| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is 110678339
Identifier: 110678339
GI number: 110678339
Start: 959637
End: 959963
Strand: Reverse
Name: 110678339
Synonym: RD1_0995
Alternate gene names: NA
Gene position: 959963-959637 (Counterclockwise)
Preceding gene: 110678342
Following gene: 110678336
Centisome position: 23.23
GC content: 55.66
Gene sequence:
>327_bases ATGCCCAAGGAAGAATGGGGAACGAAACGCCTCTGCCCGACCACCGGCAAACGTTTCTACGATCTGAACGCCAGTCCGAT CATCAGCCCCTATACTGGTGAAGTGGTCGAAGTGGACCTGAGCAAGTCACGCATGATCGCAGCAGACGCCGAAGACGCTG CATCCGCCAAAGCGAAAGAAGCCGATACCGAAGAAGAAGCGGTACTGGACGATGATGACGTGGATGTGGATCTCGACGAT GATCTGCTGGATGATGACGACGATGACACGGACAGCGTTCCGCTTGAGGAAATCGCTGACGTTGCGGCGGACGACGACGA TAACTGA
Upstream 100 bases:
>100_bases CGGGCTGTGCCACACGCGGCAGGTCTTTACAGACCCCGCCTCATATGGCACTTGCGCTCCAATCATCTACACCTTAACCG CAAATTCAAAGGGGGTTTTC
Downstream 100 bases:
>100_bases CCCAATTGCGCAGCGGGTTCGCTTTTACTCTTGATCCCGCTTCGCACTGCCGCTATCCAGCGGCGCAATGGGGCCTTAGC TCAGCTGGGAGAGCGCCTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 108; Mature: 107
Protein sequence:
>108_residues MPKEEWGTKRLCPTTGKRFYDLNASPIISPYTGEVVEVDLSKSRMIAADAEDAASAKAKEADTEEEAVLDDDDVDVDLDD DLLDDDDDDTDSVPLEEIADVAADDDDN
Sequences:
>Translated_108_residues MPKEEWGTKRLCPTTGKRFYDLNASPIISPYTGEVVEVDLSKSRMIAADAEDAASAKAKEADTEEEAVLDDDDVDVDLDD DLLDDDDDDTDSVPLEEIADVAADDDDN >Mature_107_residues PKEEWGTKRLCPTTGKRFYDLNASPIISPYTGEVVEVDLSKSRMIAADAEDAASAKAKEADTEEEAVLDDDDVDVDLDDD LLDDDDDDTDSVPLEEIADVAADDDDN
Specific function: Unknown
COG id: COG4530
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 11782; Mature: 11651
Theoretical pI: Translated: 3.50; Mature: 3.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKEEWGTKRLCPTTGKRFYDLNASPIISPYTGEVVEVDLSKSRMIAADAEDAASAKAKE CCCCCCCCCCCCCCCCCEEEECCCCCEECCCCCCEEEEECCCCEEEEECCCHHHHCCCCC ADTEEEAVLDDDDVDVDLDDDLLDDDDDDTDSVPLEEIADVAADDDDN CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC >Mature Secondary Structure PKEEWGTKRLCPTTGKRFYDLNASPIISPYTGEVVEVDLSKSRMIAADAEDAASAKAKE CCCCCCCCCCCCCCCCEEEECCCCCEECCCCCCEEEEECCCCEEEEECCCHHHHCCCCC ADTEEEAVLDDDDVDVDLDDDLLDDDDDDTDSVPLEEIADVAADDDDN CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA