| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is 110678811
Identifier: 110678811
GI number: 110678811
Start: 1425015
End: 1425824
Strand: Direct
Name: 110678811
Synonym: RD1_1499
Alternate gene names: NA
Gene position: 1425015-1425824 (Clockwise)
Preceding gene: 110678805
Following gene: 110678812
Centisome position: 34.48
GC content: 61.23
Gene sequence:
>810_bases TTGACTCAATCAAACGCCATCGACGCGTCACATGCGCGAAATGCACGCCAGGGGACTGGTCCGCTGTTGGGTGCGCAGGA TCCCGCGCCAATTGAAGTGTGCCATGCGGAGTCCGCCGCGCCGTTGCTGCTGTTGTGTGAACATGCCGGTCAGGTCGTGC CGCAAGCCTTGGGCGGTTTGGGGTTGCCTGAGGGGGCAATAGACGGGCACATCGGCTGGGACATCGGTGCGGAAAAGCTG GCCCGTGCGCTCGCGGAACGGCTGCAGTGCCCGCTGATCCTGCAACGCTACAGCCGCCTTGTGATTGACTGCAATCGGCC GCCCGGGTCCGAAGGGTCCATTCCGACGCTCAGCGATGATGTGCCTGTGCCGGGAAACATGGGGCTGACGGCCCATGACC GTCATCTGCGCCAGCAAGAGATTTTTGATCCGATGAACGATGCGATCACTGCTGCTTTTGAAACGCACCCCCGGCATACG GTGTTTTCCATCCATTCCTACACGCGCCACTTTCAGGGCGAAGACAGGCAGTGGGATGCGGGGTTTCTGACCCGGCAGGA TGTAAAGACCGCGCAGGGTCTGATGTCGTCGATCTCAAACGCCGCGCCGGAACTGACACTGGCCCTGAACCAACCCTATC AGATTGATGACGCCAGTGATTGGTTCATCCCCCAGCACGCCGAGGCACGTCGGTTGCAACACGCGTTGATCGAGGTGCGC AACGATCATTTGCGCGATGCTGACGGTGTGGCGCGCTGGGCCGGTCTGTTGGCCCCTGCGATCCGGTCCATTCTGGAGGA TACCCCATGA
Upstream 100 bases:
>100_bases GTTAGGTATAGCGTGAGTGAAAAAATAATTTCAGTCAATTCAATTCTCTTGACTTTGGAAGTTTTCATTCGTCTACTTTC TGCAACTTGTGGGGAACGCC
Downstream 100 bases:
>100_bases CCCTGACCCGAAATGTGCCCCTGGTTCCAGAGCAATCCGCGCTGTTGTTCATTGACGTGCAGAACTTTGCCGCGCACCGC GAAGGCGGTGAATTCAAAGA
Product: hypothetical protein
Products: NA
Alternate protein names: N-Formylglutamate Amidohydrolase Family Protein; N-Formylglutamate Amidohydrolase Protein; N-Formylglutamate Amidohydrolase Superfamily; Cytoplasmic Protein; Hydrolase
Number of amino acids: Translated: 269; Mature: 268
Protein sequence:
>269_residues MTQSNAIDASHARNARQGTGPLLGAQDPAPIEVCHAESAAPLLLLCEHAGQVVPQALGGLGLPEGAIDGHIGWDIGAEKL ARALAERLQCPLILQRYSRLVIDCNRPPGSEGSIPTLSDDVPVPGNMGLTAHDRHLRQQEIFDPMNDAITAAFETHPRHT VFSIHSYTRHFQGEDRQWDAGFLTRQDVKTAQGLMSSISNAAPELTLALNQPYQIDDASDWFIPQHAEARRLQHALIEVR NDHLRDADGVARWAGLLAPAIRSILEDTP
Sequences:
>Translated_269_residues MTQSNAIDASHARNARQGTGPLLGAQDPAPIEVCHAESAAPLLLLCEHAGQVVPQALGGLGLPEGAIDGHIGWDIGAEKL ARALAERLQCPLILQRYSRLVIDCNRPPGSEGSIPTLSDDVPVPGNMGLTAHDRHLRQQEIFDPMNDAITAAFETHPRHT VFSIHSYTRHFQGEDRQWDAGFLTRQDVKTAQGLMSSISNAAPELTLALNQPYQIDDASDWFIPQHAEARRLQHALIEVR NDHLRDADGVARWAGLLAPAIRSILEDTP >Mature_268_residues TQSNAIDASHARNARQGTGPLLGAQDPAPIEVCHAESAAPLLLLCEHAGQVVPQALGGLGLPEGAIDGHIGWDIGAEKLA RALAERLQCPLILQRYSRLVIDCNRPPGSEGSIPTLSDDVPVPGNMGLTAHDRHLRQQEIFDPMNDAITAAFETHPRHTV FSIHSYTRHFQGEDRQWDAGFLTRQDVKTAQGLMSSISNAAPELTLALNQPYQIDDASDWFIPQHAEARRLQHALIEVRN DHLRDADGVARWAGLLAPAIRSILEDTP
Specific function: Unknown
COG id: COG3931
COG function: function code E; Predicted N-formylglutamate amidohydrolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29312; Mature: 29181
Theoretical pI: Translated: 5.47; Mature: 5.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQSNAIDASHARNARQGTGPLLGAQDPAPIEVCHAESAAPLLLLCEHAGQVVPQALGGL CCCCCCCCHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCC GLPEGAIDGHIGWDIGAEKLARALAERLQCPLILQRYSRLVIDCNRPPGSEGSIPTLSDD CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHEEEECCCCCCCCCCCCCCCCC VPVPGNMGLTAHDRHLRQQEIFDPMNDAITAAFETHPRHTVFSIHSYTRHFQGEDRQWDA CCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHCCCCCEEEEHHHHHHHHCCCCCCCCC GFLTRQDVKTAQGLMSSISNAAPELTLALNQPYQIDDASDWFIPQHAEARRLQHALIEVR CCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCEECCCCCCCCCCCHHHHHHHHHHHHHHH NDHLRDADGVARWAGLLAPAIRSILEDTP HHHCCCHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TQSNAIDASHARNARQGTGPLLGAQDPAPIEVCHAESAAPLLLLCEHAGQVVPQALGGL CCCCCCCHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCC GLPEGAIDGHIGWDIGAEKLARALAERLQCPLILQRYSRLVIDCNRPPGSEGSIPTLSDD CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHEEEECCCCCCCCCCCCCCCCC VPVPGNMGLTAHDRHLRQQEIFDPMNDAITAAFETHPRHTVFSIHSYTRHFQGEDRQWDA CCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHCCCCCEEEEHHHHHHHHCCCCCCCCC GFLTRQDVKTAQGLMSSISNAAPELTLALNQPYQIDDASDWFIPQHAEARRLQHALIEVR CCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCEECCCCCCCCCCCHHHHHHHHHHHHHHH NDHLRDADGVARWAGLLAPAIRSILEDTP HHHCCCHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA