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The map label for this gene is ybbO [H]

Identifier: 110678710

GI number: 110678710

Start: 1333450

End: 1334277

Strand: Reverse

Name: ybbO [H]

Synonym: RD1_1391

Alternate gene names: 110678710

Gene position: 1334277-1333450 (Counterclockwise)

Preceding gene: 110678711

Following gene: 110678709

Centisome position: 32.28

GC content: 61.47

Gene sequence:

>828_bases
GTGCAAAAATCGATTCTGATCACAGGATGTTCGTCCGGCATCGGCTACTGCGCGGCGCAGGGGCTCAAAACCGCCGGCTG
GCGCGTTTTCGCATCGTGCCGCAAGCAGGAAGACTGCGACCGGTTGCGCGCTGAAGGGTTTGAGAGCCCGCTGATCGACT
ACACCCAACCCGACACCATCCGACAAGGGCTGGACGAGGTTCTGGCGGCGACGGGTGGGACGTTGCACGCGCTGTTCAAC
AACGGCGCGCATGGCACGCCGGGCGCGGTCGAGGACCTGCCCACGGACGCATTGCGCGCCATATTCGAGGCGAATTTCTT
TGGCTGGCACGAACTGACGCGCGCCGTGATCCCGGTCATGCGCGCGCAGGGACATGGGCGGATCATCCAATGCTCATCTG
TCCTTGGCTTCGTGACGCTGCCGTGGCGCGGCGCATACAACGCGACGAAATTCGCACTTGAGGGCCTGACCGATACGCTG
CGGATCGAAATGCGGGATACGGATATTCATGTGGTGCTGATTGAACCGGGGCCTGTCACCTCGAAAATCCGGCAGAATTC
GATCCCGCATTTCGAACGCTGGATCAAATGGGAAACCTCGCTGCGGCGTGCGCAATACGAAAACACGCTGAACAAACGCC
TCTATCACAGCGGCGGCCCCGACCCCTTTGAACTGCCCCCCAAAGCGGTGCTCAAGAAACTGCGCCATGCGTTGGAGGCG
CAGACCCCCAGACCGCGATACTATGTAACGACGCCCACCTATCTGATGGGCGCCTTGCGGCGCATTCTGCCAACCCGCGC
CCTCGACCGCGTTTTGGCGCGCATTTAA

Upstream 100 bases:

>100_bases
GACCCACGGGGTGGGTTGCGGAATTCCTGCTTACGGGCGGTTAGAATTGCATCTGGCAATCTATCTTGGCACATGGTGAC
CTGAAACGAAGGGAGCCCGC

Downstream 100 bases:

>100_bases
TTTCGCTGACGCCTGAAATAGGCGTTCGCTTTTGTCAACGACGCCTCTACATCGTGCGGGGAAACAAAAAGGACTAAATA
TAATGGGAGATCCGTTTTTC

Product: oxidoreductase, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MQKSILITGCSSGIGYCAAQGLKTAGWRVFASCRKQEDCDRLRAEGFESPLIDYTQPDTIRQGLDEVLAATGGTLHALFN
NGAHGTPGAVEDLPTDALRAIFEANFFGWHELTRAVIPVMRAQGHGRIIQCSSVLGFVTLPWRGAYNATKFALEGLTDTL
RIEMRDTDIHVVLIEPGPVTSKIRQNSIPHFERWIKWETSLRRAQYENTLNKRLYHSGGPDPFELPPKAVLKKLRHALEA
QTPRPRYYVTTPTYLMGALRRILPTRALDRVLARI

Sequences:

>Translated_275_residues
MQKSILITGCSSGIGYCAAQGLKTAGWRVFASCRKQEDCDRLRAEGFESPLIDYTQPDTIRQGLDEVLAATGGTLHALFN
NGAHGTPGAVEDLPTDALRAIFEANFFGWHELTRAVIPVMRAQGHGRIIQCSSVLGFVTLPWRGAYNATKFALEGLTDTL
RIEMRDTDIHVVLIEPGPVTSKIRQNSIPHFERWIKWETSLRRAQYENTLNKRLYHSGGPDPFELPPKAVLKKLRHALEA
QTPRPRYYVTTPTYLMGALRRILPTRALDRVLARI
>Mature_275_residues
MQKSILITGCSSGIGYCAAQGLKTAGWRVFASCRKQEDCDRLRAEGFESPLIDYTQPDTIRQGLDEVLAATGGTLHALFN
NGAHGTPGAVEDLPTDALRAIFEANFFGWHELTRAVIPVMRAQGHGRIIQCSSVLGFVTLPWRGAYNATKFALEGLTDTL
RIEMRDTDIHVVLIEPGPVTSKIRQNSIPHFERWIKWETSLRRAQYENTLNKRLYHSGGPDPFELPPKAVLKKLRHALEA
QTPRPRYYVTTPTYLMGALRRILPTRALDRVLARI

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7657478, Length=186, Percent_Identity=33.3333333333333, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI40548397, Length=262, Percent_Identity=30.5343511450382, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI214010158, Length=262, Percent_Identity=30.5343511450382, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI214010156, Length=262, Percent_Identity=30.5343511450382, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI22758144, Length=262, Percent_Identity=30.5343511450382, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI44680136, Length=271, Percent_Identity=28.0442804428044, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI44680133, Length=271, Percent_Identity=28.0442804428044, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI17738292, Length=271, Percent_Identity=28.0442804428044, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI22507405, Length=284, Percent_Identity=27.4647887323944, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI223718074, Length=261, Percent_Identity=29.8850574712644, Blast_Score=95, Evalue=6e-20,
Organism=Homo sapiens, GI150247226, Length=285, Percent_Identity=28.4210526315789, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI119392083, Length=283, Percent_Identity=30.0353356890459, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI19743808, Length=282, Percent_Identity=27.6595744680851, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI20149619, Length=196, Percent_Identity=30.1020408163265, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI7706318, Length=198, Percent_Identity=31.3131313131313, Blast_Score=84, Evalue=9e-17,
Organism=Homo sapiens, GI50726952, Length=280, Percent_Identity=28.2142857142857, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI4504503, Length=293, Percent_Identity=26.2798634812287, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI32483357, Length=229, Percent_Identity=28.3842794759825, Blast_Score=73, Evalue=3e-13,
Organism=Escherichia coli, GI1786701, Length=272, Percent_Identity=40.0735294117647, Blast_Score=211, Evalue=4e-56,
Organism=Escherichia coli, GI1787820, Length=189, Percent_Identity=31.7460317460317, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787335, Length=185, Percent_Identity=28.1081081081081, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193210355, Length=288, Percent_Identity=26.0416666666667, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17507613, Length=295, Percent_Identity=25.0847457627119, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI32563809, Length=295, Percent_Identity=25.0847457627119, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI115534660, Length=285, Percent_Identity=24.9122807017544, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI71997402, Length=183, Percent_Identity=27.8688524590164, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17557780, Length=289, Percent_Identity=24.5674740484429, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17570069, Length=183, Percent_Identity=27.8688524590164, Blast_Score=73, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6323882, Length=193, Percent_Identity=29.0155440414508, Blast_Score=79, Evalue=9e-16,
Organism=Drosophila melanogaster, GI21358495, Length=196, Percent_Identity=29.5918367346939, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24651139, Length=269, Percent_Identity=28.996282527881, Blast_Score=86, Evalue=4e-17,
Organism=Drosophila melanogaster, GI28571526, Length=202, Percent_Identity=27.2277227722772, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24580925, Length=198, Percent_Identity=27.7777777777778, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21355319, Length=190, Percent_Identity=27.3684210526316, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI21356301, Length=185, Percent_Identity=25.9459459459459, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24643142, Length=186, Percent_Identity=30.1075268817204, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 30808; Mature: 30808

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKSILITGCSSGIGYCAAQGLKTAGWRVFASCRKQEDCDRLRAEGFESPLIDYTQPDTI
CCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCHHH
RQGLDEVLAATGGTLHALFNNGAHGTPGAVEDLPTDALRAIFEANFFGWHELTRAVIPVM
HHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHH
RAQGHGRIIQCSSVLGFVTLPWRGAYNATKFALEGLTDTLRIEMRDTDIHVVLIEPGPVT
HCCCCCCEEEECCCCEEEECCCCCCCCHHHHHHHCCCEEEEEEEECCCEEEEEECCCCCH
SKIRQNSIPHFERWIKWETSLRRAQYENTLNKRLYHSGGPDPFELPPKAVLKKLRHALEA
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHC
QTPRPRYYVTTPTYLMGALRRILPTRALDRVLARI
CCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQKSILITGCSSGIGYCAAQGLKTAGWRVFASCRKQEDCDRLRAEGFESPLIDYTQPDTI
CCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCHHH
RQGLDEVLAATGGTLHALFNNGAHGTPGAVEDLPTDALRAIFEANFFGWHELTRAVIPVM
HHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHH
RAQGHGRIIQCSSVLGFVTLPWRGAYNATKFALEGLTDTLRIEMRDTDIHVVLIEPGPVT
HCCCCCCEEEECCCCEEEECCCCCCCCHHHHHHHCCCEEEEEEEECCCEEEEEECCCCCH
SKIRQNSIPHFERWIKWETSLRRAQYENTLNKRLYHSGGPDPFELPPKAVLKKLRHALEA
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHC
QTPRPRYYVTTPTYLMGALRRILPTRALDRVLARI
CCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]