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The map label for this gene is agmR [H]

Identifier: 110678226

GI number: 110678226

Start: 855150

End: 855869

Strand: Direct

Name: agmR [H]

Synonym: RD1_0879

Alternate gene names: 110678226

Gene position: 855150-855869 (Clockwise)

Preceding gene: 110678225

Following gene: 110678227

Centisome position: 20.69

GC content: 56.94

Gene sequence:

>720_bases
ATGAAACACGCGCGTGCGCCACTCAGTCAGGAGGAAGTGTCAAATATACTCATCGTTGATGATCACCCTTTGTACAGCGA
TGCATTGGAATCGGCCCTTGAACTGGTACTGACGGATGTGGACATCAGAAAGGCGCAAAATCTCGGGGATGCGATTGCCG
CCGTAAAGGGCGGGTTCAAACCCGAGCTTGTGATGTTTGATCTGAAACTTCCGGATGTCACCGGGATTTCCGGCTTTGTG
AGCCTGCGGCAACATCTTCCCAAGGCGCGCATACTGGTGATTTCGTCGCTGGCGTCTTTTGATCTTGTGCAGTCATTGCT
GCGGGAAGGGGCCGCTGGCTTTTTGCCAAAAGACACCTCTGCGCGGGGGCTGAAATCGGTGCTGTCGGATATCATCGCCG
GTCAGACCTATGTGCCGAAAGACTATCAGCAACCCAATTCCTGCGAGCGTGACGCGCTGGCAGACGAGTTTCAACACCCC
AAGCTGGCAGAACTGACCCCCCAGCAACAGCGGATCATGCGCCTGATCTGCTGTGGCAAGCCGAACAAGCAGATCGCCTA
TGAACTGGACCTCGCAGAGGCGACCGTAAAGGCACATATCACCGCCTTGCTGCGGCGGCTTGGTGTGCGCAACCGGACCC
AAGCGGTGGTTCTGGTCGAAGGGGCGCTGGCGGCACAACGGGGTGACGAACCTGAAGCCCGCGCCTTTCTCAAGCATTAG

Upstream 100 bases:

>100_bases
AGGGTGGGCTGTCTTTGTGGTCAGTGTCTCATCCTCCTTTTGCGAAGCAGTTGAAAATGCAAGCGTTACGGGTAAGATCG
CGGGTGGGAGGACTAAATCT

Downstream 100 bases:

>100_bases
GAGGTCGGGCCATGGACCGCGCGCGCGCTGAGCCGTCCTTTGTGCGGGTGGCCTTGTCACGCGCCGTTGATGCAGCAGCG
GCGGCGCGGCTTGCAGCGCA

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: Protein AgmR [H]

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MKHARAPLSQEEVSNILIVDDHPLYSDALESALELVLTDVDIRKAQNLGDAIAAVKGGFKPELVMFDLKLPDVTGISGFV
SLRQHLPKARILVISSLASFDLVQSLLREGAAGFLPKDTSARGLKSVLSDIIAGQTYVPKDYQQPNSCERDALADEFQHP
KLAELTPQQQRIMRLICCGKPNKQIAYELDLAEATVKAHITALLRRLGVRNRTQAVVLVEGALAAQRGDEPEARAFLKH

Sequences:

>Translated_239_residues
MKHARAPLSQEEVSNILIVDDHPLYSDALESALELVLTDVDIRKAQNLGDAIAAVKGGFKPELVMFDLKLPDVTGISGFV
SLRQHLPKARILVISSLASFDLVQSLLREGAAGFLPKDTSARGLKSVLSDIIAGQTYVPKDYQQPNSCERDALADEFQHP
KLAELTPQQQRIMRLICCGKPNKQIAYELDLAEATVKAHITALLRRLGVRNRTQAVVLVEGALAAQRGDEPEARAFLKH
>Mature_239_residues
MKHARAPLSQEEVSNILIVDDHPLYSDALESALELVLTDVDIRKAQNLGDAIAAVKGGFKPELVMFDLKLPDVTGISGFV
SLRQHLPKARILVISSLASFDLVQSLLREGAAGFLPKDTSARGLKSVLSDIIAGQTYVPKDYQQPNSCERDALADEFQHP
KLAELTPQQQRIMRLICCGKPNKQIAYELDLAEATVKAHITALLRRLGVRNRTQAVVLVEGALAAQRGDEPEARAFLKH

Specific function: Positive activator for glycerol metabolism [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=206, Percent_Identity=31.0679611650485, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787473, Length=221, Percent_Identity=27.6018099547511, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789937, Length=207, Percent_Identity=23.1884057971014, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1788712, Length=196, Percent_Identity=27.0408163265306, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1788222, Length=200, Percent_Identity=23.5, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786747, Length=213, Percent_Identity=23.0046948356808, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 26194; Mature: 26194

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHARAPLSQEEVSNILIVDDHPLYSDALESALELVLTDVDIRKAQNLGDAIAAVKGGFK
CCCCCCCCCHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PELVMFDLKLPDVTGISGFVSLRQHLPKARILVISSLASFDLVQSLLREGAAGFLPKDTS
CCEEEEEECCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
ARGLKSVLSDIIAGQTYVPKDYQQPNSCERDALADEFQHPKLAELTPQQQRIMRLICCGK
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHCCCHHHHHHHHHHCCC
PNKQIAYELDLAEATVKAHITALLRRLGVRNRTQAVVLVEGALAAQRGDEPEARAFLKH
CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHCCCCCHHHHHHHCC
>Mature Secondary Structure
MKHARAPLSQEEVSNILIVDDHPLYSDALESALELVLTDVDIRKAQNLGDAIAAVKGGFK
CCCCCCCCCHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PELVMFDLKLPDVTGISGFVSLRQHLPKARILVISSLASFDLVQSLLREGAAGFLPKDTS
CCEEEEEECCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
ARGLKSVLSDIIAGQTYVPKDYQQPNSCERDALADEFQHPKLAELTPQQQRIMRLICCGK
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHCCCHHHHHHHHHHCCC
PNKQIAYELDLAEATVKAHITALLRRLGVRNRTQAVVLVEGALAAQRGDEPEARAFLKH
CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938886; 10984043 [H]