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The map label for this gene is potD [C]

Identifier: 110678400

GI number: 110678400

Start: 1019553

End: 1020578

Strand: Direct

Name: potD [C]

Synonym: RD1_1059

Alternate gene names: 110678400

Gene position: 1019553-1020578 (Clockwise)

Preceding gene: 110678399

Following gene: 110678401

Centisome position: 24.67

GC content: 56.24

Gene sequence:

>1026_bases
ATGAAAAAAATCACAACCACACTGGCGGGCTCCATGATTGCGCTGTCCGCGTCGCTGAGTGCGGCGCATGCCGACAAGCT
GACGTTTTATTGCAGCGCGCAGGAAGAATGGTGCCAGCTCATGGCGCGCAGTTTCGAGGATGAGACCGGCATTGACGTCA
ACATGACGCGCAAGTCTTCGGGGGAAACCTTTGCGCAGATCCGGGCGGAATCCTCCAACCCCAAAGGCGACGTCTGGTGG
GGTGGCACGGGCGATCCGCATCTTCAGGCCGCTGAGGAAGGGCTGACCATGGCCTATATTTCGCCAATGCGCGACCAGTT
ACACGACTGGGCGATCAGTCAGGCCGAAAGCGCGGATAACAAGACCATCGGCATCTATTCCGGTGCGCTTGGCTATGGGT
ACAACACCGATCTGATCGCGGCGAACAACCTGCCGGAACCCGCGTGCTGGAAGGATTTGCTGAAGCCCGAATACAAGGGC
CACGTGCAGATGGCGAACCCGAATTCTTCTGGGACGGCTTACACGACACTGGCCTCGATGGTTCAGATTTTCGGCGAGGA
TGAGGGTTTTGAGTTCATGAAGGGACTTCATGCCAATGTGAACCAATATACCAAATCCGGTTCCGCCCCGATCAAGGCGG
CAGGACGTGGTGAGAACACAATCGGTATCGTTTTCATGCATGATGCAGTCAAGCAGGCCGTCTCCGGCTTCCCGATCAAG
GTTGTCGCCCCTTGCGAAGGCACAGGGTACGAGATCGGGTCCATGTCGATCATTGATGGCTCCCGCAACCTCGAAGAAGC
CAAGAAGTTCTATGACTGGGCGTTGAGCGCTGAGGCGCAGAACCTTGCCTTGCAGGTTGATGCCTTTCAGGTGCCATCCA
ACAAGAATGCGCAAACGTCCGAAAGCGCGCCTGACATGAGCACGATCAAGCTGATTGATTACGACTTCAAGAAGTACGGC
TCATCCGATGAACGCAAGCGGCTGCTGCAAAAGTGGGACGAAGAGGTCTCTGTTCTCGCGCAGTAA

Upstream 100 bases:

>100_bases
AGAGGTGAAGATGACGCAAAGGCTGCGGGATTTAACCCGGAGGCTTGGCAGATCAGAACCGGAAAAACCGGAGATCGAGA
ATAAACCGGGAGGAAACGAT

Downstream 100 bases:

>100_bases
TCCGTGCGTAACGCCACATCCGAACGGACCACACATCCGGTTTTGACCTTCTGGGTCATTGCCGGGTGGGTCGGGTTTTG
TCTTCTGCCATGGTATATGG

Product: iron ABC transporter iron-binding protein, putative

Products: phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MKKITTTLAGSMIALSASLSAAHADKLTFYCSAQEEWCQLMARSFEDETGIDVNMTRKSSGETFAQIRAESSNPKGDVWW
GGTGDPHLQAAEEGLTMAYISPMRDQLHDWAISQAESADNKTIGIYSGALGYGYNTDLIAANNLPEPACWKDLLKPEYKG
HVQMANPNSSGTAYTTLASMVQIFGEDEGFEFMKGLHANVNQYTKSGSAPIKAAGRGENTIGIVFMHDAVKQAVSGFPIK
VVAPCEGTGYEIGSMSIIDGSRNLEEAKKFYDWALSAEAQNLALQVDAFQVPSNKNAQTSESAPDMSTIKLIDYDFKKYG
SSDERKRLLQKWDEEVSVLAQ

Sequences:

>Translated_341_residues
MKKITTTLAGSMIALSASLSAAHADKLTFYCSAQEEWCQLMARSFEDETGIDVNMTRKSSGETFAQIRAESSNPKGDVWW
GGTGDPHLQAAEEGLTMAYISPMRDQLHDWAISQAESADNKTIGIYSGALGYGYNTDLIAANNLPEPACWKDLLKPEYKG
HVQMANPNSSGTAYTTLASMVQIFGEDEGFEFMKGLHANVNQYTKSGSAPIKAAGRGENTIGIVFMHDAVKQAVSGFPIK
VVAPCEGTGYEIGSMSIIDGSRNLEEAKKFYDWALSAEAQNLALQVDAFQVPSNKNAQTSESAPDMSTIKLIDYDFKKYG
SSDERKRLLQKWDEEVSVLAQ
>Mature_341_residues
MKKITTTLAGSMIALSASLSAAHADKLTFYCSAQEEWCQLMARSFEDETGIDVNMTRKSSGETFAQIRAESSNPKGDVWW
GGTGDPHLQAAEEGLTMAYISPMRDQLHDWAISQAESADNKTIGIYSGALGYGYNTDLIAANNLPEPACWKDLLKPEYKG
HVQMANPNSSGTAYTTLASMVQIFGEDEGFEFMKGLHANVNQYTKSGSAPIKAAGRGENTIGIVFMHDAVKQAVSGFPIK
VVAPCEGTGYEIGSMSIIDGSRNLEEAKKFYDWALSAEAQNLALQVDAFQVPSNKNAQTSESAPDMSTIKLIDYDFKKYG
SSDERKRLLQKWDEEVSVLAQ

Specific function: Required For The Activity Of The Bacterial Periplasmic Transport System Of Putrescine And Spermidine. Polyamine Binding Protein. [C]

COG id: COG1840

COG function: function code P; ABC-type Fe3+ transport system, periplasmic component

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 1040 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 260 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 460 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Stationary Phase,

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 37179; Mature: 37179

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKITTTLAGSMIALSASLSAAHADKLTFYCSAQEEWCQLMARSFEDETGIDVNMTRKSS
CCCCHHHHHCCHHEEEHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEEECCCC
GETFAQIRAESSNPKGDVWWGGTGDPHLQAAEEGLTMAYISPMRDQLHDWAISQAESADN
CCEEEEEEECCCCCCCCEEECCCCCCCHHHHHCCCEEEEHHHHHHHHHHHHHHHHCCCCC
KTIGIYSGALGYGYNTDLIAANNLPEPACWKDLLKPEYKGHVQMANPNSSGTAYTTLASM
CEEEEEECCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHH
VQIFGEDEGFEFMKGLHANVNQYTKSGSAPIKAAGRGENTIGIVFMHDAVKQAVSGFPIK
HHHHCCCCCHHHHHHHHCCHHHHHCCCCCCEEECCCCCCEEEEEEEHHHHHHHHCCCCEE
VVAPCEGTGYEIGSMSIIDGSRNLEEAKKFYDWALSAEAQNLALQVDAFQVPSNKNAQTS
EEECCCCCCEECCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCC
ESAPDMSTIKLIDYDFKKYGSSDERKRLLQKWDEEVSVLAQ
CCCCCCEEEEEEECHHHHHCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKKITTTLAGSMIALSASLSAAHADKLTFYCSAQEEWCQLMARSFEDETGIDVNMTRKSS
CCCCHHHHHCCHHEEEHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEEECCCC
GETFAQIRAESSNPKGDVWWGGTGDPHLQAAEEGLTMAYISPMRDQLHDWAISQAESADN
CCEEEEEEECCCCCCCCEEECCCCCCCHHHHHCCCEEEEHHHHHHHHHHHHHHHHCCCCC
KTIGIYSGALGYGYNTDLIAANNLPEPACWKDLLKPEYKGHVQMANPNSSGTAYTTLASM
CEEEEEECCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHH
VQIFGEDEGFEFMKGLHANVNQYTKSGSAPIKAAGRGENTIGIVFMHDAVKQAVSGFPIK
HHHHCCCCCHHHHHHHHCCHHHHHCCCCCCEEECCCCCCEEEEEEEHHHHHHHHCCCCEE
VVAPCEGTGYEIGSMSIIDGSRNLEEAKKFYDWALSAEAQNLALQVDAFQVPSNKNAQTS
EEECCCCCCEECCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCC
ESAPDMSTIKLIDYDFKKYGSSDERKRLLQKWDEEVSVLAQ
CCCCCCEEEEEEECHHHHHCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]