| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is kch [C]
Identifier: 110678086
GI number: 110678086
Start: 690832
End: 691650
Strand: Direct
Name: kch [C]
Synonym: RD1_0715
Alternate gene names: 110678086
Gene position: 690832-691650 (Clockwise)
Preceding gene: 110678085
Following gene: 110678087
Centisome position: 16.71
GC content: 55.19
Gene sequence:
>819_bases TTGTCCTTGCCAAGCCAGCCGGGTTTTGAGTTGATGTGCGCCATGATGCGTGACCTGAAACAAACCATGACGGAGCTTTA CACAGGCTCACAGCAGCGTTCTCGGCGGTTCCGGTTTGGCCTGATACTATTCGATGTGTTCACGATCATCCTGTTCATCG CCATTGCGCCTCTCCAGGCGACAGTGGGGTTGGAAGCCCTTGGGTTTGTGCTTGGCCTGTTGATTCTGGCGGATTTTACC GCGCGGCTCTGGATTGCGAGCGACCGCAGGGAGATGCTTTTGAAAATCTACACAATTGCGGATGTGATCGTGATCCTGTC TTTGTTGATCGCGCCTTTCATTCACGCAAACCTCGCCTTTCTGCGTATTCTGCGCGGCCTGCGGATCATCCACTCCTATC ACCTGCTGCGTGATCTGCGGCGTGTCAGTCCGTTCTTTGTCAAACATGAAGGGGCCGTCATCGCGGCCATCAACCTGTTT GTGTTCGTATTTTTCACGACCTCGGTCGTCTTTGCGCTGTTTGTCGAACGTGGGACGGGGCTTGAGGGCTATATCAACGC GCTTTATTTCACCGTCTCCACGCTGACGACCACCGGGTATGGGGATATCACACCAACCACCACGGGCGGCAAACTGCTGG CTGTGGTGATCATGGTGGTGGGCGTGGCCCTGTTTGTGCAGCTTGCGCGGGCCATCATCCAGCCGCCCAAGGTACAGTAT ACCTGTCAGTCCTGCGGATTGACCAAACATGACCATGACGCGGTACACTGCAAGCACTGTGGTGCCGTGGTTCGCATCAA AACCGAAGGTATGGTATAG
Upstream 100 bases:
>100_bases TTCCATTTGCGAGTATGCAGGTGAACCTATGTCTTGAAGCCCGGAGCGCAAGCCCGTTCTGCGCGCACGGTTTCGCGAGG TCATACGTTCTGCCCCCTGA
Downstream 100 bases:
>100_bases GAATCTGGTGCATAAAGCGGTCTTGAAATTCACACTCCTGAGCGCCTTGTGGTTGGGCCTTCTGGCGACATCCGGCGGGG CAGAAGAACCGCGCGCCGGT
Product: putative voltage-gated K+ channel protein
Products: K (I) [Cytoplasm] [C]
Alternate protein names: Cation Channel Family Protein; Ion Transport 2 Domain Protein; Ion Channel Family; Ion Transporter; Ion Transport Domain Protein C-Terminal; Voltage-Gated K+ Channel Protein; Ionic Voltage-Gated Channel Protein; Ion Transport 2 Family Protein
Number of amino acids: Translated: 272; Mature: 271
Protein sequence:
>272_residues MSLPSQPGFELMCAMMRDLKQTMTELYTGSQQRSRRFRFGLILFDVFTIILFIAIAPLQATVGLEALGFVLGLLILADFT ARLWIASDRREMLLKIYTIADVIVILSLLIAPFIHANLAFLRILRGLRIIHSYHLLRDLRRVSPFFVKHEGAVIAAINLF VFVFFTTSVVFALFVERGTGLEGYINALYFTVSTLTTTGYGDITPTTTGGKLLAVVIMVVGVALFVQLARAIIQPPKVQY TCQSCGLTKHDHDAVHCKHCGAVVRIKTEGMV
Sequences:
>Translated_272_residues MSLPSQPGFELMCAMMRDLKQTMTELYTGSQQRSRRFRFGLILFDVFTIILFIAIAPLQATVGLEALGFVLGLLILADFT ARLWIASDRREMLLKIYTIADVIVILSLLIAPFIHANLAFLRILRGLRIIHSYHLLRDLRRVSPFFVKHEGAVIAAINLF VFVFFTTSVVFALFVERGTGLEGYINALYFTVSTLTTTGYGDITPTTTGGKLLAVVIMVVGVALFVQLARAIIQPPKVQY TCQSCGLTKHDHDAVHCKHCGAVVRIKTEGMV >Mature_271_residues SLPSQPGFELMCAMMRDLKQTMTELYTGSQQRSRRFRFGLILFDVFTIILFIAIAPLQATVGLEALGFVLGLLILADFTA RLWIASDRREMLLKIYTIADVIVILSLLIAPFIHANLAFLRILRGLRIIHSYHLLRDLRRVSPFFVKHEGAVIAAINLFV FVFFTTSVVFALFVERGTGLEGYINALYFTVSTLTTTGYGDITPTTTGGKLLAVVIMVVGVALFVQLARAIIQPPKVQYT CQSCGLTKHDHDAVHCKHCGAVVRIKTEGMV
Specific function: May Play A Role In The Defense Against Osmotic Shock. [C]
COG id: COG1226
COG function: function code P; Kef-type K+ transport systems, predicted NAD-binding component
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30257; Mature: 30125
Theoretical pI: Translated: 9.66; Mature: 9.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLPSQPGFELMCAMMRDLKQTMTELYTGSQQRSRRFRFGLILFDVFTIILFIAIAPLQA CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TVGLEALGFVLGLLILADFTARLWIASDRREMLLKIYTIADVIVILSLLIAPFIHANLAF HHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LRILRGLRIIHSYHLLRDLRRVSPFFVKHEGAVIAAINLFVFVFFTTSVVFALFVERGTG HHHHHHHHHHHHHHHHHHHHHHCCHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC LEGYINALYFTVSTLTTTGYGDITPTTTGGKLLAVVIMVVGVALFVQLARAIIQPPKVQY HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE TCQSCGLTKHDHDAVHCKHCGAVVRIKTEGMV EHHHCCCCCCCCCCHHHHHCCEEEEEECCCCC >Mature Secondary Structure SLPSQPGFELMCAMMRDLKQTMTELYTGSQQRSRRFRFGLILFDVFTIILFIAIAPLQA CCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TVGLEALGFVLGLLILADFTARLWIASDRREMLLKIYTIADVIVILSLLIAPFIHANLAF HHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LRILRGLRIIHSYHLLRDLRRVSPFFVKHEGAVIAAINLFVFVFFTTSVVFALFVERGTG HHHHHHHHHHHHHHHHHHHHHHCCHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC LEGYINALYFTVSTLTTTGYGDITPTTTGGKLLAVVIMVVGVALFVQLARAIIQPPKVQY HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE TCQSCGLTKHDHDAVHCKHCGAVVRIKTEGMV EHHHCCCCCCCCCCHHHHHCCEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: K (I) [Periplasm] [C]
Specific reaction: K (I) [Periplasm] = K (I) [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA