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The map label for this gene is rpoZ

Identifier: 110678679

GI number: 110678679

Start: 1307369

End: 1307722

Strand: Direct

Name: rpoZ

Synonym: RD1_1358

Alternate gene names: 110678679

Gene position: 1307369-1307722 (Clockwise)

Preceding gene: 110678678

Following gene: 110678680

Centisome position: 31.63

GC content: 58.19

Gene sequence:

>354_bases
ATGGCCCGCGTCACAGTCGAAGATTGCGTTGATAAAGTTCCAAATCGGTTCGAGCTTGTGATGCTCGCAGCACATCGTGC
GCGCGAAATTTCGGCCGGTTCTGCGCCAACGGTCAACCGGGACAACGACAAGAACCCCGCCGTTTCGCTGCGCGAGATTG
CCGAAGAAACCCAGAGCGCCGATGACCTGCGTGAGCGTCTGATCGAGAGCAACCAGCACCAGATCGAGGTTGATGAACCC
GAAGAGGACGCAATGGCCTTGCTGATGGGTGCCGAACAGGACAAGCCTGAAGAAGACAGCATGTCCGAAGAGATGTTGCT
GCGCCAGTTGATGGCGGCCCAAGGGCAGGGCTGA

Upstream 100 bases:

>100_bases
AAAAACGAAGTCGAACCGCTGTAATTCTTTGCTTGTAAAGCGGTGCCAACCGACCTAAATAACGGACTTCCGCCCCTACT
CTGTCTGATGGAGATGTTTC

Downstream 100 bases:

>100_bases
ACGCAGCCCGCCTGATCTGGTGTGAGAGGCGGTTGACATGAAAGACGGCGATCATTTGGAAATATCCGCCGATGACCTCG
TGTCGCTCGTTCTGCGCTAC

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 117; Mature: 116

Protein sequence:

>117_residues
MARVTVEDCVDKVPNRFELVMLAAHRAREISAGSAPTVNRDNDKNPAVSLREIAEETQSADDLRERLIESNQHQIEVDEP
EEDAMALLMGAEQDKPEEDSMSEEMLLRQLMAAQGQG

Sequences:

>Translated_117_residues
MARVTVEDCVDKVPNRFELVMLAAHRAREISAGSAPTVNRDNDKNPAVSLREIAEETQSADDLRERLIESNQHQIEVDEP
EEDAMALLMGAEQDKPEEDSMSEEMLLRQLMAAQGQG
>Mature_116_residues
ARVTVEDCVDKVPNRFELVMLAAHRAREISAGSAPTVNRDNDKNPAVSLREIAEETQSADDLRERLIESNQHQIEVDEPE
EDAMALLMGAEQDKPEEDSMSEEMLLRQLMAAQGQG

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

Organism=Escherichia coli, GI1790081, Length=56, Percent_Identity=53.5714285714286, Blast_Score=61, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_ROSDO (Q16AJ3)

Other databases:

- EMBL:   CP000362
- RefSeq:   YP_681686.1
- STRING:   Q16AJ3
- GeneID:   4197332
- GenomeReviews:   CP000362_GR
- KEGG:   rde:RD1_1358
- NMPDR:   fig|375451.6.peg.1272
- eggNOG:   COG1758
- HOGENOM:   HBG742204
- OMA:   PEEDSMA
- PhylomeDB:   Q16AJ3
- ProtClustDB:   PRK00392
- BioCyc:   RDEN375451:RD1_1358-MONOMER
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 13064; Mature: 12932

Theoretical pI: Translated: 4.07; Mature: 4.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
6.0 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVTVEDCVDKVPNRFELVMLAAHRAREISAGSAPTVNRDNDKNPAVSLREIAEETQSA
CCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCH
DDLRERLIESNQHQIEVDEPEEDAMALLMGAEQDKPEEDSMSEEMLLRQLMAAQGQG
HHHHHHHHHCCCCEEECCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ARVTVEDCVDKVPNRFELVMLAAHRAREISAGSAPTVNRDNDKNPAVSLREIAEETQSA
CCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCH
DDLRERLIESNQHQIEVDEPEEDAMALLMGAEQDKPEEDSMSEEMLLRQLMAAQGQG
HHHHHHHHHCCCCEEECCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA