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The map label for this gene is mcpA [H]

Identifier: 110678498

GI number: 110678498

Start: 1129920

End: 1132295

Strand: Reverse

Name: mcpA [H]

Synonym: RD1_1168

Alternate gene names: 110678498

Gene position: 1132295-1129920 (Counterclockwise)

Preceding gene: 110678499

Following gene: 110678490

Centisome position: 27.4

GC content: 53.79

Gene sequence:

>2376_bases
ATGATTGCGCTCATCATGTTGGTTGGCGGTTTCGCGATTTTTCAAACCAACAGCCTCGCGAAGACGCTTAAGGACTATCG
CCAGATCGCAACATCCGAAGTCTTGGCAACACATATGGAAGAGGACCTCTTCAAAACACGCATATCCGCCTATCGGTTCA
GATCAGACAAAAACCCCGAAAACCTGACTGATTTGTCAGGGCATGTTGCGTCCATCATGGACCAGCAAGCCGAGCTCTAC
GAGCGCCTTTCTGGGTCCATGGTTCAGGATCAAATCATTCCAATTCCAGACTTGCTCACCGAATACGAAGCGCTGATGAA
AGATGCCGTAGAACTGCAACAGGAGCGCGATGCATTGGTCGCACAAACAAGCGCCATTGGAAGCAAAGCACGCCAACAAC
TGTCCGAAGTCATGTCGGTCGCACTCGAAGACCGCGACACCGAGGCAAGCTCGCTGGCGGGTTTGGCCTCGACCAACCTG
ATGCTGGCGCGCCTCTATCTCGAGCGTTTCCTTGTCTATAACAACCCCGATGACGCAGAACGCGCAAGTCTGGAGACCGA
GAATGCACGCGCGGGCGTGAACCGTTTGCTCTTCACACTCCGCAATGCCAACCGTCGAGAATTGGCAAAGCAAACGCTTA
CCGACCTCGATCAATTCGAAGCCGCTTCTGCGAATGTCACGGAAATCATTCAGACGCGAAACGCTAAATTTACGCGGATG
GATGAGATCGGGCCAATCGCACTGGACAAACTTGCCGCTGTCGTGAGTGATTTGTCAGCGCGTCAAAAAGTGTTGGGCGC
CGCGAGTTCGGCTCGGGCAGAAAGCGCCATTCTAGCCGTAATAGCCATGGTTTCGGGCGGTACAGTCATTGGCGCTCTGC
TGGCTTTCTTTACGGGGCGTATTATTTCGCGCCGCCTGACCAAGATCACCGAAGACATGGGTGAGCTTGCCGATGGCAAC
CTTGACGTTGATATCCAACGCAGTACTGAAAAGCATGAGATTGGCAAGATGACAAATGCCATGGTTGTATTCCTCGAAAA
CGCGCGCAAAGCACGCGACCTCGATCTCGAAGTCAAGGAGAACGAACGGCTAGAGCGTGAACGCGAAGTGGCTGAACAGG
CGCGTGAAGCGAAAGTAGAAGCAGAACGCCGTGCCGCAGAAGAGCGCGAACGCCAAGCGGAGCTGCAGCGCATGAAAACG
CTTGAGAACTTTCAGAAGGATATGGAACGCGTGCTGGGCGAAGCTGCGTCAGGTAACTTCTCCAACCGCATGTCGGACTC
AATGGAGGATGCGGGACTCGTGGCTTTGGCAGGTGTTATAAACCGGTTGCTGGAGGTTACGGAAACCAACATCGCGGACG
TCGTGCGGAGCATTGATGAGCTATCCAAAGGTAATCTGGGCATCCGGATCGAAGGCAAGCGCGAAGGTGCATTTTTGCAG
ATGAAGGACGATTTCAACACCGCTTTGACAACGCTGTCGGCAACGATGGCGCGCATCATGCAGAGTGGGCAGACCGTGTC
GGCAACATCTTCTGAACTGGAGGATTCGGCATTGGGTATGGCGAAACGCGCAGAGGACAATGCAGCCGCCGTGGAAGAGA
CTTCAGCCGCGATTGAGGAAATTTCAGCGAGCGTTCGCCAAGTCGTGAACAACGCAAAAGCTGCAAACGACGCTACGAAA
AAAGTACGTGAAAGCGCTGACAAATCACGCCATATCTCCAACGATACAGAAGCTTCGATCAATGAGATGACGGAAGCATC
CGCGCAGATCAACAACGTGGTGAAGGTGATTGAGGATATCGCATTCCAAATCAACCTTCTTGCATTGAATGCCGGTGTGG
AGGCCGCACGCGCGGGCGAGGCCGGGCGCGGGTTCTCAGTTGTTGCATCAGAAGTGCGCGGGCTTGCACAACGTTCTCAA
GAAGCGGTCCAGGAAATCGGGCAAGTCATAGAAAAGAACAACCGAAGCGTCGAAGTGGGCGTTGAAAAGGTTGCACGGTC
GAGACAGGCGCTCGAAGGCATTATTGCCGATGTGGAAGTCGCGTCGGACCAAATCTCAGCCATCGCATCTGCCGTGGAAG
AACAGGCCGTTGGCATTGATGAAGTAAACTCTGCCGTGCGTTCTATCGACACCACCACACAAACAAACGCCGCCGCTCTT
GAGGAGATGACAGCGTCCAGCGTATCGCTCAGCCAAGAGGCGAGCGAACTCGCCAATACATTGGGCCAATTCCACGGGAT
CGATCTTGATGCAGTACGTCCTATCGAGCCAAAAGCAGCGCCCGGCGATACACAAGAAGTACATCGAGGCCAAAAGATAA
AGGATGAAAATGGCGCGATGAAAGCGACTGGCACAACAGGTTGGGAGGAGTTTTAA

Upstream 100 bases:

>100_bases
AAGTGTTTGGAAACACTCTCGCTATAGGACAGCGCAAGTATCAGTAATCAGGAAGTCGACTATGTCTCTCGTCATGCGCA
TCTACGTTGGAATGGGGGCG

Downstream 100 bases:

>100_bases
CGCATTCTATCGGAAAGCTCAGGCGATATCTCGATCGCGCCGAGTGTGGATGTTGGACCACGCTGGGTATGCGTGCAATC
GTTCAAAACGAACAAGGCTC

Product: methyl-accepting chemotaxis protein, putative

Products: NA

Alternate protein names: Methyl-accepting chemotaxis protein [H]

Number of amino acids: Translated: 791; Mature: 791

Protein sequence:

>791_residues
MIALIMLVGGFAIFQTNSLAKTLKDYRQIATSEVLATHMEEDLFKTRISAYRFRSDKNPENLTDLSGHVASIMDQQAELY
ERLSGSMVQDQIIPIPDLLTEYEALMKDAVELQQERDALVAQTSAIGSKARQQLSEVMSVALEDRDTEASSLAGLASTNL
MLARLYLERFLVYNNPDDAERASLETENARAGVNRLLFTLRNANRRELAKQTLTDLDQFEAASANVTEIIQTRNAKFTRM
DEIGPIALDKLAAVVSDLSARQKVLGAASSARAESAILAVIAMVSGGTVIGALLAFFTGRIISRRLTKITEDMGELADGN
LDVDIQRSTEKHEIGKMTNAMVVFLENARKARDLDLEVKENERLEREREVAEQAREAKVEAERRAAEERERQAELQRMKT
LENFQKDMERVLGEAASGNFSNRMSDSMEDAGLVALAGVINRLLEVTETNIADVVRSIDELSKGNLGIRIEGKREGAFLQ
MKDDFNTALTTLSATMARIMQSGQTVSATSSELEDSALGMAKRAEDNAAAVEETSAAIEEISASVRQVVNNAKAANDATK
KVRESADKSRHISNDTEASINEMTEASAQINNVVKVIEDIAFQINLLALNAGVEAARAGEAGRGFSVVASEVRGLAQRSQ
EAVQEIGQVIEKNNRSVEVGVEKVARSRQALEGIIADVEVASDQISAIASAVEEQAVGIDEVNSAVRSIDTTTQTNAAAL
EEMTASSVSLSQEASELANTLGQFHGIDLDAVRPIEPKAAPGDTQEVHRGQKIKDENGAMKATGTTGWEEF

Sequences:

>Translated_791_residues
MIALIMLVGGFAIFQTNSLAKTLKDYRQIATSEVLATHMEEDLFKTRISAYRFRSDKNPENLTDLSGHVASIMDQQAELY
ERLSGSMVQDQIIPIPDLLTEYEALMKDAVELQQERDALVAQTSAIGSKARQQLSEVMSVALEDRDTEASSLAGLASTNL
MLARLYLERFLVYNNPDDAERASLETENARAGVNRLLFTLRNANRRELAKQTLTDLDQFEAASANVTEIIQTRNAKFTRM
DEIGPIALDKLAAVVSDLSARQKVLGAASSARAESAILAVIAMVSGGTVIGALLAFFTGRIISRRLTKITEDMGELADGN
LDVDIQRSTEKHEIGKMTNAMVVFLENARKARDLDLEVKENERLEREREVAEQAREAKVEAERRAAEERERQAELQRMKT
LENFQKDMERVLGEAASGNFSNRMSDSMEDAGLVALAGVINRLLEVTETNIADVVRSIDELSKGNLGIRIEGKREGAFLQ
MKDDFNTALTTLSATMARIMQSGQTVSATSSELEDSALGMAKRAEDNAAAVEETSAAIEEISASVRQVVNNAKAANDATK
KVRESADKSRHISNDTEASINEMTEASAQINNVVKVIEDIAFQINLLALNAGVEAARAGEAGRGFSVVASEVRGLAQRSQ
EAVQEIGQVIEKNNRSVEVGVEKVARSRQALEGIIADVEVASDQISAIASAVEEQAVGIDEVNSAVRSIDTTTQTNAAAL
EEMTASSVSLSQEASELANTLGQFHGIDLDAVRPIEPKAAPGDTQEVHRGQKIKDENGAMKATGTTGWEEF
>Mature_791_residues
MIALIMLVGGFAIFQTNSLAKTLKDYRQIATSEVLATHMEEDLFKTRISAYRFRSDKNPENLTDLSGHVASIMDQQAELY
ERLSGSMVQDQIIPIPDLLTEYEALMKDAVELQQERDALVAQTSAIGSKARQQLSEVMSVALEDRDTEASSLAGLASTNL
MLARLYLERFLVYNNPDDAERASLETENARAGVNRLLFTLRNANRRELAKQTLTDLDQFEAASANVTEIIQTRNAKFTRM
DEIGPIALDKLAAVVSDLSARQKVLGAASSARAESAILAVIAMVSGGTVIGALLAFFTGRIISRRLTKITEDMGELADGN
LDVDIQRSTEKHEIGKMTNAMVVFLENARKARDLDLEVKENERLEREREVAEQAREAKVEAERRAAEERERQAELQRMKT
LENFQKDMERVLGEAASGNFSNRMSDSMEDAGLVALAGVINRLLEVTETNIADVVRSIDELSKGNLGIRIEGKREGAFLQ
MKDDFNTALTTLSATMARIMQSGQTVSATSSELEDSALGMAKRAEDNAAAVEETSAAIEEISASVRQVVNNAKAANDATK
KVRESADKSRHISNDTEASINEMTEASAQINNVVKVIEDIAFQINLLALNAGVEAARAGEAGRGFSVVASEVRGLAQRSQ
EAVQEIGQVIEKNNRSVEVGVEKVARSRQALEGIIADVEVASDQISAIASAVEEQAVGIDEVNSAVRSIDTTTQTNAAAL
EEMTASSVSLSQEASELANTLGQFHGIDLDAVRPIEPKAAPGDTQEVHRGQKIKDENGAMKATGTTGWEEF

Specific function: Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein. Note=Localized at the flagellum-bearing pole of the swarmer cell [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI1788195, Length=273, Percent_Identity=35.8974358974359, Blast_Score=152, Evalue=6e-38,
Organism=Escherichia coli, GI1787690, Length=308, Percent_Identity=33.7662337662338, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI2367378, Length=289, Percent_Identity=34.2560553633218, Blast_Score=144, Evalue=2e-35,
Organism=Escherichia coli, GI1788194, Length=353, Percent_Identity=31.728045325779, Blast_Score=139, Evalue=5e-34,
Organism=Escherichia coli, GI1789453, Length=215, Percent_Identity=34.4186046511628, Blast_Score=116, Evalue=7e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal [H]

