BacMap

Definition	Roseobacter denitrificans OCh 114, complete genome.
Accession	NC_008209
Length	4,133,097

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The map label for this gene is ssuB3 [H]

Identifier: 110678251

GI number: 110678251

Start: 877043

End: 877642

Strand: Direct

Name: ssuB3 [H]

Synonym: RD1_0904

Alternate gene names: 110678251

Gene position: 877043-877642 (Clockwise)

Preceding gene: 110678250

Following gene: 110678255

Centisome position: 21.22

GC content: 59.0

Gene sequence:

>600_bases
ATGATCAGCGTCAGTATCAGATCCAAGGTCTATGGGGACAAACCCGTTCTGGGTCAGATAGACTTTGATGTTGCCCGTGG
TGAAACACTGGCGCTGGTCGGGCCCTCCGGGATCGGCAAATCGACCTTGCTGCGCATTTTGGCGGGGATTGATCAGAAAT
TCGACGGGACGATCAAAAGCTCTGTGTCGCAGGCCATTGTATTTCAGGAACCGACCTTGCTGCTGTGGCGTTCGGTTCTG
GATAACCTTTTGATCCCGCATCCGGACCTCAGCGTTGAGGACGCCCGCGCCAGTCTCGAACGGGTCGGCCTTGCGGGCAA
AGACACGCTGTTCCCCGGGCAACTGTCGCTGGGCCAACAGCGCCGATTGTCGCTGGCCCGTGCCTTTGCCGGTGCGCCGG
ATGTGCTGATCATGGATGAACCCTTCGTCTCGCTTGATCAGAAAACCGCCGAGAGCATGTTGCGCCTGACCGAATCGCTG
ATTGCGACGCATAAACCGGCGACGGTTTTTGTCACCCACGACGCCCGCGAGGCAGAGCGTCTGGCGGATCGGGTTCTGAC
GCTTGAGGCGTCACCGAGCGGGGCGCAGCTTTTGCAATAA

Upstream 100 bases:

>100_bases
TGGTGCTGGTTTACGCGTTCTCCTTCATCACTGTGATGCTGCTGGTGGAGTGGATTTTCCTGCAACCGTTCGAGCGTCAT
GTGGCGCGCTGGCGCAGCGC

Downstream 100 bases:

>100_bases
CGTCCCGTGCCAAAGCGTTTCGAGTTGATGTTGGATCACGTGTTCGCTGCCTCTTCCTGCGGTCGAACGCGAAAAGTGAT
ATGCCATGCTTCAGGTTGAA

Product: ABC transporter, putative

Products: ADP; phosphate; S2O32- [Cytoplasm]; SO42- [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MISVSIRSKVYGDKPVLGQIDFDVARGETLALVGPSGIGKSTLLRILAGIDQKFDGTIKSSVSQAIVFQEPTLLLWRSVL
DNLLIPHPDLSVEDARASLERVGLAGKDTLFPGQLSLGQQRRLSLARAFAGAPDVLIMDEPFVSLDQKTAESMLRLTESL
IATHKPATVFVTHDAREAERLADRVLTLEASPSGAQLLQ

Sequences:

>Translated_199_residues
MISVSIRSKVYGDKPVLGQIDFDVARGETLALVGPSGIGKSTLLRILAGIDQKFDGTIKSSVSQAIVFQEPTLLLWRSVL
DNLLIPHPDLSVEDARASLERVGLAGKDTLFPGQLSLGQQRRLSLARAFAGAPDVLIMDEPFVSLDQKTAESMLRLTESL
IATHKPATVFVTHDAREAERLADRVLTLEASPSGAQLLQ
>Mature_199_residues
MISVSIRSKVYGDKPVLGQIDFDVARGETLALVGPSGIGKSTLLRILAGIDQKFDGTIKSSVSQAIVFQEPTLLLWRSVL
DNLLIPHPDLSVEDARASLERVGLAGKDTLFPGQLSLGQQRRLSLARAFAGAPDVLIMDEPFVSLDQKTAESMLRLTESL
IATHKPATVFVTHDAREAERLADRVLTLEASPSGAQLLQ

Specific function: Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system [H]

COG id: COG1116

COG function: function code P; ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI153792144, Length=192, Percent_Identity=27.6041666666667, Blast_Score=68, Evalue=5e-12,
Organism=Homo sapiens, GI27436953, Length=179, Percent_Identity=30.1675977653631, Blast_Score=67, Evalue=8e-12,
Organism=Homo sapiens, GI10947135, Length=178, Percent_Identity=34.2696629213483, Blast_Score=64, Evalue=8e-11,
Organism=Homo sapiens, GI69354671, Length=178, Percent_Identity=34.2696629213483, Blast_Score=64, Evalue=8e-11,
Organism=Escherichia coli, GI1788761, Length=208, Percent_Identity=37.0192307692308, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI1786563, Length=207, Percent_Identity=34.2995169082126, Blast_Score=113, Evalue=7e-27,
Organism=Escherichia coli, GI1787164, Length=198, Percent_Identity=38.3838383838384, Blast_Score=113, Evalue=8e-27,
Organism=Escherichia coli, GI1786703, Length=197, Percent_Identity=40.1015228426396, Blast_Score=107, Evalue=5e-25,
Organism=Escherichia coli, GI1788225, Length=217, Percent_Identity=35.9447004608295, Blast_Score=104, Evalue=4e-24,
Organism=Escherichia coli, GI1787029, Length=211, Percent_Identity=31.2796208530806, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1789873, Length=211, Percent_Identity=36.0189573459716, Blast_Score=97, Evalue=6e-22,
Organism=Escherichia coli, GI1787712, Length=195, Percent_Identity=34.8717948717949, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI87081709, Length=200, Percent_Identity=32.5, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1789672, Length=215, Percent_Identity=32.093023255814, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI1787758, Length=182, Percent_Identity=36.2637362637363, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1787089, Length=206, Percent_Identity=33.9805825242718, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI87082267, Length=199, Percent_Identity=34.1708542713568, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI87081834, Length=210, Percent_Identity=32.8571428571429, Blast_Score=87, Evalue=6e-19,
Organism=Escherichia coli, GI1787370, Length=198, Percent_Identity=31.8181818181818, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1787105, Length=205, Percent_Identity=32.1951219512195, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI1789032, Length=189, Percent_Identity=32.8042328042328, Blast_Score=84, Evalue=6e-18,
Organism=Escherichia coli, GI87081791, Length=198, Percent_Identity=31.8181818181818, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1786253, Length=201, Percent_Identity=29.8507462686567, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1786872, Length=211, Percent_Identity=31.7535545023697, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1790467, Length=209, Percent_Identity=31.1004784688995, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1789586, Length=200, Percent_Identity=34, Blast_Score=80, Evalue=7e-17,
Organism=Escherichia coli, GI1788506, Length=213, Percent_Identity=30.5164319248826, Blast_Score=80, Evalue=9e-17,
Organism=Escherichia coli, GI1786398, Length=211, Percent_Identity=29.8578199052133, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1786698, Length=200, Percent_Identity=32, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1789962, Length=195, Percent_Identity=32.3076923076923, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI2367384, Length=200, Percent_Identity=29, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790162, Length=216, Percent_Identity=31.0185185185185, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1788450, Length=214, Percent_Identity=30.8411214953271, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1790544, Length=223, Percent_Identity=28.6995515695067, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1788053, Length=196, Percent_Identity=31.1224489795918, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI145693107, Length=196, Percent_Identity=34.1836734693878, Blast_Score=74, Evalue=5e-15,
Organism=Escherichia coli, GI1789864, Length=224, Percent_Identity=24.1071428571429, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1788472, Length=195, Percent_Identity=29.7435897435897, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787792, Length=193, Percent_Identity=29.5336787564767, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1787500, Length=189, Percent_Identity=28.5714285714286, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1788165, Length=193, Percent_Identity=30.0518134715026, Blast_Score=70, Evalue=7e-14,
Organism=Escherichia coli, GI1787547, Length=206, Percent_Identity=30.5825242718447, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1790525, Length=219, Percent_Identity=27.8538812785388, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789991, Length=206, Percent_Identity=26.2135922330097, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI48995001, Length=204, Percent_Identity=30.3921568627451, Blast_Score=68, Evalue=3e-13,
Organism=Escherichia coli, GI1787041, Length=192, Percent_Identity=27.6041666666667, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1790190, Length=188, Percent_Identity=26.5957446808511, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1788897, Length=201, Percent_Identity=26.865671641791, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789593, Length=198, Percent_Identity=26.7676767676768, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1788644, Length=215, Percent_Identity=29.3023255813954, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787772, Length=187, Percent_Identity=31.0160427807487, Blast_Score=61, Evalue=5e-11,
Organism=Escherichia coli, GI87081782, Length=197, Percent_Identity=29.4416243654822, Blast_Score=60, Evalue=7e-11,
Organism=Escherichia coli, GI87082064, Length=177, Percent_Identity=28.8135593220339, Blast_Score=60, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI193211015, Length=185, Percent_Identity=31.8918918918919, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI193211017, Length=185, Percent_Identity=31.8918918918919, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71996809, Length=185, Percent_Identity=31.3513513513514, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17567265, Length=164, Percent_Identity=33.5365853658537, Blast_Score=73, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17559834, Length=170, Percent_Identity=32.3529411764706, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI212646699, Length=201, Percent_Identity=29.8507462686567, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71992285, Length=185, Percent_Identity=27.5675675675676, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17565938, Length=202, Percent_Identity=32.6732673267327, Blast_Score=70, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17555318, Length=182, Percent_Identity=32.4175824175824, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI115535101, Length=164, Percent_Identity=31.7073170731707, Blast_Score=69, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17565586, Length=190, Percent_Identity=26.8421052631579, Blast_Score=66, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17569081, Length=176, Percent_Identity=29.5454545454545, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17558664, Length=214, Percent_Identity=28.5046728971963, Blast_Score=64, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6320874, Length=178, Percent_Identity=30.8988764044944, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI221500365, Length=204, Percent_Identity=30.3921568627451, Blast_Score=83, Evalue=1e-16,
Organism=Drosophila melanogaster, GI116007184, Length=204, Percent_Identity=30.3921568627451, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24641342, Length=175, Percent_Identity=31.4285714285714, Blast_Score=67, Evalue=6e-12,
Organism=Drosophila melanogaster, GI85726357, Length=200, Percent_Identity=30, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI28574744, Length=157, Percent_Identity=35.031847133758, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24642252, Length=176, Percent_Identity=31.25, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI18859989, Length=176, Percent_Identity=31.25, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR017875
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: 3.6.3.25 [C]

Molecular weight: Translated: 21483; Mature: 21483

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISVSIRSKVYGDKPVLGQIDFDVARGETLALVGPSGIGKSTLLRILAGIDQKFDGTIKS
CEEEEECHHHCCCCCCEEEECCEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHH
SVSQAIVFQEPTLLLWRSVLDNLLIPHPDLSVEDARASLERVGLAGKDTLFPGQLSLGQQ
HHHHHHEECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHH
RRLSLARAFAGAPDVLIMDEPFVSLDQKTAESMLRLTESLIATHKPATVFVTHDAREAER
HHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHH
LADRVLTLEASPSGAQLLQ
HHHHHEEEECCCCCHHHCC
>Mature Secondary Structure
MISVSIRSKVYGDKPVLGQIDFDVARGETLALVGPSGIGKSTLLRILAGIDQKFDGTIKS
CEEEEECHHHCCCCCCEEEECCEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHH
SVSQAIVFQEPTLLLWRSVLDNLLIPHPDLSVEDARASLERVGLAGKDTLFPGQLSLGQQ
HHHHHHEECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHH
RRLSLARAFAGAPDVLIMDEPFVSLDQKTAESMLRLTESLIATHKPATVFVTHDAREAER
HHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHH
LADRVLTLEASPSGAQLLQ
HHHHHEEEECCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: S2O32- [Periplasm]; H2O; SO42- [Periplasm]; ATP [C]

Specific reaction: ATP + S2O32- [Periplasm] + H2O = ADP + phosphate + S2O32- [Cytoplasm] SO42- [Periplasm] + H2O + ATP = SO42- [Cytoplasm] + phosphate + ADP [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA