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The map label for this gene is rarA [H]

Identifier: 110678756

GI number: 110678756

Start: 1368216

End: 1369541

Strand: Direct

Name: rarA [H]

Synonym: RD1_1439

Alternate gene names: 110678756

Gene position: 1368216-1369541 (Clockwise)

Preceding gene: 110678755

Following gene: 110678757

Centisome position: 33.1

GC content: 60.48

Gene sequence:

>1326_bases
ATGGACCTGTTTGGCCAGTCGGGCGGAAACGACAAGACGCCACAGCATGCAAAGACGCGTCCGCTGGCGGATTTGCTCAG
GCCGCAGTCTCTTGACGAGGTGATAGGTCAGGAAAAACTGCTGGCTGAGGACGGCCCACTGGGGTCCATGCTGGCGGCGG
AACGTTTGACGTCTTTGATCCTTTGGGGGCCGCCCGGCGTTGGGAAGACGACGATTGCCCGACTTCTGGCGCATCGGACC
GATCTGCATTTCGAACAGATCAGCGCGATTTTCAGCGGCGTGTCCGATCTCAAGAAGGTCTTCCAGGCTGCCCGTGATCG
TGCATCGCTCGGGCAGGGCACTTTCCTTTTCATTGATGAGATTCATCGGTTCAACAAGGCACAGTTGGATTCGCTGCTGC
CGGTGATGGAGGACGGCACCGTTACTGTGTGCGGTGCGACCACCGAAAACCCCTCATTCAGCGTGAATGGTTCTGTGCTC
AGCCGCTGTCAGGTGATGGTGCTGGAGCGCCTTGATGCCACGGCGCTGGCAAGGTTGCTGGCACGCGCAGAGGCGCAGAC
CGGACAGGCGCTGCCGCTGACGGATGATGCCAAATCGCTGTTATGCGCCATGGCCGATGGGGACGGGCGTGCCCTGCTCA
ATCTGGTTGAAAGTGTGCGTGCATGGCCACAGGATCAGACCTATTCGGCAGAGGATATCGCCGGTCGGCTGACCCGGCGC
GCCGCATTGCATGACCGCGCCGGAGACGGTCATTACGCGATCGCCAGTGCCATCCAGAAATCAATTCGCGGATCTGATCC
GGAGGCGGCGATCTACTGGGTGCACAGGGCGCTTGAAGGGGGGGAAGACCCGCGTTTCATTCTGCGGCGCCTGACGATGA
TCGCCTGGGAGGACGTGGGGCTGGCGGACCCAGAAGCCTCGCGCGTTTGCCTGAGCGCGTGGGATACCTACGAAAGGCTC
GGCAGCCCGGAGGGGGATCTGGCCTTGTCGCAGGCGGCGATTTATCTGGCGCTCGCGCCGAAATCGAATGCCGGATATGT
GGCGCATAAAGCGTCGCGTGCGGATGCGAAAAAGTCCGGCTCCCTGCCGCCACCGATGCATATCCTGAACGGGCCGACAA
AGATGATGCAGGACCTCGGTTTCAGGAAGGGCTATCAATATGACCATGATGCACCGGAAGGCTTCTCGGGTCAGAATTAC
TTTCCCGACGGTCTGAAAAGGCCGCAGCACTACGCGCCCGTTGAACGTGGCTTTGAGCGGGAACTTGCAAAGCGCGTGCG
CTACTTTGACAAGTTGCGTCAGGAGCGGGACGACAATGCAACGTGA

Upstream 100 bases:

>100_bases
CGGGGGTGTCGCCATGTAAAATCGCGTGTGGTTTGCAGCGCTGCGCGGACTCGCACCAAGGTGCGTTTTTCGGTAATACG
GCGCAAAAATGGAGTAGGCT

Downstream 100 bases:

>100_bases
TCCGCAGGCCCTTGCGGCGCGGGCGGAAAACTTGACAACGGGTGCTGGACGCGGGACAGACCGCGCATGATGAAGTCTTT
GATCCTTGTGGCCGCCGGGG

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 441; Mature: 441

Protein sequence:

>441_residues
MDLFGQSGGNDKTPQHAKTRPLADLLRPQSLDEVIGQEKLLAEDGPLGSMLAAERLTSLILWGPPGVGKTTIARLLAHRT
DLHFEQISAIFSGVSDLKKVFQAARDRASLGQGTFLFIDEIHRFNKAQLDSLLPVMEDGTVTVCGATTENPSFSVNGSVL
SRCQVMVLERLDATALARLLARAEAQTGQALPLTDDAKSLLCAMADGDGRALLNLVESVRAWPQDQTYSAEDIAGRLTRR
AALHDRAGDGHYAIASAIQKSIRGSDPEAAIYWVHRALEGGEDPRFILRRLTMIAWEDVGLADPEASRVCLSAWDTYERL
GSPEGDLALSQAAIYLALAPKSNAGYVAHKASRADAKKSGSLPPPMHILNGPTKMMQDLGFRKGYQYDHDAPEGFSGQNY
FPDGLKRPQHYAPVERGFERELAKRVRYFDKLRQERDDNAT

Sequences:

