GAGTATTGGATGAACCCCAATACCGTGGATGACATCGGTGAGGCGCGCGCTTCCTTTGCCGTAGGTGCGAAACGGCGCCT TGAGATGATCGAAGACCAGATCAGCTTTCTCAATGACGGTGATGAGATCATCGGCGGTGTCGCCGCGCGGGCCACCTTTG GGCACACACCGGGTCACATGGCCTTTGAGGTGCGGGACGGCAGTGACGCGGTGATGATCCTCGGCGATTCCATCGGCAAC GATCATATCGCCTTTGCACGGCCGCAGTGGCATTCCGGCGCGGACCAGAACCCGGAGGCCGCCGCCGCCACACGCGTTTC GCTGATGGATCAACTGGCGCTTGAAAAGACCCGCGTGATCGGTTTTCACCTGACCGGCAACGGCGTGGGCCATGTAGAGA AAGGCACAGACGGGTATACGTTTGTGAAGGAGGGATGA
Upstream 100 bases:
>100_bases CAGCGCCGAGCATGACAGCGAAAACCCGCGATCAACGATAGTGCTTGCGTCATGCCATACAATCAATCACATTCATATAA TAGAATTGATGGGGGAAAAT
Downstream 100 bases:
>100_bases GCATGAAACACGCAAGCCTCGCACTCGCTTTGCTGTGTGGTCCGGTGATGGCCAGCGAAGACATCCCCGATCAGTACCCC GCCTCGATGCTCTATGCCAA
Product: metallo-beta-lactamase family protein
Products: NA
Alternate protein names: Beta-Lactamase Domain Protein; Metallo-Beta-Lactamase Family Protein; Metallo-Beta-Lactamase Superfamily Protein; Beta-Lactamase-Like; Twin-Arginine Translocation Pathway Signal; Zn-Dependent Hydrolase; Metallo-Beta-Lactamase; Beta-Lactamase-Like Protein; Beta-Lactamase; Metal Dependent Hydrolase; Hydrolase; Methyl Parathion Hydrolase; Beta-Lactamase Family Protein; Beta-Lactamase Superfamily Hydrolase; Metallo-Hydrolase Protein; Metallo-Beta-Lactamase Superfamily; Metal-Dependent Hydrolase; Glyoxalase II; Zn-Dependent Beta-Lactamase Domain Hydrolase; Beta-Lactamase/Hydrolase; Metallo-Beta-Lactamase Protein; Organophosphate Pesticide Hydrolase; Signal Peptide; Beta-Lactamase-Like Zn-Dependent Hydrolase Protein; Metallo-Beta-Lactamase Domain-Containing Protein; GloB Protein; Aldehyde Dehydrogenase; Signal Peptide Protein; Metall Dependent Hydrolase; Zn-Dependent Hydrolase Including Glyoxylase
Number of amino acids: Translated: 305; Mature: 305
Protein sequence:
>305_residues MRGRRRLLKQGAGLTATAMLGLHATQAHAQVMVGSTRLDVVSDGSLTLPGGFIFDPMPKNELLPILARYGQSPDTLTPPC NVTLLRRGARTVLFDVGSGPGFSPNTGAIVNSLDALGVAPEDITDVIFTHAHPDHLWGLLDDFDDPLFANASYMIGKAEW EYWMNPNTVDDIGEARASFAVGAKRRLEMIEDQISFLNDGDEIIGGVAARATFGHTPGHMAFEVRDGSDAVMILGDSIGN DHIAFARPQWHSGADQNPEAAAATRVSLMDQLALEKTRVIGFHLTGNGVGHVEKGTDGYTFVKEG
Sequences:
>Translated_305_residues MRGRRRLLKQGAGLTATAMLGLHATQAHAQVMVGSTRLDVVSDGSLTLPGGFIFDPMPKNELLPILARYGQSPDTLTPPC NVTLLRRGARTVLFDVGSGPGFSPNTGAIVNSLDALGVAPEDITDVIFTHAHPDHLWGLLDDFDDPLFANASYMIGKAEW EYWMNPNTVDDIGEARASFAVGAKRRLEMIEDQISFLNDGDEIIGGVAARATFGHTPGHMAFEVRDGSDAVMILGDSIGN DHIAFARPQWHSGADQNPEAAAATRVSLMDQLALEKTRVIGFHLTGNGVGHVEKGTDGYTFVKEG >Mature_305_residues MRGRRRLLKQGAGLTATAMLGLHATQAHAQVMVGSTRLDVVSDGSLTLPGGFIFDPMPKNELLPILARYGQSPDTLTPPC NVTLLRRGARTVLFDVGSGPGFSPNTGAIVNSLDALGVAPEDITDVIFTHAHPDHLWGLLDDFDDPLFANASYMIGKAEW EYWMNPNTVDDIGEARASFAVGAKRRLEMIEDQISFLNDGDEIIGGVAARATFGHTPGHMAFEVRDGSDAVMILGDSIGN DHIAFARPQWHSGADQNPEAAAATRVSLMDQLALEKTRVIGFHLTGNGVGHVEKGTDGYTFVKEG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32703; Mature: 32703
Theoretical pI: Translated: 5.00; Mature: 5.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRGRRRLLKQGAGLTATAMLGLHATQAHAQVMVGSTRLDVVSDGSLTLPGGFIFDPMPKN CCHHHHHHHCCCCCEEEHHHHHHHHHHHEEEEECCCEEEEEECCCEECCCCEEECCCCCH ELLPILARYGQSPDTLTPPCNVTLLRRGARTVLFDVGSGPGFSPNTGAIVNSLDALGVAP HHHHHHHHCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCHHHHHHHHCCCCC EDITDVIFTHAHPDHLWGLLDDFDDPLFANASYMIGKAEWEYWMNPNTVDDIGEARASFA HHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCEEEECCCCCHHHHHHHHHHHH VGAKRRLEMIEDQISFLNDGDEIIGGVAARATFGHTPGHMAFEVRDGSDAVMILGDSIGN HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCC DHIAFARPQWHSGADQNPEAAAATRVSLMDQLALEKTRVIGFHLTGNGVGHVEKGTDGYT CCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCEEEEEEEEECCCCCCCCCCCCCEE FVKEG EEECC >Mature Secondary Structure MRGRRRLLKQGAGLTATAMLGLHATQAHAQVMVGSTRLDVVSDGSLTLPGGFIFDPMPKN CCHHHHHHHCCCCCEEEHHHHHHHHHHHEEEEECCCEEEEEECCCEECCCCEEECCCCCH ELLPILARYGQSPDTLTPPCNVTLLRRGARTVLFDVGSGPGFSPNTGAIVNSLDALGVAP HHHHHHHHCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCHHHHHHHHCCCCC EDITDVIFTHAHPDHLWGLLDDFDDPLFANASYMIGKAEWEYWMNPNTVDDIGEARASFA HHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCEEEECCCCCHHHHHHHHHHHH VGAKRRLEMIEDQISFLNDGDEIIGGVAARATFGHTPGHMAFEVRDGSDAVMILGDSIGN HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCC DHIAFARPQWHSGADQNPEAAAATRVSLMDQLALEKTRVIGFHLTGNGVGHVEKGTDGYT CCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCEEEEEEEEECCCCCCCCCCCCCEE FVKEG EEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA