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The map label for this gene is nudC [H]

Identifier: 110678584

GI number: 110678584

Start: 1220393

End: 1221361

Strand: Direct

Name: nudC [H]

Synonym: RD1_1259

Alternate gene names: 110678584

Gene position: 1220393-1221361 (Clockwise)

Preceding gene: 110678581

Following gene: 110678585

Centisome position: 29.53

GC content: 60.68

Gene sequence:

>969_bases
ATGAAACGTGCAGAAACAGTAACTTTTGGCGGCTCAGATCTGGACCGGGCCGGCGAGATCCGCGCCAACCCGGCGGCACT
GGCTGCCACGAAAACCGATCCCGAAAGCCGTGCGGTGCTGTTCTGGCGTGGCAAGCCGCTTTTGTCGCTTGATACCCCGG
CCACGCTTGTGCGCCTGCCGCTGGATCACCCGGTGCTGCGTCATGCGTCACAGGACAGTATTCTGCTCGGGCGCGAAGAC
GGTGCGGCACGGTTTGCCTTTGAATTGTCAAACTGGGTGCCCGAGGATCTGGACGAGGATCAGTTGGGCGGGTTTCTTGA
CCCTTCCGAGCAAAGGCATCCTGATCTGCCGGATGACATGGTATTTGCAGAATTGCGCCGGGTCATGACATGGCTGTCAC
CGCGCGATGCTGAACTGGCCGCCACCGGCAAGGCGGTGTTCGGCTGGCACGCGACCCATGGGTTTTGCGCCTGCTGTGGA
GTGGAGACGGATATGGTGCAGGCGGGCTGGCAACGGCGGTGCCCCGCGTGCAATGCGTCGCATTTTCCGCGCACGGATCC
GGTTGTTATCATGCTGGTGACAAACGGTAACTCTGTGCTGGTCGGGCGTTCGCCGGGATGGCCGGACAAGATGTATTCGC
TCCTCGCGGGGTTTGTCGAACCGGGTGAAACGCTCGAAGCGGCGGTTCGGCGCGAGGTTTTCGAAGAGGTCGGCGTGCGC
ATTGGTGCGGTTGAATATCTTGCCAGCCAGCCATGGCCTTTTCCCGCGTCCTTGATGTTTGGCTGCGCCGCTGAAGCGCT
GAACACGGAGCTGACGATTGACCCGCTGGAAATCGAAGATGCCATGTGGGTCAGCAAGGAAGACATGTTGATCGCTTATT
CAGGGCATCACCCCGATATTCTGCCCGCGCGCAAGGGGGCGATTGCGCATTTCCTGATCCAACACTGGCTGGCGGATCGT
CTGGAGTGA

Upstream 100 bases:

>100_bases
ATGCTGGGGTTGGCAAGGCTTGGTGGCGAGTTTATTGCCCAAGCTCTTGAACTCTTTATGTTTGCATGCAAATGCTCAAC
GCCCATGCGGCGGAGCAGAT

Downstream 100 bases:

>100_bases
CACCGAGTAAACCGCGCAGGGTCAGACAATGGCTGGCGCGCACAGCGCATTGATTTACGCAGTCGCGGCTGCATCTTTGC
GCAAAAGGCAACAAAGGCGT

Product: hydrolase, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MKRAETVTFGGSDLDRAGEIRANPAALAATKTDPESRAVLFWRGKPLLSLDTPATLVRLPLDHPVLRHASQDSILLGRED
GAARFAFELSNWVPEDLDEDQLGGFLDPSEQRHPDLPDDMVFAELRRVMTWLSPRDAELAATGKAVFGWHATHGFCACCG
VETDMVQAGWQRRCPACNASHFPRTDPVVIMLVTNGNSVLVGRSPGWPDKMYSLLAGFVEPGETLEAAVRREVFEEVGVR
IGAVEYLASQPWPFPASLMFGCAAEALNTELTIDPLEIEDAMWVSKEDMLIAYSGHHPDILPARKGAIAHFLIQHWLADR
LE

Sequences:

>Translated_322_residues
MKRAETVTFGGSDLDRAGEIRANPAALAATKTDPESRAVLFWRGKPLLSLDTPATLVRLPLDHPVLRHASQDSILLGRED
GAARFAFELSNWVPEDLDEDQLGGFLDPSEQRHPDLPDDMVFAELRRVMTWLSPRDAELAATGKAVFGWHATHGFCACCG
VETDMVQAGWQRRCPACNASHFPRTDPVVIMLVTNGNSVLVGRSPGWPDKMYSLLAGFVEPGETLEAAVRREVFEEVGVR
IGAVEYLASQPWPFPASLMFGCAAEALNTELTIDPLEIEDAMWVSKEDMLIAYSGHHPDILPARKGAIAHFLIQHWLADR
LE
>Mature_322_residues
MKRAETVTFGGSDLDRAGEIRANPAALAATKTDPESRAVLFWRGKPLLSLDTPATLVRLPLDHPVLRHASQDSILLGRED
GAARFAFELSNWVPEDLDEDQLGGFLDPSEQRHPDLPDDMVFAELRRVMTWLSPRDAELAATGKAVFGWHATHGFCACCG
VETDMVQAGWQRRCPACNASHFPRTDPVVIMLVTNGNSVLVGRSPGWPDKMYSLLAGFVEPGETLEAAVRREVFEEVGVR
IGAVEYLASQPWPFPASLMFGCAAEALNTELTIDPLEIEDAMWVSKEDMLIAYSGHHPDILPARKGAIAHFLIQHWLADR
LE

Specific function: Unknown

COG id: COG2816

COG function: function code L; NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 nudix hydrolase domain [H]

Homologues:

Organism=Homo sapiens, GI13899267, Length=346, Percent_Identity=34.6820809248555, Blast_Score=182, Evalue=3e-46,
Organism=Homo sapiens, GI50593112, Length=265, Percent_Identity=35.4716981132075, Blast_Score=154, Evalue=9e-38,
Organism=Escherichia coli, GI48994995, Length=152, Percent_Identity=36.1842105263158, Blast_Score=118, Evalue=5e-28,
Organism=Caenorhabditis elegans, GI212645999, Length=223, Percent_Identity=28.6995515695067, Blast_Score=94, Evalue=8e-20,
Organism=Caenorhabditis elegans, GI71986510, Length=223, Percent_Identity=28.6995515695067, Blast_Score=94, Evalue=8e-20,
Organism=Saccharomyces cerevisiae, GI6321371, Length=233, Percent_Identity=32.618025751073, Blast_Score=105, Evalue=8e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015375
- InterPro:   IPR022925
- InterPro:   IPR020084
- InterPro:   IPR000086
- InterPro:   IPR015797
- InterPro:   IPR015376 [H]

Pfam domain/function: PF00293 NUDIX; PF09296 NUDIX-like; PF09297 zf-NADH-PPase [H]

EC number: =3.6.1.22 [H]

Molecular weight: Translated: 35506; Mature: 35506

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: PS00893 NUDIX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRAETVTFGGSDLDRAGEIRANPAALAATKTDPESRAVLFWRGKPLLSLDTPATLVRLP
CCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCEEEEECCCCEEEEEC
LDHPVLRHASQDSILLGREDGAARFAFELSNWVPEDLDEDQLGGFLDPSEQRHPDLPDDM
CCCHHHHCCCCCCEEEECCCCCEEEEEEHHCCCCCCCCHHHCCCCCCCCCCCCCCCCHHH
VFAELRRVMTWLSPRDAELAATGKAVFGWHATHGFCACCGVETDMVQAGWQRRCPACNAS
HHHHHHHHHHHCCCCCCCEEECCCEEEEEECCCCEEEEECCCHHHHHHCHHHCCCCCCCC
HFPRTDPVVIMLVTNGNSVLVGRSPGWPDKMYSLLAGFVEPGETLEAAVRREVFEEVGVR
CCCCCCCEEEEEEECCCEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCE
IGAVEYLASQPWPFPASLMFGCAAEALNTELTIDPLEIEDAMWVSKEDMLIAYSGHHPDI
EHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEECCEECCCHHEECCCCEEEEECCCCCCC
LPARKGAIAHFLIQHWLADRLE
CCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKRAETVTFGGSDLDRAGEIRANPAALAATKTDPESRAVLFWRGKPLLSLDTPATLVRLP
CCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCEEEEECCCCEEEEEC
LDHPVLRHASQDSILLGREDGAARFAFELSNWVPEDLDEDQLGGFLDPSEQRHPDLPDDM
CCCHHHHCCCCCCEEEECCCCCEEEEEEHHCCCCCCCCHHHCCCCCCCCCCCCCCCCHHH
VFAELRRVMTWLSPRDAELAATGKAVFGWHATHGFCACCGVETDMVQAGWQRRCPACNAS
HHHHHHHHHHHCCCCCCCEEECCCEEEEEECCCCEEEEECCCHHHHHHCHHHCCCCCCCC
HFPRTDPVVIMLVTNGNSVLVGRSPGWPDKMYSLLAGFVEPGETLEAAVRREVFEEVGVR
CCCCCCCEEEEEEECCCEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCE
IGAVEYLASQPWPFPASLMFGCAAEALNTELTIDPLEIEDAMWVSKEDMLIAYSGHHPDI
EHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEECCEECCCHHEECCCCEEEEECCCCCCC
LPARKGAIAHFLIQHWLADRLE
CCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA