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The map label for this gene is 110678365

Identifier: 110678365

GI number: 110678365

Start: 986461

End: 989160

Strand: Direct

Name: 110678365

Synonym: RD1_1021

Alternate gene names: NA

Gene position: 986461-989160 (Clockwise)

Preceding gene: 110678364

Following gene: 110678366

Centisome position: 23.87

GC content: 59.85

Gene sequence:

>2700_bases
ATGTCTGAGAACAATATACTTGCAGAGCGCTGCGTAGAGGTGTCGCAACTGACACGCGACGCACTGGCCTGGGTCAACCA
CGCAGAAAACGCCGAAACTGTAGGGCCGCGGCACAAGAGCCTGACCAAGCTGCTGCGCAAGAGCGCGCGGCGCGCCGAAC
GGCTGGGCAAATCGGCCCGCACCAATATGTCGGTGAGCGTTTTCGGTCCCTCGCAGGCGGGTAAATCCTTTCTGGTGTCG
GTGTTGGCGCGACCTTCTGACGGGCGGCTTACGGCGGATTTCAACGGCCCCGGCGGGCAACTTGATTACATCTCTCAGGT
GAACCCGGCAGGGGATGGGGAATCCACCGGTCTGGTCACACGGTTCACGATGACCAAGGCCGCAACACCCGATGGATTTC
CGATCCAGCTGAACCTGTTGTCCGAGGCCGATATCGCGCGCACGATCATCAACAGTTTTTACGAGGATGGCGATCAGTCC
GAGACGCCGCCCGAACCCGAAGACCTCAAGGCGCATTTTGCTGCCCATGCAGGCAAGGCCGGGGCGGGTGAGGTGCCGGG
CCTGTCGTTCGAAGAGGTCTATGAAATCGCCGAATACGTCGAAAACACATTCGGCAAGGTCGCCTATGCCAGCCATCTGC
GCGGGTTCTGGGATGAGGCGGCGAGCCTTGCGCCCAATATGTCGATCAAGGACCGTGGCGATTTTCTGTCGATCCTCTGG
GGTGGGTATCAGCCACTGACGGACCTTTATGTCAAACTGTCCTCGGCCCTGACGCTGATCGACAACGCCGAAGAGGTCTA
CGCCCCGCTTGAGGCGCTGCAACCGCGCGAGACGTCGATCATTGACGTCAACACGCTCGGCGGGCTCTTCGGGCCTGAAA
ACGAGGACACGCTGCCGATCCGCACGCCTTCGGGCAAAGTGGCGCAGATGAACCGCGCGGTGGTCTGTGCGCTTGCGGCC
GAACTGGTCTTTCCGATGGCGGAGCAGCCGTCAGATTTCTTTGCCGAAACGGACCTGCTGGATTTTCCGGGGGCGCGCAA
CCGCTTTGAATTGCCGCTGACCAAGACGCTGGAAAACCCCGAAGAGGGCGTGACAAATATGCTGTTGCGCGGCAAGGTCG
CTTATCTCTTTGACCGCTACGTGGCAAATCAGGAAATCACCTCCATGCTGCTCTGCGTGCCCGACAGCAATATGGACACG
GTCAGCCTGCCGGGGCTGGTCGAAAACTGGATCTCCATGACTCATGGGGCCACGCCGCAGGAACGGGCCAAGAACGACTG
CATCCTGTTTTTTGTCATGACCAAGTTTGACAAACATCTGGGTGAAAGCGCGTCGGGCGGTTCTTCGACCGAACGCTTCG
AGCGGCGGATGGATGCCTCCCTGCTCAAGGCGTTTGGCAAATTACGCGACAGTTGGGTGCATAAATGGACGCCCAGCCAG
CCGTTCCAGAACTGCTACTGGCTGCGTAATCCGAACTATTTCGTCGAAGGTCTGATCAATTACAATGAGGATGAGACGGA
AAAGGAAATCCGCGCGGAAAAACTGGATCGGGTGGCGGAGCTCAAGGAAGGGTGTCTGTCCACGGATGCGGTGCGCGCGC
ATTTCAAGGAGCCGGAAGTCGCTTGGGACGCGGCCCTGACCCTGAATGATGGGGGTGTGGGCTATCTGACGCAGGAGTTG
ACGAAGGTTTGCAAGCCGGAAAGCAAGATGGGCCAAATCTCGGCCCAGTTGGACAAGATGACCAACGACGTTCTGGGGGA
ATTGCGCGATCTCTATGTGTCTGACGATATCGAAACGCGGATCGAAGAAAAGCGCGAAGCTGCCGCGCAGATCATCGACT
GCCTTGAGCTGACGCTGCAAAGTCACCGTTTCGGGGCCTTCATAAACGCGCTTTGTGTGGATCAGGACGCGATCGAGGAC
CGGATCAGCCGGGTGCCAAGCTCCATCCGGATCAGTCAGGCGGTGGGTTCTTCCGCGATGGAAAGCACATCCAGCGGCGG
GGCTGCATCCCCGCCACGCCCCGGTGGCGCATCACGCCCCTCGCGCCCCGGAAGGCCAAACCGCCCGGGCAAACCGGCGC
CCGCAGCCGCTGAGGCCGAGACCGATGTAACCGCCAAGACAGCGTCGCTGATCCGCACCATGTCGTCAGAGGATTTTCAG
GCCAACACCGCCATTGATATCTGGATCGAACATCTGAGCCAGTTGCGCGAGGATGCAGACCGCTTGGCGACCTTCAGCCT
GACGCCTGAGGCGGCGGCAGATCTGGTGCGCGAACTGGTGCACGGCTTCCGGCGCACCGATGTTGCATCGGAGATGAAAA
CCCTGCTCAAGGCGATTGACTACGGGCTGACTGTTGACAAACAGGCACCACCCGCCGCCATCGTCTGCGCCGAGACGATC
AATAGTTTCGTACATTCCCTGGGTGCGGAAAAGCTGTCGGACAAGGACCGACCGGTGATCGAATTGCAGGACGGCCACAA
CCGGATGGCATTTGAGGCGCGCCCGGCCTCCGATACGGCGTTTGATCTGCCGCAGGAACAACGCGCTGCCGCCGAAGACT
TCTGGACGGATTGGGTCTATATGCTGGAAGCGCTGTTTGTCGGAAACGCCAAAGACGGCGACGCGGGCGAAATCAACATC
GAGCAGAACATGGCCATCGGGCGCGTGGTCAATGGGCTTGATGCTGAACAGGCCGCGTAA

Upstream 100 bases:

>100_bases
GGTTCTGAAACTGCAAACCCTCGGCTTTGACGATGACTATTGGATCGATACCGGGGTCTACAGAATATGAGAATGTGCAA
GCTTGAAATGGTGCGGTGCG

Downstream 100 bases:

>100_bases
GGGTCGAAGATTGCGAGAGAGGTAAAGCGGTGATTTCAGTCAAACCCGATCCGGCGCACCCCCGTGGGGGCCATGCGGAG
CTTTCGGTGCCAGAGGACAA

Product: hypothetical protein

Products: NA

Alternate protein names: Virulence Factor SrfC-Like Protein; Virulence Effector SrfC; Virulence Factor SrfC; Virulence Protein; Virulence Factor Protein; Protein Conserved In Bacteria Virulence Factor; Virulence Effector Protein; Type III Effector Protein; Protein Virulence Factor-Like Protein; Type III Secretion System Effector; HopL1 Protein

Number of amino acids: Translated: 899; Mature: 898

Protein sequence:

>899_residues
MSENNILAERCVEVSQLTRDALAWVNHAENAETVGPRHKSLTKLLRKSARRAERLGKSARTNMSVSVFGPSQAGKSFLVS
VLARPSDGRLTADFNGPGGQLDYISQVNPAGDGESTGLVTRFTMTKAATPDGFPIQLNLLSEADIARTIINSFYEDGDQS
ETPPEPEDLKAHFAAHAGKAGAGEVPGLSFEEVYEIAEYVENTFGKVAYASHLRGFWDEAASLAPNMSIKDRGDFLSILW
GGYQPLTDLYVKLSSALTLIDNAEEVYAPLEALQPRETSIIDVNTLGGLFGPENEDTLPIRTPSGKVAQMNRAVVCALAA
ELVFPMAEQPSDFFAETDLLDFPGARNRFELPLTKTLENPEEGVTNMLLRGKVAYLFDRYVANQEITSMLLCVPDSNMDT
VSLPGLVENWISMTHGATPQERAKNDCILFFVMTKFDKHLGESASGGSSTERFERRMDASLLKAFGKLRDSWVHKWTPSQ
PFQNCYWLRNPNYFVEGLINYNEDETEKEIRAEKLDRVAELKEGCLSTDAVRAHFKEPEVAWDAALTLNDGGVGYLTQEL
TKVCKPESKMGQISAQLDKMTNDVLGELRDLYVSDDIETRIEEKREAAAQIIDCLELTLQSHRFGAFINALCVDQDAIED
RISRVPSSIRISQAVGSSAMESTSSGGAASPPRPGGASRPSRPGRPNRPGKPAPAAAEAETDVTAKTASLIRTMSSEDFQ
ANTAIDIWIEHLSQLREDADRLATFSLTPEAAADLVRELVHGFRRTDVASEMKTLLKAIDYGLTVDKQAPPAAIVCAETI
NSFVHSLGAEKLSDKDRPVIELQDGHNRMAFEARPASDTAFDLPQEQRAAAEDFWTDWVYMLEALFVGNAKDGDAGEINI
EQNMAIGRVVNGLDAEQAA

Sequences:

>Translated_899_residues
MSENNILAERCVEVSQLTRDALAWVNHAENAETVGPRHKSLTKLLRKSARRAERLGKSARTNMSVSVFGPSQAGKSFLVS
VLARPSDGRLTADFNGPGGQLDYISQVNPAGDGESTGLVTRFTMTKAATPDGFPIQLNLLSEADIARTIINSFYEDGDQS
ETPPEPEDLKAHFAAHAGKAGAGEVPGLSFEEVYEIAEYVENTFGKVAYASHLRGFWDEAASLAPNMSIKDRGDFLSILW
GGYQPLTDLYVKLSSALTLIDNAEEVYAPLEALQPRETSIIDVNTLGGLFGPENEDTLPIRTPSGKVAQMNRAVVCALAA
ELVFPMAEQPSDFFAETDLLDFPGARNRFELPLTKTLENPEEGVTNMLLRGKVAYLFDRYVANQEITSMLLCVPDSNMDT
VSLPGLVENWISMTHGATPQERAKNDCILFFVMTKFDKHLGESASGGSSTERFERRMDASLLKAFGKLRDSWVHKWTPSQ
PFQNCYWLRNPNYFVEGLINYNEDETEKEIRAEKLDRVAELKEGCLSTDAVRAHFKEPEVAWDAALTLNDGGVGYLTQEL
TKVCKPESKMGQISAQLDKMTNDVLGELRDLYVSDDIETRIEEKREAAAQIIDCLELTLQSHRFGAFINALCVDQDAIED
RISRVPSSIRISQAVGSSAMESTSSGGAASPPRPGGASRPSRPGRPNRPGKPAPAAAEAETDVTAKTASLIRTMSSEDFQ
ANTAIDIWIEHLSQLREDADRLATFSLTPEAAADLVRELVHGFRRTDVASEMKTLLKAIDYGLTVDKQAPPAAIVCAETI
NSFVHSLGAEKLSDKDRPVIELQDGHNRMAFEARPASDTAFDLPQEQRAAAEDFWTDWVYMLEALFVGNAKDGDAGEINI
EQNMAIGRVVNGLDAEQAA
>Mature_898_residues
SENNILAERCVEVSQLTRDALAWVNHAENAETVGPRHKSLTKLLRKSARRAERLGKSARTNMSVSVFGPSQAGKSFLVSV
LARPSDGRLTADFNGPGGQLDYISQVNPAGDGESTGLVTRFTMTKAATPDGFPIQLNLLSEADIARTIINSFYEDGDQSE
TPPEPEDLKAHFAAHAGKAGAGEVPGLSFEEVYEIAEYVENTFGKVAYASHLRGFWDEAASLAPNMSIKDRGDFLSILWG
GYQPLTDLYVKLSSALTLIDNAEEVYAPLEALQPRETSIIDVNTLGGLFGPENEDTLPIRTPSGKVAQMNRAVVCALAAE
LVFPMAEQPSDFFAETDLLDFPGARNRFELPLTKTLENPEEGVTNMLLRGKVAYLFDRYVANQEITSMLLCVPDSNMDTV
SLPGLVENWISMTHGATPQERAKNDCILFFVMTKFDKHLGESASGGSSTERFERRMDASLLKAFGKLRDSWVHKWTPSQP
FQNCYWLRNPNYFVEGLINYNEDETEKEIRAEKLDRVAELKEGCLSTDAVRAHFKEPEVAWDAALTLNDGGVGYLTQELT
KVCKPESKMGQISAQLDKMTNDVLGELRDLYVSDDIETRIEEKREAAAQIIDCLELTLQSHRFGAFINALCVDQDAIEDR
ISRVPSSIRISQAVGSSAMESTSSGGAASPPRPGGASRPSRPGRPNRPGKPAPAAAEAETDVTAKTASLIRTMSSEDFQA
NTAIDIWIEHLSQLREDADRLATFSLTPEAAADLVRELVHGFRRTDVASEMKTLLKAIDYGLTVDKQAPPAAIVCAETIN
SFVHSLGAEKLSDKDRPVIELQDGHNRMAFEARPASDTAFDLPQEQRAAAEDFWTDWVYMLEALFVGNAKDGDAGEINIE
QNMAIGRVVNGLDAEQAA

Specific function: Unknown

COG id: COG4458

COG function: function code S; Uncharacterized protein conserved in bacteria, putative virulence factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 98518; Mature: 98387

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSENNILAERCVEVSQLTRDALAWVNHAENAETVGPRHKSLTKLLRKSARRAERLGKSAR
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHH
TNMSVSVFGPSQAGKSFLVSVLARPSDGRLTADFNGPGGQLDYISQVNPAGDGESTGLVT
CCCEEEEECCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHCCCCCCCCCCCCEEE
RFTMTKAATPDGFPIQLNLLSEADIARTIINSFYEDGDQSETPPEPEDLKAHFAAHAGKA
EEEEHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCC
GAGEVPGLSFEEVYEIAEYVENTFGKVAYASHLRGFWDEAASLAPNMSIKDRGDFLSILW
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
GGYQPLTDLYVKLSSALTLIDNAEEVYAPLEALQPRETSIIDVNTLGGLFGPENEDTLPI
CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEEEEHHHCCCCCCCCCCEEEE
RTPSGKVAQMNRAVVCALAAELVFPMAEQPSDFFAETDLLDFPGARNRFELPLTKTLENP
ECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCEEECCHHHHCCCH
EEGVTNMLLRGKVAYLFDRYVANQEITSMLLCVPDSNMDTVSLPGLVENWISMTHGATPQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCEECCHHHHHHHHHHCCCCCH
ERAKNDCILFFVMTKFDKHLGESASGGSSTERFERRMDASLLKAFGKLRDSWVHKWTPSQ
HHCCCCEEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PFQNCYWLRNPNYFVEGLINYNEDETEKEIRAEKLDRVAELKEGCLSTDAVRAHFKEPEV
CHHCEEEECCCCCEEHEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCC
AWDAALTLNDGGVGYLTQELTKVCKPESKMGQISAQLDKMTNDVLGELRDLYVSDDIETR
EEEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
IEEKREAAAQIIDCLELTLQSHRFGAFINALCVDQDAIEDRISRVPSSIRISQAVGSSAM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHCCHHH
ESTSSGGAASPPRPGGASRPSRPGRPNRPGKPAPAAAEAETDVTAKTASLIRTMSSEDFQ
HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
ANTAIDIWIEHLSQLREDADRLATFSLTPEAAADLVRELVHGFRRTDVASEMKTLLKAID
CCHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YGLTVDKQAPPAAIVCAETINSFVHSLGAEKLSDKDRPVIELQDGHNRMAFEARPASDTA
CCCEECCCCCCHHHHHHHHHHHHHHHHCHHHCCCCCCCEEEEECCCCEEEEECCCCCCCC
FDLPQEQRAAAEDFWTDWVYMLEALFVGNAKDGDAGEINIEQNMAIGRVVNGLDAEQAA
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHCHHHHHHHCCCCHHCCC
>Mature Secondary Structure 
SENNILAERCVEVSQLTRDALAWVNHAENAETVGPRHKSLTKLLRKSARRAERLGKSAR
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHH
TNMSVSVFGPSQAGKSFLVSVLARPSDGRLTADFNGPGGQLDYISQVNPAGDGESTGLVT
CCCEEEEECCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHCCCCCCCCCCCCEEE
RFTMTKAATPDGFPIQLNLLSEADIARTIINSFYEDGDQSETPPEPEDLKAHFAAHAGKA
EEEEHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCC
GAGEVPGLSFEEVYEIAEYVENTFGKVAYASHLRGFWDEAASLAPNMSIKDRGDFLSILW
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
GGYQPLTDLYVKLSSALTLIDNAEEVYAPLEALQPRETSIIDVNTLGGLFGPENEDTLPI
CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEEEEHHHCCCCCCCCCCEEEE
RTPSGKVAQMNRAVVCALAAELVFPMAEQPSDFFAETDLLDFPGARNRFELPLTKTLENP
ECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCEEECCHHHHCCCH
EEGVTNMLLRGKVAYLFDRYVANQEITSMLLCVPDSNMDTVSLPGLVENWISMTHGATPQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCEECCHHHHHHHHHHCCCCCH
ERAKNDCILFFVMTKFDKHLGESASGGSSTERFERRMDASLLKAFGKLRDSWVHKWTPSQ
HHCCCCEEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PFQNCYWLRNPNYFVEGLINYNEDETEKEIRAEKLDRVAELKEGCLSTDAVRAHFKEPEV
CHHCEEEECCCCCEEHEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCC
AWDAALTLNDGGVGYLTQELTKVCKPESKMGQISAQLDKMTNDVLGELRDLYVSDDIETR
EEEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
IEEKREAAAQIIDCLELTLQSHRFGAFINALCVDQDAIEDRISRVPSSIRISQAVGSSAM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHCCHHH
ESTSSGGAASPPRPGGASRPSRPGRPNRPGKPAPAAAEAETDVTAKTASLIRTMSSEDFQ
HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
ANTAIDIWIEHLSQLREDADRLATFSLTPEAAADLVRELVHGFRRTDVASEMKTLLKAID
CCHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YGLTVDKQAPPAAIVCAETINSFVHSLGAEKLSDKDRPVIELQDGHNRMAFEARPASDTA
CCCEECCCCCCHHHHHHHHHHHHHHHHCHHHCCCCCCCEEEEECCCCEEEEECCCCCCCC
FDLPQEQRAAAEDFWTDWVYMLEALFVGNAKDGDAGEINIEQNMAIGRVVNGLDAEQAA
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHCHHHHHHHCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA