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The map label for this gene is atpF

Identifier: 110678647

GI number: 110678647

Start: 1275201

End: 1275767

Strand: Direct

Name: atpF

Synonym: RD1_1325

Alternate gene names: 110678647

Gene position: 1275201-1275767 (Clockwise)

Preceding gene: 110678646

Following gene: 110678649

Centisome position: 30.85

GC content: 61.02

Gene sequence:

>567_bases
ATGCGGAACTTGTCACGTCTTTCAGTGCTTGCCCTTGCCATGTTGGCAGCCAACCCTGCCTTTGCGGCGGGGGGCGGAAT
ATCCCTAAAGAACACCGATTTCGTGGTCTTGCTCGGCCTTCTCGTTTTCATCGGCATTCTGGTCTATTTCAAGGTGCCGG
GCATGATCGGCAAGATGCTCGATTCGCGTGCCGAGGGTATCGAAGCTGAACTGAACGAAGCCCGCGCCCTGCGCGAGGAA
GCACAGAGCCTGCTGGCCAGTTATGAGCGCAAGCAGCGCGAAGTGCAGGAGCAGGCGGACCGTATCGTCGAAGCGGCGAA
GGAAGAAGCGACCATTGCTGCCGAACAGGCGCGCGCCGATCTTGAGGTGTCGCTGGCCCGGCGGATGGCGGCGGCAGAAG
ACCAGATTGCAAGTGCTCAGGCGGCTGCGATCAAGGAAGTGCGCGACCAGTCGGTCAGCATTGCCATCGCGGCGGCGCAG
GACGTGATCGCCAAGCAGTTGACCGCGGCAGATGCCAACGCGTTGATTGACGGCGCGATCACCGAAGTCGAAGCGAAGCT
GCACTGA

Upstream 100 bases:

>100_bases
CCAAGGACACGGCACAGGAAATCGTTGCCACATTCGGCGGCAAGGCAGATGCCAAGGCCGTGGATGCAGCGGTCGACGGC
CAGTTGAAAGGATGAAGCAG

Downstream 100 bases:

>100_bases
TCACTGATCGCGAGACACAGCAAGACGCCCGGTCCCAGACCGGGCTTTTTGCGTTATGGCGTGGGACGAGAGGCAAACAC
CCAATGTCACCTCGCGCGTT

Product: F0F1 ATP synthase subunit B

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F(0) sector subunit b; ATPase subunit I; F-type ATPase subunit b; F-ATPase subunit b

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MRNLSRLSVLALAMLAANPAFAAGGGISLKNTDFVVLLGLLVFIGILVYFKVPGMIGKMLDSRAEGIEAELNEARALREE
AQSLLASYERKQREVQEQADRIVEAAKEEATIAAEQARADLEVSLARRMAAAEDQIASAQAAAIKEVRDQSVSIAIAAAQ
DVIAKQLTAADANALIDGAITEVEAKLH

Sequences:

>Translated_188_residues
MRNLSRLSVLALAMLAANPAFAAGGGISLKNTDFVVLLGLLVFIGILVYFKVPGMIGKMLDSRAEGIEAELNEARALREE
AQSLLASYERKQREVQEQADRIVEAAKEEATIAAEQARADLEVSLARRMAAAEDQIASAQAAAIKEVRDQSVSIAIAAAQ
DVIAKQLTAADANALIDGAITEVEAKLH
>Mature_188_residues
MRNLSRLSVLALAMLAANPAFAAGGGISLKNTDFVVLLGLLVFIGILVYFKVPGMIGKMLDSRAEGIEAELNEARALREE
AQSLLASYERKQREVQEQADRIVEAAKEEATIAAEQARADLEVSLARRMAAAEDQIASAQAAAIKEVRDQSVSIAIAAAQ
DVIAKQLTAADANALIDGAITEVEAKLH

Specific function: Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)

COG id: COG0711

COG function: function code C; F0F1-type ATP synthase, subunit b

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase B chain family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPF_ROSDO (Q16AM5)

Other databases:

- EMBL:   CP000362
- RefSeq:   YP_681654.1
- STRING:   Q16AM5
- GeneID:   4197378
- GenomeReviews:   CP000362_GR
- KEGG:   rde:RD1_1325
- NMPDR:   fig|375451.6.peg.1240
- eggNOG:   COG0711
- HOGENOM:   HBG692690
- OMA:   AKEEATI
- ProtClustDB:   PRK13455
- BioCyc:   RDEN375451:RD1_1325-MONOMER
- HAMAP:   MF_01398
- InterPro:   IPR002146

Pfam domain/function: PF00430 ATP-synt_B

EC number: 3.6.3.14

Molecular weight: Translated: 19984; Mature: 19984

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1d81a890)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNLSRLSVLALAMLAANPAFAAGGGISLKNTDFVVLLGLLVFIGILVYFKVPGMIGKML
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DSRAEGIEAELNEARALREEAQSLLASYERKQREVQEQADRIVEAAKEEATIAAEQARAD
HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LEVSLARRMAAAEDQIASAQAAAIKEVRDQSVSIAIAAAQDVIAKQLTAADANALIDGAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TEVEAKLH
HHHHHHCH
>Mature Secondary Structure
MRNLSRLSVLALAMLAANPAFAAGGGISLKNTDFVVLLGLLVFIGILVYFKVPGMIGKML
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DSRAEGIEAELNEARALREEAQSLLASYERKQREVQEQADRIVEAAKEEATIAAEQARAD
HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LEVSLARRMAAAEDQIASAQAAAIKEVRDQSVSIAIAAAQDVIAKQLTAADANALIDGAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TEVEAKLH
HHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA