| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
Click here to switch to the map view.
The map label for this gene is camA [H]
Identifier: 110678294
GI number: 110678294
Start: 915689
End: 916897
Strand: Direct
Name: camA [H]
Synonym: RD1_0947
Alternate gene names: 110678294
Gene position: 915689-916897 (Clockwise)
Preceding gene: 110678292
Following gene: 110678295
Centisome position: 22.16
GC content: 60.71
Gene sequence:
>1209_bases ATGAGCCATGTCGTGGTGATCGGAGCGGGTCAGGCGGGGTCGTCCTGCGTGGCCAAGCTGCGCAACGCCGGGTTCGATGG TCAGGTGACCCTGATCGGCGCGGAACCCGTGGCACCCTATCAACGCCCGCCCTTGTCCAAGGCCTATCTGATGGGCGAGA TGGCGCTTGAGCGTCTGTTCCTGCGGCCGGAGCGGTTTTATGCGGATAATGACATTGACCTGCGTCTGAACACGGTTGTC GAAGCGGTTGAGTGCGGTGCGCGCAAGGTCCATCTGGCGGGTGAAACGCTGGACTTCGACGATCTGGTGTTCACGACAGG CTCCACCCCGCGCCGTCTGCCTGCTGCGATTGGCGGCGATCTTGGCCATGTCTTTGTGATGCGCGATCTGGCGGATGCGG ATGCGATGACCTCGCATTTTCGCGCAGGCGCCCGGGTCTTGATCGTTGGTGGCGGCTACATCGGGCTGGAGGCCGCAGCG GTGGCGGCCAAACTGGGGCTGTGCGTGACGCTGGTGGAGATGTCCGAACGCATCTTGCAACGCGTCGCAGCCCCGGAGAC AAGCGCGTATTTTCGCAGTTTGCACAGCGCGCATGGCGTCGATCTGCGCGAAGGTGTCGGGCTGGAACGCCTGATCGGGG ATGAAACGGTGACTGGGGCACGGCTGTCGGACGGCTCCGAAATCGCGGTGGATTACGTGATCGTCGGGGTTGGTATCGCG CCGAATACGGGCTTGGCCGAAGCCGCCGGACTTAAGATCGACAATGGCATTGCAACCGATGTGCATGGCCGCACGTCTGT GCCGCATGTCTGGGCGGCGGGGGATTGCGCGTCTTTTCCCTATCAGCAAGCGCGTATCCGGCTCGAAAGCGTGCCGCATG CCATTGATCAGGCGGAAACCGTAGCTGAAAACATCATGGGCGCTGAAAAGGAATATACCGCCAAACCATGGTTCTGGTCG GATCAGTACGATGTAAAGTTACAGATTGCTGGGCTGAATACTGGATATACAGATGTTGTGCCGCGCATTGGTGAGGGGCA AACGGCGTCGTTCTGGTATTACAGTGGCGACAGGCTTTTGGCCGTGGATGCGATGAACGACCCGCGTGCCTATATGATCG GGAAGCGATTGATCGAGGCGGGGAAAACGGCGGATCGCGCCATCGTTGCGGACTCATCGGCAGACCTAAAGCCGCTGTTG CAGGGGTGA
Upstream 100 bases:
>100_bases GTCATGTGCTACGCCTTTCAGGTATTTGCGTTTGGTCCTCGCAAAGATATAGGGTGCTGCGTCTCAGGCGACCAGTAGTT TCCGAAAGAGGGGGGATAAG
Downstream 100 bases:
>100_bases GAATTATCGCCGGCCAGTTTCGCAGCGTCACGCTTGCCAGTGTGGGCAAGGGCGACGCCGCTGCACACCTGCGCCCAACG ACGGACCGCGTGCGCGAAAG
Product: pyridine nucleotide-disulphide oxidoreductase, putative
Products: oxidized ferredoxin; NADH; H+
Alternate protein names: NA
Number of amino acids: Translated: 402; Mature: 401
Protein sequence:
>402_residues MSHVVVIGAGQAGSSCVAKLRNAGFDGQVTLIGAEPVAPYQRPPLSKAYLMGEMALERLFLRPERFYADNDIDLRLNTVV EAVECGARKVHLAGETLDFDDLVFTTGSTPRRLPAAIGGDLGHVFVMRDLADADAMTSHFRAGARVLIVGGGYIGLEAAA VAAKLGLCVTLVEMSERILQRVAAPETSAYFRSLHSAHGVDLREGVGLERLIGDETVTGARLSDGSEIAVDYVIVGVGIA PNTGLAEAAGLKIDNGIATDVHGRTSVPHVWAAGDCASFPYQQARIRLESVPHAIDQAETVAENIMGAEKEYTAKPWFWS DQYDVKLQIAGLNTGYTDVVPRIGEGQTASFWYYSGDRLLAVDAMNDPRAYMIGKRLIEAGKTADRAIVADSSADLKPLL QG
Sequences:
>Translated_402_residues MSHVVVIGAGQAGSSCVAKLRNAGFDGQVTLIGAEPVAPYQRPPLSKAYLMGEMALERLFLRPERFYADNDIDLRLNTVV EAVECGARKVHLAGETLDFDDLVFTTGSTPRRLPAAIGGDLGHVFVMRDLADADAMTSHFRAGARVLIVGGGYIGLEAAA VAAKLGLCVTLVEMSERILQRVAAPETSAYFRSLHSAHGVDLREGVGLERLIGDETVTGARLSDGSEIAVDYVIVGVGIA PNTGLAEAAGLKIDNGIATDVHGRTSVPHVWAAGDCASFPYQQARIRLESVPHAIDQAETVAENIMGAEKEYTAKPWFWS DQYDVKLQIAGLNTGYTDVVPRIGEGQTASFWYYSGDRLLAVDAMNDPRAYMIGKRLIEAGKTADRAIVADSSADLKPLL QG >Mature_401_residues SHVVVIGAGQAGSSCVAKLRNAGFDGQVTLIGAEPVAPYQRPPLSKAYLMGEMALERLFLRPERFYADNDIDLRLNTVVE AVECGARKVHLAGETLDFDDLVFTTGSTPRRLPAAIGGDLGHVFVMRDLADADAMTSHFRAGARVLIVGGGYIGLEAAAV AAKLGLCVTLVEMSERILQRVAAPETSAYFRSLHSAHGVDLREGVGLERLIGDETVTGARLSDGSEIAVDYVIVGVGIAP NTGLAEAAGLKIDNGIATDVHGRTSVPHVWAAGDCASFPYQQARIRLESVPHAIDQAETVAENIMGAEKEYTAKPWFWSD QYDVKLQIAGLNTGYTDVVPRIGEGQTASFWYYSGDRLLAVDAMNDPRAYMIGKRLIEAGKTADRAIVADSSADLKPLLQ G
Specific function: The oxidation of camphor by cytochrome P450-CAM requires the participation of a flavoprotein, putidaredoxin reductase, and an iron-sulfur protein, putidaredoxin, to mediate the transfer of electrons from NADH to P450 for oxygen activation [H]
COG id: COG0446
COG function: function code R; Uncharacterized NAD(FAD)-dependent dehydrogenases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI21389617, Length=377, Percent_Identity=29.4429708222812, Blast_Score=158, Evalue=7e-39, Organism=Homo sapiens, GI65787454, Length=377, Percent_Identity=29.4429708222812, Blast_Score=158, Evalue=7e-39, Organism=Homo sapiens, GI226437568, Length=377, Percent_Identity=29.4429708222812, Blast_Score=158, Evalue=9e-39, Organism=Homo sapiens, GI22202629, Length=331, Percent_Identity=24.773413897281, Blast_Score=92, Evalue=1e-18, Organism=Homo sapiens, GI4757732, Length=331, Percent_Identity=24.773413897281, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI22202631, Length=107, Percent_Identity=33.6448598130841, Blast_Score=66, Evalue=5e-11, Organism=Homo sapiens, GI195927004, Length=107, Percent_Identity=33.6448598130841, Blast_Score=66, Evalue=5e-11, Organism=Escherichia coli, GI1788892, Length=400, Percent_Identity=31.25, Blast_Score=159, Evalue=3e-40, Organism=Escherichia coli, GI1789065, Length=309, Percent_Identity=29.7734627831715, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI1789765, Length=341, Percent_Identity=28.4457478005865, Blast_Score=86, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17559934, Length=373, Percent_Identity=27.6139410187668, Blast_Score=123, Evalue=2e-28, Organism=Drosophila melanogaster, GI24585130, Length=403, Percent_Identity=26.302729528536, Blast_Score=124, Evalue=8e-29, Organism=Drosophila melanogaster, GI24639257, Length=398, Percent_Identity=26.3819095477387, Blast_Score=122, Evalue=3e-28, Organism=Drosophila melanogaster, GI281359715, Length=398, Percent_Identity=26.3819095477387, Blast_Score=122, Evalue=4e-28, Organism=Drosophila melanogaster, GI281359713, Length=398, Percent_Identity=26.3819095477387, Blast_Score=122, Evalue=4e-28, Organism=Drosophila melanogaster, GI24639250, Length=398, Percent_Identity=26.3819095477387, Blast_Score=122, Evalue=4e-28, Organism=Drosophila melanogaster, GI18543267, Length=398, Percent_Identity=26.3819095477387, Blast_Score=122, Evalue=4e-28, Organism=Drosophila melanogaster, GI24639252, Length=398, Percent_Identity=26.3819095477387, Blast_Score=122, Evalue=4e-28, Organism=Drosophila melanogaster, GI28573993, Length=358, Percent_Identity=27.3743016759777, Blast_Score=101, Evalue=9e-22, Organism=Drosophila melanogaster, GI24581020, Length=358, Percent_Identity=27.3743016759777, Blast_Score=101, Evalue=9e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016156 - InterPro: IPR013027 - InterPro: IPR004099 - InterPro: IPR001327 [H]
Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2 [H]
EC number: 1.18.1.3
Molecular weight: Translated: 42943; Mature: 42812
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHVVVIGAGQAGSSCVAKLRNAGFDGQVTLIGAEPVAPYQRPPLSKAYLMGEMALERLF CCEEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH LRPERFYADNDIDLRLNTVVEAVECGARKVHLAGETLDFDDLVFTTGSTPRRLPAAIGGD CCCHHHCCCCCCCEEHHHHHHHHHCCCEEEEECCCCCCCCCEEEECCCCCCCCCHHHCCC LGHVFVMRDLADADAMTSHFRAGARVLIVGGGYIGLEAAAVAAKLGLCVTLVEMSERILQ CCEEEEEHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH RVAAPETSAYFRSLHSAHGVDLREGVGLERLIGDETVTGARLSDGSEIAVDYVIVGVGIA HHCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCC PNTGLAEAAGLKIDNGIATDVHGRTSVPHVWAAGDCASFPYQQARIRLESVPHAIDQAET CCCCCHHHCCEEECCCCEECCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCHHHHHHHH VAENIMGAEKEYTAKPWFWSDQYDVKLQIAGLNTGYTDVVPRIGEGQTASFWYYSGDRLL HHHHHHCCCCCCCCCCCEECCCCEEEEEEEECCCCHHHHCCCCCCCCEEEEEEEECCEEE AVDAMNDPRAYMIGKRLIEAGKTADRAIVADSSADLKPLLQG EEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHCCC >Mature Secondary Structure SHVVVIGAGQAGSSCVAKLRNAGFDGQVTLIGAEPVAPYQRPPLSKAYLMGEMALERLF CEEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH LRPERFYADNDIDLRLNTVVEAVECGARKVHLAGETLDFDDLVFTTGSTPRRLPAAIGGD CCCHHHCCCCCCCEEHHHHHHHHHCCCEEEEECCCCCCCCCEEEECCCCCCCCCHHHCCC LGHVFVMRDLADADAMTSHFRAGARVLIVGGGYIGLEAAAVAAKLGLCVTLVEMSERILQ CCEEEEEHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH RVAAPETSAYFRSLHSAHGVDLREGVGLERLIGDETVTGARLSDGSEIAVDYVIVGVGIA HHCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCC PNTGLAEAAGLKIDNGIATDVHGRTSVPHVWAAGDCASFPYQQARIRLESVPHAIDQAET CCCCCHHHCCEEECCCCEECCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCHHHHHHHH VAENIMGAEKEYTAKPWFWSDQYDVKLQIAGLNTGYTDVVPRIGEGQTASFWYYSGDRLL HHHHHHCCCCCCCCCCCEECCCCEEEEEEEECCCCHHHHCCCCCCCCEEEEEEEECCEEE AVDAMNDPRAYMIGKRLIEAGKTADRAIVADSSADLKPLLQG EEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: FAD. [C]
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: reduced ferredoxin; NAD+
Specific reaction: reduced ferredoxin + NAD+ = oxidized ferredoxin + NADH + H+
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2180940; 2613690; 3003058; 12011076; 11524002 [H]