| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is tauA [H]
Identifier: 110678328
GI number: 110678328
Start: 948318
End: 949319
Strand: Direct
Name: tauA [H]
Synonym: RD1_0982
Alternate gene names: 110678328
Gene position: 948318-949319 (Clockwise)
Preceding gene: 110678326
Following gene: 110678329
Centisome position: 22.94
GC content: 60.28
Gene sequence:
>1002_bases ATGATCAAAAGAACAGCATGTGCATTTGTAGCAGGGGCCGTCATGGCCCTGGGCGCGCAAACTGCGGCAGCAGACGGCCA TGGCGAAATCACCGTCGGCTATTTCCTTGAATGGCCCATGCCATTCCTCGCCGCCAAGGCATCGGGCGCATATGACGAGG CGCTGGGCATGAAGGTGAACTGGGTGTCTTTCGAAACCGGCACGGCGATGTCTGCGGCGATGGCGTCGGGTGATGTGCAG ATTTCCGTGTCGCAAGGTGTGCCGCCCTTCGTGGTTGCGACCTCGGGCGGGCAGGATATTCAGGTGATCGACGTCGCCGT GTCCTATTCGGAAAACGACAACTGCGTGGTTGCCGAAGCGCTGGAGATCGACAAGGACAGCGCGGGCGAGTTGGCGGGCA AGAAAGTGGCCGTGCCACTGGGGACTGCCGCGCATTATGGTTTCCTGCGTCAGATGGACCATTTCGGTGTCGATCTGGCC TCTTTGCAGATTGTCGATATGGCCCCGCCAGAAGGGGCTGCGGCACTGAGCCAGGGCGCGGTTGATTTCGCCTGCGGCTG GGGCGGTGGTCTTGCGCGTATGAAGGAATACGGCAACGTGCTGTTGACCGGTGCGGAAAAGCAGGAACTGGGCATTCTGG TATTCGATGTGACATCCGCGCCTGCGTCCTACATCGCGGAAAACAGTGAAACCGTGGCGAAATTCGCCGCCGTCACCGCC GCGGCCAACGCGGAGTGGAAAGCAAATGGCAGCGATGAGATGCTCGCCGTGATCGCGGAGCAGTCCGGTATGGACATCGA GGCTGCGCGCAGTTCGATTTCCACCTTTGAGTTCCCATCGGTCGAAGAGCAGCTTTCCGAGGCGTGGCTTGGTGGCAATG CGGCCAGCTTCATGAAGGGTGTTGCGGATGTCTTTGTCGAGGCGGGCTCCATCGATTCCGCGCTGGACAGCTACGAGGAT GCCGTGAACACCGGTCCATTGACTGCCGCGAGCAGCATGTAA
Upstream 100 bases:
>100_bases TACTGCTGTGTTCGAAAAACAAGACCGGTGGAAAACCGGGACGCACGACAAAAAACGCCGATCAAACAGGATCGGGCAAC GATCAACGGGAGAAATACGA
Downstream 100 bases:
>100_bases GACGGTTGGAAACGGCGCAGGACCAACCTGCGCCGTTTCTTTTTCGGGGGCCGCAGACAGGTCCAGGCCTGTCCGGCCGG CCGCTCTGACCAAGGGAACA
Product: taurine ABC transporter, periplasmic binding protein
Products: taurine [Cytoplasm]; ADP; phosphate [C]
Alternate protein names: Sulfate starvation-induced protein 1; SSI1 [H]
Number of amino acids: Translated: 333; Mature: 333
Protein sequence:
>333_residues MIKRTACAFVAGAVMALGAQTAAADGHGEITVGYFLEWPMPFLAAKASGAYDEALGMKVNWVSFETGTAMSAAMASGDVQ ISVSQGVPPFVVATSGGQDIQVIDVAVSYSENDNCVVAEALEIDKDSAGELAGKKVAVPLGTAAHYGFLRQMDHFGVDLA SLQIVDMAPPEGAAALSQGAVDFACGWGGGLARMKEYGNVLLTGAEKQELGILVFDVTSAPASYIAENSETVAKFAAVTA AANAEWKANGSDEMLAVIAEQSGMDIEAARSSISTFEFPSVEEQLSEAWLGGNAASFMKGVADVFVEAGSIDSALDSYED AVNTGPLTAASSM
Sequences:
>Translated_333_residues MIKRTACAFVAGAVMALGAQTAAADGHGEITVGYFLEWPMPFLAAKASGAYDEALGMKVNWVSFETGTAMSAAMASGDVQ ISVSQGVPPFVVATSGGQDIQVIDVAVSYSENDNCVVAEALEIDKDSAGELAGKKVAVPLGTAAHYGFLRQMDHFGVDLA SLQIVDMAPPEGAAALSQGAVDFACGWGGGLARMKEYGNVLLTGAEKQELGILVFDVTSAPASYIAENSETVAKFAAVTA AANAEWKANGSDEMLAVIAEQSGMDIEAARSSISTFEFPSVEEQLSEAWLGGNAASFMKGVADVFVEAGSIDSALDSYED AVNTGPLTAASSM >Mature_333_residues MIKRTACAFVAGAVMALGAQTAAADGHGEITVGYFLEWPMPFLAAKASGAYDEALGMKVNWVSFETGTAMSAAMASGDVQ ISVSQGVPPFVVATSGGQDIQVIDVAVSYSENDNCVVAEALEIDKDSAGELAGKKVAVPLGTAAHYGFLRQMDHFGVDLA SLQIVDMAPPEGAAALSQGAVDFACGWGGGLARMKEYGNVLLTGAEKQELGILVFDVTSAPASYIAENSETVAKFAAVTA AANAEWKANGSDEMLAVIAEQSGMDIEAARSSISTFEFPSVEEQLSEAWLGGNAASFMKGVADVFVEAGSIDSALDSYED AVNTGPLTAASSM
Specific function: Part of a binding-protein-dependent transport system for taurine [H]
COG id: COG4521
COG function: function code P; ABC-type taurine transport system, periplasmic component
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein ssuA/tauA family [H]
Homologues:
Organism=Escherichia coli, GI87081727, Length=289, Percent_Identity=25.6055363321799, Blast_Score=92, Evalue=7e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007210 - InterPro: IPR001638 - InterPro: IPR010068 [H]
Pfam domain/function: PF04069 OpuAC [H]
EC number: NA
Molecular weight: Translated: 34228; Mature: 34228
Theoretical pI: Translated: 3.88; Mature: 3.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKRTACAFVAGAVMALGAQTAAADGHGEITVGYFLEWPMPFLAAKASGAYDEALGMKVN CCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCHHHHHCCCCCCHHHHCCEEE WVSFETGTAMSAAMASGDVQISVSQGVPPFVVATSGGQDIQVIDVAVSYSENDNCVVAEA EEEECCCCCHHHHHCCCCEEEEECCCCCCEEEEECCCCEEEEEEEEEEECCCCCEEEEEE LEIDKDSAGELAGKKVAVPLGTAAHYGFLRQMDHFGVDLASLQIVDMAPPEGAAALSQGA EECCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHCCC VDFACGWGGGLARMKEYGNVLLTGAEKQELGILVFDVTSAPASYIAENSETVAKFAAVTA EEEEECCCCHHHHHHHCCCEEEECCCCCCCCEEEEEECCCCHHHHHCCCHHHHHHHHHHH AANAEWKANGSDEMLAVIAEQSGMDIEAARSSISTFEFPSVEEQLSEAWLGGNAASFMKG HCCCCCCCCCCCCEEEEEECCCCCCHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHH VADVFVEAGSIDSALDSYEDAVNTGPLTAASSM HHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MIKRTACAFVAGAVMALGAQTAAADGHGEITVGYFLEWPMPFLAAKASGAYDEALGMKVN CCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCHHHHHCCCCCCHHHHCCEEE WVSFETGTAMSAAMASGDVQISVSQGVPPFVVATSGGQDIQVIDVAVSYSENDNCVVAEA EEEECCCCCHHHHHCCCCEEEEECCCCCCEEEEECCCCEEEEEEEEEEECCCCCEEEEEE LEIDKDSAGELAGKKVAVPLGTAAHYGFLRQMDHFGVDLASLQIVDMAPPEGAAALSQGA EECCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHCCC VDFACGWGGGLARMKEYGNVLLTGAEKQELGILVFDVTSAPASYIAENSETVAKFAAVTA EEEEECCCCHHHHHHHCCCEEEECCCCCCCCEEEEEECCCCHHHHHCCCHHHHHHHHHHH AANAEWKANGSDEMLAVIAEQSGMDIEAARSSISTFEFPSVEEQLSEAWLGGNAASFMKG HCCCCCCCCCCCCEEEEEECCCCCCHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHH VADVFVEAGSIDSALDSYEDAVNTGPLTAASSM HHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: taurine [Periplasm]; ATP; H2O [C]
Specific reaction: taurine [Periplasm] + ATP + H2O = taurine [Cytoplasm] + ADP + phosphate [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8808933; 9278503; 8774726 [H]