>Translated_441_residues
MDLFGQSGGNDKTPQHAKTRPLADLLRPQSLDEVIGQEKLLAEDGPLGSMLAAERLTSLILWGPPGVGKTTIARLLAHRT
DLHFEQISAIFSGVSDLKKVFQAARDRASLGQGTFLFIDEIHRFNKAQLDSLLPVMEDGTVTVCGATTENPSFSVNGSVL
SRCQVMVLERLDATALARLLARAEAQTGQALPLTDDAKSLLCAMADGDGRALLNLVESVRAWPQDQTYSAEDIAGRLTRR
AALHDRAGDGHYAIASAIQKSIRGSDPEAAIYWVHRALEGGEDPRFILRRLTMIAWEDVGLADPEASRVCLSAWDTYERL
GSPEGDLALSQAAIYLALAPKSNAGYVAHKASRADAKKSGSLPPPMHILNGPTKMMQDLGFRKGYQYDHDAPEGFSGQNY
FPDGLKRPQHYAPVERGFERELAKRVRYFDKLRQERDDNAT
>Mature_441_residues
MDLFGQSGGNDKTPQHAKTRPLADLLRPQSLDEVIGQEKLLAEDGPLGSMLAAERLTSLILWGPPGVGKTTIARLLAHRT
DLHFEQISAIFSGVSDLKKVFQAARDRASLGQGTFLFIDEIHRFNKAQLDSLLPVMEDGTVTVCGATTENPSFSVNGSVL
SRCQVMVLERLDATALARLLARAEAQTGQALPLTDDAKSLLCAMADGDGRALLNLVESVRAWPQDQTYSAEDIAGRLTRR
AALHDRAGDGHYAIASAIQKSIRGSDPEAAIYWVHRALEGGEDPRFILRRLTMIAWEDVGLADPEASRVCLSAWDTYERL
GSPEGDLALSQAAIYLALAPKSNAGYVAHKASRADAKKSGSLPPPMHILNGPTKMMQDLGFRKGYQYDHDAPEGFSGQNY
FPDGLKRPQHYAPVERGFERELAKRVRYFDKLRQERDDNAT

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=437, Percent_Identity=40.045766590389, Blast_Score=303, Evalue=3e-82,
Organism=Homo sapiens, GI18426904, Length=437, Percent_Identity=36.3844393592677, Blast_Score=255, Evalue=6e-68,
Organism=Escherichia coli, GI1787119, Length=432, Percent_Identity=40.5092592592593, Blast_Score=334, Evalue=7e-93,
Organism=Saccharomyces cerevisiae, GI6324111, Length=419, Percent_Identity=37.708830548926, Blast_Score=276, Evalue=4e-75,
Organism=Saccharomyces cerevisiae, GI6324039, Length=210, Percent_Identity=25.7142857142857, Blast_Score=63, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 48290; Mature: 48290

Theoretical pI: Translated: 6.45; Mature: 6.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLFGQSGGNDKTPQHAKTRPLADLLRPQSLDEVIGQEKLLAEDGPLGSMLAAERLTSLI
CCCCCCCCCCCCCCCCHHCCCHHHHHCCCHHHHHHCHHHHHHCCCCCHHHHHHHHHHHEE
LWGPPGVGKTTIARLLAHRTDLHFEQISAIFSGVSDLKKVFQAARDRASLGQGTFLFIDE
EECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHH
IHRFNKAQLDSLLPVMEDGTVTVCGATTENPSFSVNGSVLSRCQVMVLERLDATALARLL
HHHHCHHHHHHHHHHHCCCCEEEEECCCCCCCEEECHHHHHHHHHHHHHHCCHHHHHHHH
ARAEAQTGQALPLTDDAKSLLCAMADGDGRALLNLVESVRAWPQDQTYSAEDIAGRLTRR
HHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
AALHDRAGDGHYAIASAIQKSIRGSDPEAAIYWVHRALEGGEDPRFILRRLTMIAWEDVG
HHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
LADPEASRVCLSAWDTYERLGSPEGDLALSQAAIYLALAPKSNAGYVAHKASRADAKKSG
CCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCEEEEEEECCCCCCCCEEECCHHHHHHHCC
SLPPPMHILNGPTKMMQDLGFRKGYQYDHDAPEGFSGQNYFPDGLKRPQHYAPVERGFER
CCCCCHHHHCCHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHH
ELAKRVRYFDKLRQERDDNAT
HHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDLFGQSGGNDKTPQHAKTRPLADLLRPQSLDEVIGQEKLLAEDGPLGSMLAAERLTSLI
CCCCCCCCCCCCCCCCHHCCCHHHHHCCCHHHHHHCHHHHHHCCCCCHHHHHHHHHHHEE
LWGPPGVGKTTIARLLAHRTDLHFEQISAIFSGVSDLKKVFQAARDRASLGQGTFLFIDE
EECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHH
IHRFNKAQLDSLLPVMEDGTVTVCGATTENPSFSVNGSVLSRCQVMVLERLDATALARLL
HHHHCHHHHHHHHHHHCCCCEEEEECCCCCCCEEECHHHHHHHHHHHHHHCCHHHHHHHH
ARAEAQTGQALPLTDDAKSLLCAMADGDGRALLNLVESVRAWPQDQTYSAEDIAGRLTRR
HHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
AALHDRAGDGHYAIASAIQKSIRGSDPEAAIYWVHRALEGGEDPRFILRRLTMIAWEDVG
HHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
LADPEASRVCLSAWDTYERLGSPEGDLALSQAAIYLALAPKSNAGYVAHKASRADAKKSG
CCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCEEEEEEECCCCCCCCEEECCHHHHHHHCC
SLPPPMHILNGPTKMMQDLGFRKGYQYDHDAPEGFSGQNYFPDGLKRPQHYAPVERGFER
CCCCCHHHHCCHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHH
ELAKRVRYFDKLRQERDDNAT
HHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]