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The map label for this gene is agpA [H]

Identifier: 110678437

GI number: 110678437

Start: 1052180

End: 1054105

Strand: Reverse

Name: agpA [H]

Synonym: RD1_1101

Alternate gene names: 110678437

Gene position: 1054105-1052180 (Counterclockwise)

Preceding gene: 110678438

Following gene: 110678436

Centisome position: 25.5

GC content: 58.77

Gene sequence:

>1926_bases
ATGTATAGATTTCTGTCTGCCCTTATCGTGATCATTTGCCTGCATCAGCCCGCTCTGGCGCAGACACCGGCGGCTCTTCA
GGAAAGCAGTTTCTGGGCGCAGGAAGTGTCCGCCGGGAACATGCCACCCGTTGCCGAACGTTTGCCGGTTGACCCGCTCG
TCGTTGATCTCACCGCGAAGGGGCGCACCTATGGGCAACAGGGGGGCACGCTGCGCACGCTGATCTCGCGTTCAAAGGAC
GTGCGCCAGATGGTCGTCTACGGCTACGCCCGGCTGGTCGGATATGATCACAACTATGAAATCTATCCGGACATCCTGCG
CGATGTTGAAGTCGAGGAAGGGCGCAAGTTCACCTTGCACCTGCGCCGGGGACACAAGTGGTCTGATGGCCAACCTTTCA
CCTCTGCCGACTTTGAATACTACTGGCGTCATGTTGCCCTGAACAAGGAATTGAGCCCGTCCGGTCCGCCGCAAAACCTC
TTTGTGGATGGTGTGTTGGCCAGCATGACATTCCCGGATGCGCATACCGTGGTCATCGAATGGCCCACGCCGAACCCCGG
TTTCTTGCAGCTTCTTGCGCAGGCAAGCCCCTTCCTGATCTATCGACCGGCGCATTACCTCAAACAGTTTCACGCCGATT
TCGTGGACAAGAAAGACCTGCGCAAACAGATCAAGAAGGCGCGGGTCAGAACCTGGGCCGCGCTGCACAACGGGCTTGAT
AACATGTACAAGTTCGACAATCCGGCGCTGCCCACCCTGCAACCCTGGATCAACGCCAGTGCTGGTAAATCCAGCCAGCG
GCTGTTTGTGCGCAACCCCTATTACCACCGGGTGGACAAGCGCGGCGTGCAACTGCCCTATATCGACATTGTCAAAATGA
CCGTCGTGGGTGGCGGGCTGATCGCGGCAAAGGCCAACGCCGGCGAGGTCGATTTACAGGCCCGCGGTCTGGATTTCCCC
GATATCTCCATCCTGAAGAAGGGTGAGGTAGATGGCGCGGGATATAAAACGCTGCTTTGGGCGAACAGTACGGCGAACCA
GATTGCAATTTATCCAAACCTGAACTTTGCGGACCCGGTCTGGCGCGAGGTCATCCGCGATGTGCGGTTCAGACGCGCGC
TGTCGATGGGCATTGACCGGCGCATGATCAACCGCGCGCTCTACTTTGGCCTTGCCTCCGAGGGGGGGATGACCGCCCTG
CCCGCGAGCCCGTTTTATGACACCGCAAATGTGTACAAATGGTCTGTCTACTATCCCGCCAAGGCCAACGCATTGCTGGA
TGAAATGGGCCTGACCGAGCGGACAGCAGATGGGATCCGCCTGCTGCCCGACGGACGCCCGATGGAATTTGTGATCGAGA
CCGCGGGCGAGCGCAAGGAGGTTGAAAACGCGCTGGCGATCATCACCGACACATGGCGCGAGATCGGCGTCAAACTGGTC
ATGCGCCCGCTGGATCGCGACATCCTGCGCAACCGCGTCTATTCAGGCCTGAGCATGGCCGCCGTCTGGTTCGGCTGGGA
CAATGGGTTGCCGCAACCCTATACGCCGCCGGAATATCTTGCGCCCAAACATCAGGAATTTTTCGCCTGGCCCAAATGGG
GGCAGTATTATCAGACCGGTGGCGAGGTCGGCGAAGCACCCGATATGCCAGCGCCCAAACGCCTGATGCAGCTTAGCTAC
GACTGGAGCCATACAACAGACCCTGCTCTGCGCTCGGAAATCTGGCGCGAAATGCTGGCGATCCACGCGGATAATCAGTT
CGGGATCGGCATACTGGCCCAAGCCCCCCAACCCATTGTCGTCTCGGAACGCCTGCGCAATGTGCCGGAAACAGGCAAAT
GGGCATGGGATCCGGGGGCGCATTTCGGCATCCACCGCATAGACGAATTTTACTACGAAGACGCCTTTCAGCAGTTCACC
CAATGA

Upstream 100 bases:

>100_bases
GGTGCGGGCTCACCAGCCAGCTGGCCCGATGAATTCCGCTTTGAGGGGGTCGCGGCCCCGGCGTTAACTGAACTCGCACC
CGGTCATAAGGTACGTTGTC

Downstream 100 bases:

>100_bases
TGTTTCTCCGCTACGCCATCTATCGGTTTATCACGATGCTGCTGACCCTCTGGGTCGTGTCGCTGCTGATTTTCGTGATC
ATCAATCTGCCTCCGGGGGA

Product: oligopeptide ABC transporter, periplasmic binding protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 641; Mature: 641

Protein sequence:

>641_residues
MYRFLSALIVIICLHQPALAQTPAALQESSFWAQEVSAGNMPPVAERLPVDPLVVDLTAKGRTYGQQGGTLRTLISRSKD
VRQMVVYGYARLVGYDHNYEIYPDILRDVEVEEGRKFTLHLRRGHKWSDGQPFTSADFEYYWRHVALNKELSPSGPPQNL
FVDGVLASMTFPDAHTVVIEWPTPNPGFLQLLAQASPFLIYRPAHYLKQFHADFVDKKDLRKQIKKARVRTWAALHNGLD
NMYKFDNPALPTLQPWINASAGKSSQRLFVRNPYYHRVDKRGVQLPYIDIVKMTVVGGGLIAAKANAGEVDLQARGLDFP
DISILKKGEVDGAGYKTLLWANSTANQIAIYPNLNFADPVWREVIRDVRFRRALSMGIDRRMINRALYFGLASEGGMTAL
PASPFYDTANVYKWSVYYPAKANALLDEMGLTERTADGIRLLPDGRPMEFVIETAGERKEVENALAIITDTWREIGVKLV
MRPLDRDILRNRVYSGLSMAAVWFGWDNGLPQPYTPPEYLAPKHQEFFAWPKWGQYYQTGGEVGEAPDMPAPKRLMQLSY
DWSHTTDPALRSEIWREMLAIHADNQFGIGILAQAPQPIVVSERLRNVPETGKWAWDPGAHFGIHRIDEFYYEDAFQQFT
Q

Sequences:

>Translated_641_residues
MYRFLSALIVIICLHQPALAQTPAALQESSFWAQEVSAGNMPPVAERLPVDPLVVDLTAKGRTYGQQGGTLRTLISRSKD
VRQMVVYGYARLVGYDHNYEIYPDILRDVEVEEGRKFTLHLRRGHKWSDGQPFTSADFEYYWRHVALNKELSPSGPPQNL
FVDGVLASMTFPDAHTVVIEWPTPNPGFLQLLAQASPFLIYRPAHYLKQFHADFVDKKDLRKQIKKARVRTWAALHNGLD
NMYKFDNPALPTLQPWINASAGKSSQRLFVRNPYYHRVDKRGVQLPYIDIVKMTVVGGGLIAAKANAGEVDLQARGLDFP
DISILKKGEVDGAGYKTLLWANSTANQIAIYPNLNFADPVWREVIRDVRFRRALSMGIDRRMINRALYFGLASEGGMTAL
PASPFYDTANVYKWSVYYPAKANALLDEMGLTERTADGIRLLPDGRPMEFVIETAGERKEVENALAIITDTWREIGVKLV
MRPLDRDILRNRVYSGLSMAAVWFGWDNGLPQPYTPPEYLAPKHQEFFAWPKWGQYYQTGGEVGEAPDMPAPKRLMQLSY
DWSHTTDPALRSEIWREMLAIHADNQFGIGILAQAPQPIVVSERLRNVPETGKWAWDPGAHFGIHRIDEFYYEDAFQQFT
Q
>Mature_641_residues
MYRFLSALIVIICLHQPALAQTPAALQESSFWAQEVSAGNMPPVAERLPVDPLVVDLTAKGRTYGQQGGTLRTLISRSKD
VRQMVVYGYARLVGYDHNYEIYPDILRDVEVEEGRKFTLHLRRGHKWSDGQPFTSADFEYYWRHVALNKELSPSGPPQNL
FVDGVLASMTFPDAHTVVIEWPTPNPGFLQLLAQASPFLIYRPAHYLKQFHADFVDKKDLRKQIKKARVRTWAALHNGLD
NMYKFDNPALPTLQPWINASAGKSSQRLFVRNPYYHRVDKRGVQLPYIDIVKMTVVGGGLIAAKANAGEVDLQARGLDFP
DISILKKGEVDGAGYKTLLWANSTANQIAIYPNLNFADPVWREVIRDVRFRRALSMGIDRRMINRALYFGLASEGGMTAL
PASPFYDTANVYKWSVYYPAKANALLDEMGLTERTADGIRLLPDGRPMEFVIETAGERKEVENALAIITDTWREIGVKLV
MRPLDRDILRNRVYSGLSMAAVWFGWDNGLPQPYTPPEYLAPKHQEFFAWPKWGQYYQTGGEVGEAPDMPAPKRLMQLSY
DWSHTTDPALRSEIWREMLAIHADNQFGIGILAQAPQPIVVSERLRNVPETGKWAWDPGAHFGIHRIDEFYYEDAFQQFT
Q

Specific function: Probably involved in an alpha-galactosides intake transport system [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 72822; Mature: 72822

Theoretical pI: Translated: 7.90; Mature: 7.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYRFLSALIVIICLHQPALAQTPAALQESSFWAQEVSAGNMPPVAERLPVDPLVVDLTAK
CHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHCCCCCEEEEEECC
GRTYGQQGGTLRTLISRSKDVRQMVVYGYARLVGYDHNYEIYPDILRDVEVEEGRKFTLH
CCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCEEEEE
LRRGHKWSDGQPFTSADFEYYWRHVALNKELSPSGPPQNLFVDGVLASMTFPDAHTVVIE
EECCCCCCCCCCCCCCCHHHHHHHHEECCCCCCCCCCCCEEEHHHHHHCCCCCCCEEEEE
WPTPNPGFLQLLAQASPFLIYRPAHYLKQFHADFVDKKDLRKQIKKARVRTWAALHNGLD
CCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHH
NMYKFDNPALPTLQPWINASAGKSSQRLFVRNPYYHRVDKRGVQLPYIDIVKMTVVGGGL
HHHCCCCCCCCCCHHHCCCCCCCCCCEEEEECCCHHHHHCCCCCCCHHHEEEEEEECCEE
IAAKANAGEVDLQARGLDFPDISILKKGEVDGAGYKTLLWANSTANQIAIYPNLNFADPV
EEEECCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEEECCCCCEEEEECCCCCCCHH
WREVIRDVRFRRALSMGIDRRMINRALYFGLASEGGMTALPASPFYDTANVYKWSVYYPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEECCCCCCCCCCCEEEEEEECCC
KANALLDEMGLTERTADGIRLLPDGRPMEFVIETAGERKEVENALAIITDTWREIGVKLV
CHHHHHHHCCCCCCCCCCEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
MRPLDRDILRNRVYSGLSMAAVWFGWDNGLPQPYTPPEYLAPKHQEFFAWPKWGQYYQTG
HHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCHHHCCCCCHHHCCCCCCCHHHHCC
GEVGEAPDMPAPKRLMQLSYDWSHTTDPALRSEIWREMLAIHADNQFGIGILAQAPQPIV
CCCCCCCCCCCCHHHHEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEE
VSERLRNVPETGKWAWDPGAHFGIHRIDEFYYEDAFQQFTQ
HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MYRFLSALIVIICLHQPALAQTPAALQESSFWAQEVSAGNMPPVAERLPVDPLVVDLTAK
CHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHCCCCCEEEEEECC
GRTYGQQGGTLRTLISRSKDVRQMVVYGYARLVGYDHNYEIYPDILRDVEVEEGRKFTLH
CCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCEEEEE
LRRGHKWSDGQPFTSADFEYYWRHVALNKELSPSGPPQNLFVDGVLASMTFPDAHTVVIE
EECCCCCCCCCCCCCCCHHHHHHHHEECCCCCCCCCCCCEEEHHHHHHCCCCCCCEEEEE
WPTPNPGFLQLLAQASPFLIYRPAHYLKQFHADFVDKKDLRKQIKKARVRTWAALHNGLD
CCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHH
NMYKFDNPALPTLQPWINASAGKSSQRLFVRNPYYHRVDKRGVQLPYIDIVKMTVVGGGL
HHHCCCCCCCCCCHHHCCCCCCCCCCEEEEECCCHHHHHCCCCCCCHHHEEEEEEECCEE
IAAKANAGEVDLQARGLDFPDISILKKGEVDGAGYKTLLWANSTANQIAIYPNLNFADPV
EEEECCCCCEEEEECCCCCCCCCEEECCCCCCCCCEEEEEECCCCCEEEEECCCCCCCHH
WREVIRDVRFRRALSMGIDRRMINRALYFGLASEGGMTALPASPFYDTANVYKWSVYYPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEECCCCCCCCCCCEEEEEEECCC
KANALLDEMGLTERTADGIRLLPDGRPMEFVIETAGERKEVENALAIITDTWREIGVKLV
CHHHHHHHCCCCCCCCCCEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
MRPLDRDILRNRVYSGLSMAAVWFGWDNGLPQPYTPPEYLAPKHQEFFAWPKWGQYYQTG
HHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCHHHCCCCCHHHCCCCCCCHHHHCC
GEVGEAPDMPAPKRLMQLSYDWSHTTDPALRSEIWREMLAIHADNQFGIGILAQAPQPIV
CCCCCCCCCCCCHHHHEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEE
VSERLRNVPETGKWAWDPGAHFGIHRIDEFYYEDAFQQFTQ
HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9791127; 11481431 [H]