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The map label for this gene is aggA [H]

Identifier: 110678460

GI number: 110678460

Start: 1089512

End: 1090924

Strand: Reverse

Name: aggA [H]

Synonym: RD1_1125

Alternate gene names: 110678460

Gene position: 1090924-1089512 (Counterclockwise)

Preceding gene: 110678464

Following gene: 110678459

Centisome position: 26.39

GC content: 59.31

Gene sequence:

>1413_bases
ATGAAGACGAAAACAAGCATCCTCGCTTTCGCGCTGGGGTTGTGTATATCGCAACCTGCGTCGGCGCTGTCGCTGGAAGA
CGCCATTCTGTTCGTGTTGGAAACCAACCCTGAGATCAAGGCCGCCGAAGCCAACAAGCAGGCGATTGAATTCGAACTTG
ATCAGGCCAGAAGCTTTTTCGCCCCGCGCGTTGAATTTGAATCCCGCGCCGAGGGCAGCATCAATGATGGCACGCGCACC
AGTGATCTGACCTCCTCGGACGATGCGATTTTCGGCTATGAGGTCACGGGCCGCGTGACGCAGCGGCTTTATGACGGCAA
GGCGACACGGTCGGAAGTGGAGCGGCAGGCCTACCGGATCGACGCCGCCGCCTATCGCGTTCTTGAGCGTGCCGAATTTT
TGTCGCTCGAGGCCATTCGCGTCTACAGCGACGTTCTGCGCACCCAACGGGTGACGCAACTGGCCCGCGAAAACCTGACC
TATCACCGTGACATCCTCGAACAAATCCGCAGCGGGTTTGACAATGGCATTCTCGGGATCGGCGATCTGCAACAGGCCGA
AGAACGCCTGTTTCTCGCCGAAGACACCCTGCTGCAATTCGAATTGAACGAAATGGACACACGCGCCCTGTTTCTGGAAA
CCGTTGGCGTGACCCCTGATGGATTGAACGCGGTGCCAAGCCCTGCCGCGCGCTTGCCGGCAACGGTCGAAGAGACGCTT
GCCACGGCGTGGCGGCGCAACCCGACAATCCTGTTCTTCCAATCCGACGTCGGGGCCGCCGAGGCCTTGTCGCGCACAGC
GAATGCCAACAGGGCGCCCACGCTCGATCTCGAAGCGGTCACGCGCTACGGGGACGATATGCGTGGCTTTGAAGGGGAAG
TGCGCGATGCATCGGTCGGCCTCGTTTTACGCTATGAATTTCAGGGCAACCGCAAGCGCGGCGAACGCGAAGAACAAGTG
CGCCGCGTGGGAGAGCAACGCGCCCGGCTTTTGACGCAGACCCGTTTGGTTGAACGTGAAGTGCGACAATCCTGGGCGAA
CCTGCAGTCGGCCCTGCGCCGCGCCGATATCCTTGAGCGACAGGCCACCCTGTCCCGCGACTTGCTGGAAAGCTATACGC
AGGAATTTGATGTCGGAAACCGCTCACTGCTGGATGTTTTGAACACGCAGAACGCGCTGTTCCAATCCGAAGTAAATTTA
CAGAATGCTAGGTCTTTGGAGGTATTCCTGAAATACCGTCTACTGGCTGCGGCAGGAATCCTGCTGCCATCACTTGGAAT
CGAGCCGCCGGAAGACAGCAATGCATATGCCGCCAGCGCCGAAGGGGCACCGGGGGTCAGTTCCGAACCCGTGAAGCTGC
GCGATGACGCGCGCGGCTTTAGCGATTGGCGCAAAAGCGTACAGTCTGAGTGA

Upstream 100 bases:

>100_bases
TCTGTACAATTCCCAGTGGAGACTATTTGTTATGTGTTAAAAGAGCAGAATAAAAAATCACAGTGGGTTGCAAGTTATGA
TGTTGTCCAAACAGGCACTG

Downstream 100 bases:

>100_bases
CCGCAGAACGGAGGGTTCCCATCTCCAAACCGGATAAACCAGCCAAATCGCGGGTCGCGCGTATCACCACAGGCAGCGGC
ACAGAGGCCAAAACACAGGA

Product: agglutination protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 470; Mature: 470

Protein sequence:

>470_residues
MKTKTSILAFALGLCISQPASALSLEDAILFVLETNPEIKAAEANKQAIEFELDQARSFFAPRVEFESRAEGSINDGTRT
SDLTSSDDAIFGYEVTGRVTQRLYDGKATRSEVERQAYRIDAAAYRVLERAEFLSLEAIRVYSDVLRTQRVTQLARENLT
YHRDILEQIRSGFDNGILGIGDLQQAEERLFLAEDTLLQFELNEMDTRALFLETVGVTPDGLNAVPSPAARLPATVEETL
ATAWRRNPTILFFQSDVGAAEALSRTANANRAPTLDLEAVTRYGDDMRGFEGEVRDASVGLVLRYEFQGNRKRGEREEQV
RRVGEQRARLLTQTRLVEREVRQSWANLQSALRRADILERQATLSRDLLESYTQEFDVGNRSLLDVLNTQNALFQSEVNL
QNARSLEVFLKYRLLAAAGILLPSLGIEPPEDSNAYAASAEGAPGVSSEPVKLRDDARGFSDWRKSVQSE

Sequences:

>Translated_470_residues
MKTKTSILAFALGLCISQPASALSLEDAILFVLETNPEIKAAEANKQAIEFELDQARSFFAPRVEFESRAEGSINDGTRT
SDLTSSDDAIFGYEVTGRVTQRLYDGKATRSEVERQAYRIDAAAYRVLERAEFLSLEAIRVYSDVLRTQRVTQLARENLT
YHRDILEQIRSGFDNGILGIGDLQQAEERLFLAEDTLLQFELNEMDTRALFLETVGVTPDGLNAVPSPAARLPATVEETL
ATAWRRNPTILFFQSDVGAAEALSRTANANRAPTLDLEAVTRYGDDMRGFEGEVRDASVGLVLRYEFQGNRKRGEREEQV
RRVGEQRARLLTQTRLVEREVRQSWANLQSALRRADILERQATLSRDLLESYTQEFDVGNRSLLDVLNTQNALFQSEVNL
QNARSLEVFLKYRLLAAAGILLPSLGIEPPEDSNAYAASAEGAPGVSSEPVKLRDDARGFSDWRKSVQSE
>Mature_470_residues
MKTKTSILAFALGLCISQPASALSLEDAILFVLETNPEIKAAEANKQAIEFELDQARSFFAPRVEFESRAEGSINDGTRT
SDLTSSDDAIFGYEVTGRVTQRLYDGKATRSEVERQAYRIDAAAYRVLERAEFLSLEAIRVYSDVLRTQRVTQLARENLT
YHRDILEQIRSGFDNGILGIGDLQQAEERLFLAEDTLLQFELNEMDTRALFLETVGVTPDGLNAVPSPAARLPATVEETL
ATAWRRNPTILFFQSDVGAAEALSRTANANRAPTLDLEAVTRYGDDMRGFEGEVRDASVGLVLRYEFQGNRKRGEREEQV
RRVGEQRARLLTQTRLVEREVRQSWANLQSALRRADILERQATLSRDLLESYTQEFDVGNRSLLDVLNTQNALFQSEVNL
QNARSLEVFLKYRLLAAAGILLPSLGIEPPEDSNAYAASAEGAPGVSSEPVKLRDDARGFSDWRKSVQSE

Specific function: Involved in the efflux of toxic and relatively hydrophobic compounds. Influences survival inside the host [H]

COG id: COG1538

COG function: function code MU; Outer membrane protein

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

None

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 240 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010130 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 52525; Mature: 52525

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTKTSILAFALGLCISQPASALSLEDAILFVLETNPEIKAAEANKQAIEFELDQARSFF
CCCHHHHHHHHHHHHHCCCCHHCCCCCEEEEEEECCCCCEECCCCCHHHEEEHHHHHHHH
APRVEFESRAEGSINDGTRTSDLTSSDDAIFGYEVTGRVTQRLYDGKATRSEVERQAYRI
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHH
DAAAYRVLERAEFLSLEAIRVYSDVLRTQRVTQLARENLTYHRDILEQIRSGFDNGILGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCC
GDLQQAEERLFLAEDTLLQFELNEMDTRALFLETVGVTPDGLNAVPSPAARLPATVEETL
CCHHHHHHHHHHCCCCEEEEECCHHCHHEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHH
ATAWRRNPTILFFQSDVGAAEALSRTANANRAPTLDLEAVTRYGDDMRGFEGEVRDASVG
HHHHCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCHHHHHHCCCHHCCCCCCCCCCEEE
LVLRYEFQGNRKRGEREEQVRRVGEQRARLLTQTRLVEREVRQSWANLQSALRRADILER
EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QATLSRDLLESYTQEFDVGNRSLLDVLNTQNALFQSEVNLQNARSLEVFLKYRLLAAAGI
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
LLPSLGIEPPEDSNAYAASAEGAPGVSSEPVKLRDDARGFSDWRKSVQSE
HHHCCCCCCCCCCCCEEECCCCCCCCCCCCEECCHHCCCHHHHHHHHCCC
>Mature Secondary Structure
MKTKTSILAFALGLCISQPASALSLEDAILFVLETNPEIKAAEANKQAIEFELDQARSFF
CCCHHHHHHHHHHHHHCCCCHHCCCCCEEEEEEECCCCCEECCCCCHHHEEEHHHHHHHH
APRVEFESRAEGSINDGTRTSDLTSSDDAIFGYEVTGRVTQRLYDGKATRSEVERQAYRI
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHH
DAAAYRVLERAEFLSLEAIRVYSDVLRTQRVTQLARENLTYHRDILEQIRSGFDNGILGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCC
GDLQQAEERLFLAEDTLLQFELNEMDTRALFLETVGVTPDGLNAVPSPAARLPATVEETL
CCHHHHHHHHHHCCCCEEEEECCHHCHHEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHH
ATAWRRNPTILFFQSDVGAAEALSRTANANRAPTLDLEAVTRYGDDMRGFEGEVRDASVG
HHHHCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCHHHHHHCCCHHCCCCCCCCCCEEE
LVLRYEFQGNRKRGEREEQVRRVGEQRARLLTQTRLVEREVRQSWANLQSALRRADILER
EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QATLSRDLLESYTQEFDVGNRSLLDVLNTQNALFQSEVNLQNARSLEVFLKYRLLAAAGI
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
LLPSLGIEPPEDSNAYAASAEGAPGVSSEPVKLRDDARGFSDWRKSVQSE
HHHCCCCCCCCCCCCEEECCCCCCCCCCCCEECCHHCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12271122 [H]