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The map label for this gene is cspA [C]

Identifier: 110678559

GI number: 110678559

Start: 1198093

End: 1198299

Strand: Reverse

Name: cspA [C]

Synonym: RD1_1232

Alternate gene names: 110678559

Gene position: 1198299-1198093 (Counterclockwise)

Preceding gene: 110678560

Following gene: 110678557

Centisome position: 28.99

GC content: 52.17

Gene sequence:

>207_bases
ATGGCCACAGGCACCGTGAAATGGTTTAATACAACAAAAGGCTTCGGCTTTATCGCACCCGATGGCGGATCAAAGGACGT
TTTCGTCCATATTTCTGCGGTCGAACGTGCAGGACTGACCGGCCTGGCTGATAATCAAAAGGTAACTTTTGACATTGAAG
ACGGTCGCGACGGGCGTCAGTCCGCAACGAACCTTGCTCTGGCCTGA

Upstream 100 bases:

>100_bases
GACCTGCTCTCCATGAAACGGCGCTCAGACTTCGATACAGATATACTGCGCCAGGTTATCGCACAAACGCGGATAGCATT
CTTTAGAGGAGACACGGGAT

Downstream 100 bases:

>100_bases
CCGCCACAACTTTGACAAAAAAGTCGGCAATCACATGCCGACTTTGCATTTTGTACGTGCTGGGTAAGCCGAGTTACAGC
AGAACCCGCCAGACCAACAG

Product: cold shock protein CspA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 68; Mature: 67

Protein sequence:

>68_residues
MATGTVKWFNTTKGFGFIAPDGGSKDVFVHISAVERAGLTGLADNQKVTFDIEDGRDGRQSATNLALA

Sequences:

>Translated_68_residues
MATGTVKWFNTTKGFGFIAPDGGSKDVFVHISAVERAGLTGLADNQKVTFDIEDGRDGRQSATNLALA
>Mature_67_residues
ATGTVKWFNTTKGFGFIAPDGGSKDVFVHISAVERAGLTGLADNQKVTFDIEDGRDGRQSATNLALA

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=64, Percent_Identity=54.6875, Blast_Score=76, Evalue=4e-16,
Organism=Escherichia coli, GI2367114, Length=65, Percent_Identity=55.3846153846154, Blast_Score=75, Evalue=7e-16,
Organism=Escherichia coli, GI1789979, Length=65, Percent_Identity=55.3846153846154, Blast_Score=74, Evalue=2e-15,
Organism=Escherichia coli, GI1787834, Length=65, Percent_Identity=53.8461538461538, Blast_Score=73, Evalue=4e-15,
Organism=Escherichia coli, GI1788126, Length=64, Percent_Identity=53.125, Blast_Score=73, Evalue=4e-15,
Organism=Escherichia coli, GI1787839, Length=60, Percent_Identity=58.3333333333333, Blast_Score=71, Evalue=1e-14,
Organism=Escherichia coli, GI1787107, Length=63, Percent_Identity=46.031746031746, Blast_Score=68, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7173; Mature: 7042

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATGTVKWFNTTKGFGFIAPDGGSKDVFVHISAVERAGLTGLADNQKVTFDIEDGRDGRQ
CCCCEEEEEECCCCCEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCC
SATNLALA
CCCEEECC
>Mature Secondary Structure 
ATGTVKWFNTTKGFGFIAPDGGSKDVFVHISAVERAGLTGLADNQKVTFDIEDGRDGRQ
CCCEEEEEECCCCCEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCC
SATNLALA
CCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]