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The map label for this gene is yhcB [H]

Identifier: 110678378

GI number: 110678378

Start: 1001879

End: 1002481

Strand: Direct

Name: yhcB [H]

Synonym: RD1_1035

Alternate gene names: 110678378

Gene position: 1001879-1002481 (Clockwise)

Preceding gene: 110678377

Following gene: 110678380

Centisome position: 24.24

GC content: 60.36

Gene sequence:

>603_bases
ATGGGAGAGGCAGGTATCGAAGTGGCCGTGGCTTATTTCTCTGGTGAGGGACATACGCGTCGTCTGGCCGAGGGTGTCGC
GGCCGGGGCGCAGGAGGCGCAGGCGCGTGCTGTTTTGATTGATGTTGAGGATCTTTGTCAGGTGGACTGGCAACGCCTGC
ATGATGCGTCCGCGATTGTCTTTGGCGCGCCCACGTATATGGGCAGCGCCGCCGCACCGTTTAAGGCATTCATGGATGCG
ACCAGTAATTTTTGGCTCGACGGGCTATGGGCCGATAAAATTGCCGCTGGGTTCACCGTAGGATCGGCGGCAAGCGGCGA
TAAATCAAACACGCTCCTATCCTTCGTAACGCTGGCCGCTCAGCACGGGATGATATGGGTGGGCCAAAGTGAGATCGGCC
CACCTGCGCGTCCAGACAACGCAGGCATAAACCAGGATGGGTTCTGGCTCGGGCTTGCGGCGACGTCGTCGCGTGACAAA
TTGGTACTGATAGAGCAGCCGGGTATGGAAACGGCGCGGCGATTTGGGTGTCGCATCGGCAGGGCTGCGCAGCGTTGGCA
CCAGTGCCCTGAAGCTGTGTCGCCCCAGCGCGTCACGCGATAA

Upstream 100 bases:

>100_bases
GTATCCACCGCCAGTACCTTGCACGCCTGCCAGGCGTCGCGCAGATGCAGTCGAGCTTTGCGCTCAGGACGGTGTTCAAA
ACCACTGCGTTGCCGGTCTG

Downstream 100 bases:

>100_bases
ACCTGAAACACGTATTGCTGTGTGAGATCAAGGATTTCAACGCGTTACGTGACACCTGATGTTTCAGATTTTTCGTCAGA
CGCTCTAGCACCCTTCCAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 199

Protein sequence:

>200_residues
MGEAGIEVAVAYFSGEGHTRRLAEGVAAGAQEAQARAVLIDVEDLCQVDWQRLHDASAIVFGAPTYMGSAAAPFKAFMDA
TSNFWLDGLWADKIAAGFTVGSAASGDKSNTLLSFVTLAAQHGMIWVGQSEIGPPARPDNAGINQDGFWLGLAATSSRDK
LVLIEQPGMETARRFGCRIGRAAQRWHQCPEAVSPQRVTR

Sequences:

>Translated_200_residues
MGEAGIEVAVAYFSGEGHTRRLAEGVAAGAQEAQARAVLIDVEDLCQVDWQRLHDASAIVFGAPTYMGSAAAPFKAFMDA
TSNFWLDGLWADKIAAGFTVGSAASGDKSNTLLSFVTLAAQHGMIWVGQSEIGPPARPDNAGINQDGFWLGLAATSSRDK
LVLIEQPGMETARRFGCRIGRAAQRWHQCPEAVSPQRVTR
>Mature_199_residues
GEAGIEVAVAYFSGEGHTRRLAEGVAAGAQEAQARAVLIDVEDLCQVDWQRLHDASAIVFGAPTYMGSAAAPFKAFMDAT
SNFWLDGLWADKIAAGFTVGSAASGDKSNTLLSFVTLAAQHGMIWVGQSEIGPPARPDNAGINQDGFWLGLAATSSRDKL
VLIEQPGMETARRFGCRIGRAAQRWHQCPEAVSPQRVTR

Specific function: Seems To Enhance The Formation And/Or Stability Of Noncovalent Complexes Between The Trp Repressor Protein And Operator-Bearing DNA. However, Wrba Does Not Specifically Influence The Affinity Or Mode Of Binding Of Trpr To Its Operator. It Seems Possible T

COG id: COG0655

COG function: function code R; Multimeric flavodoxin WrbA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 flavodoxin-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008254 [H]

Pfam domain/function: PF00258 Flavodoxin_1 [H]

EC number: NA

Molecular weight: Translated: 21320; Mature: 21189

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: PS50902 FLAVODOXIN_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGEAGIEVAVAYFSGEGHTRRLAEGVAAGAQEAQARAVLIDVEDLCQVDWQRLHDASAIV
CCCCCEEEEEEEECCCCCHHHHHHHHHCCCHHHCCEEEEEEHHHHHHHHHHHHHCCCEEE
FGAPTYMGSAAAPFKAFMDATSNFWLDGLWADKIAAGFTVGSAASGDKSNTLLSFVTLAA
EECCHHCCCCCCHHHHHHHCCCCCEECCEEHHHHHHCCEECCCCCCCCCHHHHHHHHHHH
QHGMIWVGQSEIGPPARPDNAGINQDGFWLGLAATSSRDKLVLIEQPGMETARRFGCRIG
HCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCHHHHHHHHHHHH
RAAQRWHQCPEAVSPQRVTR
HHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
GEAGIEVAVAYFSGEGHTRRLAEGVAAGAQEAQARAVLIDVEDLCQVDWQRLHDASAIV
CCCCEEEEEEEECCCCCHHHHHHHHHCCCHHHCCEEEEEEHHHHHHHHHHHHHCCCEEE
FGAPTYMGSAAAPFKAFMDATSNFWLDGLWADKIAAGFTVGSAASGDKSNTLLSFVTLAA
EECCHHCCCCCCHHHHHHHCCCCCEECCEEHHHHHHCCEECCCCCCCCCHHHHHHHHHHH
QHGMIWVGQSEIGPPARPDNAGINQDGFWLGLAATSSRDKLVLIEQPGMETARRFGCRIG
HCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCHHHHHHHHHHHH
RAAQRWHQCPEAVSPQRVTR
HHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]