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The map label for this gene is yafC [H]

Identifier: 110678640

GI number: 110678640

Start: 1270780

End: 1271658

Strand: Direct

Name: yafC [H]

Synonym: RD1_1317

Alternate gene names: 110678640

Gene position: 1270780-1271658 (Clockwise)

Preceding gene: 110678626

Following gene: 110678641

Centisome position: 30.75

GC content: 62.23

Gene sequence:

>879_bases
ATGAACAGCTGGGACGAGGTCAGGACAGCGTTTCAAGTCGCTCGCATGGGGACCGTCAGCGGCGCGGCCGAGGTGCTGGG
CGTGCATCATGCGACGGTGATCCGGCATGTGGATGCGCTCGAAGCACGTCTGGGCGTCAAACTGTTTCAGCGCCATGCGC
GCGGCTATACCGCCACCGAAGCCGGGCAGGACCTGTTGCGCGTTGCGCAGGCGACGGATGACCAGTTTCATCAGCTTGCC
GGGCGCATCAAGGGGCGTGGCAATGAGGTGTCGGGTGATCTTGTGGTCACGTCGCTGATTGATCTGTCCTCGCGGATGGT
GCCTGTGCTGGTGGCGTTTCAGAAAGCCTATCCGGATGTGGTCGTGCGCTACCTCACAGGCGAGCGTCTGTTCCGGCTGG
AATACGGCGAGGCGCATGTGGCGATCCGGGCGGGCACCGTGCCGGACCAGCCCGATAATGTCGTGCAGGAGTTTCGTCAT
CACCGGGTCGCCCTATTTGCGACGACCGATTACATCGCCGAACATGGCCGCCCGAATGGAGTCAAGAGTTTTGGCGATCA
CCGCTTTGTGGCGCATGATGCGGACAACAGCCGCGCGCCGTTTGAGCGGTGGTTGCGCCAGAACGTGCCCGCTTCCAGCA
TCAAGTTTCGCAGTTCGGACACGCGCGCCCAGCGGGAAGCAATTCTGGACGGGGCCGGGATCGGGTTTCTGCCCGCCTTT
GAGGCGCAGAATCACCCGGAACTGGTGGAGGTGCACCCTGAACAGGAAGGGTGGAGCGGCCCGCTGTGGCTGGTCACCCA
TGTGGATCTGCATCGTACGACGAAGGTGCAGACCTTCCTGAATTTTGTGAAGGAAGCCGCGAAAGACTGGGTGGAGTGA

Upstream 100 bases:

>100_bases
TGTCGTTTTTGCGACCGTGCGTGGTGGAGTTACGCCTTGTCTTGCGCGGCGAAATTGTGAAACCTGCCGTTTCGCGCGCA
GAAACCGGATGAGGTGAAGG

Downstream 100 bases:

>100_bases
CAGCGGCACACAAGGGCCATGCTGCCATGCTGCTGTTTTCGGCGCTCGTTGCGGGGTCTTTCTCACTCGGCGGGCAGATC
GCCAACGAGGTGGCCCCGGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MNSWDEVRTAFQVARMGTVSGAAEVLGVHHATVIRHVDALEARLGVKLFQRHARGYTATEAGQDLLRVAQATDDQFHQLA
GRIKGRGNEVSGDLVVTSLIDLSSRMVPVLVAFQKAYPDVVVRYLTGERLFRLEYGEAHVAIRAGTVPDQPDNVVQEFRH
HRVALFATTDYIAEHGRPNGVKSFGDHRFVAHDADNSRAPFERWLRQNVPASSIKFRSSDTRAQREAILDGAGIGFLPAF
EAQNHPELVEVHPEQEGWSGPLWLVTHVDLHRTTKVQTFLNFVKEAAKDWVE

Sequences:

>Translated_292_residues
MNSWDEVRTAFQVARMGTVSGAAEVLGVHHATVIRHVDALEARLGVKLFQRHARGYTATEAGQDLLRVAQATDDQFHQLA
GRIKGRGNEVSGDLVVTSLIDLSSRMVPVLVAFQKAYPDVVVRYLTGERLFRLEYGEAHVAIRAGTVPDQPDNVVQEFRH
HRVALFATTDYIAEHGRPNGVKSFGDHRFVAHDADNSRAPFERWLRQNVPASSIKFRSSDTRAQREAILDGAGIGFLPAF
EAQNHPELVEVHPEQEGWSGPLWLVTHVDLHRTTKVQTFLNFVKEAAKDWVE
>Mature_292_residues
MNSWDEVRTAFQVARMGTVSGAAEVLGVHHATVIRHVDALEARLGVKLFQRHARGYTATEAGQDLLRVAQATDDQFHQLA
GRIKGRGNEVSGDLVVTSLIDLSSRMVPVLVAFQKAYPDVVVRYLTGERLFRLEYGEAHVAIRAGTVPDQPDNVVQEFRH
HRVALFATTDYIAEHGRPNGVKSFGDHRFVAHDADNSRAPFERWLRQNVPASSIKFRSSDTRAQREAILDGAGIGFLPAF
EAQNHPELVEVHPEQEGWSGPLWLVTHVDLHRTTKVQTFLNFVKEAAKDWVE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=293, Percent_Identity=25.5972696245734, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1787128, Length=290, Percent_Identity=23.7931034482759, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1789440, Length=299, Percent_Identity=23.0769230769231, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32655; Mature: 32655

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSWDEVRTAFQVARMGTVSGAAEVLGVHHATVIRHVDALEARLGVKLFQRHARGYTATE
CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
AGQDLLRVAQATDDQFHQLAGRIKGRGNEVSGDLVVTSLIDLSSRMVPVLVAFQKAYPDV
HHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVRYLTGERLFRLEYGEAHVAIRAGTVPDQPDNVVQEFRHHRVALFATTDYIAEHGRPNG
HHHHHCCCEEEEEECCCEEEEEEECCCCCCCHHHHHHHHHCEEEEEEEHHHHHHCCCCCC
VKSFGDHRFVAHDADNSRAPFERWLRQNVPASSIKFRSSDTRAQREAILDGAGIGFLPAF
CCCCCCCEEEEECCCCCCCHHHHHHHHCCCHHHEEECCCHHHHHHHHHHCCCCCCCCCCC
EAQNHPELVEVHPEQEGWSGPLWLVTHVDLHRTTKVQTFLNFVKEAAKDWVE
CCCCCCCEEEECCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNSWDEVRTAFQVARMGTVSGAAEVLGVHHATVIRHVDALEARLGVKLFQRHARGYTATE
CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
AGQDLLRVAQATDDQFHQLAGRIKGRGNEVSGDLVVTSLIDLSSRMVPVLVAFQKAYPDV
HHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVRYLTGERLFRLEYGEAHVAIRAGTVPDQPDNVVQEFRHHRVALFATTDYIAEHGRPNG
HHHHHCCCEEEEEECCCEEEEEEECCCCCCCHHHHHHHHHCEEEEEEEHHHHHHCCCCCC
VKSFGDHRFVAHDADNSRAPFERWLRQNVPASSIKFRSSDTRAQREAILDGAGIGFLPAF
CCCCCCCEEEEECCCCCCCHHHHHHHHCCCHHHEEECCCHHHHHHHHHHCCCCCCCCCCC
EAQNHPELVEVHPEQEGWSGPLWLVTHVDLHRTTKVQTFLNFVKEAAKDWVE
CCCCCCCEEEECCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]