EC number: NA

Molecular weight: Translated: 85988; Mature: 85988

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIALIMLVGGFAIFQTNSLAKTLKDYRQIATSEVLATHMEEDLFKTRISAYRFRSDKNPE
CEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
NLTDLSGHVASIMDQQAELYERLSGSMVQDQIIPIPDLLTEYEALMKDAVELQQERDALV
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AQTSAIGSKARQQLSEVMSVALEDRDTEASSLAGLASTNLMLARLYLERFLVYNNPDDAE
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
RASLETENARAGVNRLLFTLRNANRRELAKQTLTDLDQFEAASANVTEIIQTRNAKFTRM
HHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCH
DEIGPIALDKLAAVVSDLSARQKVLGAASSARAESAILAVIAMVSGGTVIGALLAFFTGR
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
IISRRLTKITEDMGELADGNLDVDIQRSTEKHEIGKMTNAMVVFLENARKARDLDLEVKE
HHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHEEHHCCCCCCCCCEECH
NERLEREREVAEQAREAKVEAERRAAEERERQAELQRMKTLENFQKDMERVLGEAASGNF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SNRMSDSMEDAGLVALAGVINRLLEVTETNIADVVRSIDELSKGNLGIRIEGKREGAFLQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEECCCCCCEEE
MKDDFNTALTTLSATMARIMQSGQTVSATSSELEDSALGMAKRAEDNAAAVEETSAAIEE
ECCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
ISASVRQVVNNAKAANDATKKVRESADKSRHISNDTEASINEMTEASAQINNVVKVIEDI
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AFQINLLALNAGVEAARAGEAGRGFSVVASEVRGLAQRSQEAVQEIGQVIEKNNRSVEVG
HHHHEEEEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHH
VEKVARSRQALEGIIADVEVASDQISAIASAVEEQAVGIDEVNSAVRSIDTTTQTNAAAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHH
EEMTASSVSLSQEASELANTLGQFHGIDLDAVRPIEPKAAPGDTQEVHRGQKIKDENGAM
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCE
KATGTTGWEEF
EECCCCCCCCC
>Mature Secondary Structure
MIALIMLVGGFAIFQTNSLAKTLKDYRQIATSEVLATHMEEDLFKTRISAYRFRSDKNPE
CEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
NLTDLSGHVASIMDQQAELYERLSGSMVQDQIIPIPDLLTEYEALMKDAVELQQERDALV
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AQTSAIGSKARQQLSEVMSVALEDRDTEASSLAGLASTNLMLARLYLERFLVYNNPDDAE
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
RASLETENARAGVNRLLFTLRNANRRELAKQTLTDLDQFEAASANVTEIIQTRNAKFTRM
HHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCH
DEIGPIALDKLAAVVSDLSARQKVLGAASSARAESAILAVIAMVSGGTVIGALLAFFTGR
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
IISRRLTKITEDMGELADGNLDVDIQRSTEKHEIGKMTNAMVVFLENARKARDLDLEVKE
HHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHEEHHCCCCCCCCCEECH
NERLEREREVAEQAREAKVEAERRAAEERERQAELQRMKTLENFQKDMERVLGEAASGNF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SNRMSDSMEDAGLVALAGVINRLLEVTETNIADVVRSIDELSKGNLGIRIEGKREGAFLQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEECCCCCCEEE
MKDDFNTALTTLSATMARIMQSGQTVSATSSELEDSALGMAKRAEDNAAAVEETSAAIEE
ECCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
ISASVRQVVNNAKAANDATKKVRESADKSRHISNDTEASINEMTEASAQINNVVKVIEDI
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AFQINLLALNAGVEAARAGEAGRGFSVVASEVRGLAQRSQEAVQEIGQVIEKNNRSVEVG
HHHHEEEEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHH
VEKVARSRQALEGIIADVEVASDQISAIASAVEEQAVGIDEVNSAVRSIDTTTQTNAAAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHH
EEMTASSVSLSQEASELANTLGQFHGIDLDAVRPIEPKAAPGDTQEVHRGQKIKDENGAM
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCE
KATGTTGWEEF
EECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1577276; 11259647 [H]