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The map label for this gene is ybbO [C]

Identifier: 110678072

GI number: 110678072

Start: 676252

End: 676983

Strand: Direct

Name: ybbO [C]

Synonym: RD1_0697

Alternate gene names: 110678072

Gene position: 676252-676983 (Clockwise)

Preceding gene: 110678071

Following gene: 110678076

Centisome position: 16.36

GC content: 58.47

Gene sequence:

>732_bases
ATGCGTGACTGGAAAGGCAAACGATACTGGCTTGTTGGCGCAAGTGACGGTTTGGGCGCGGCGCTCGCGCTGAAGATGAG
CCGCGCCGGCGCGCATGTCATCCTGTCCGCCCGGTCCGCGGATAAACTGGCCGCCGTTGCGGAAAACCTGCCGAATGAGG
CTTCGGTTCAGGTGGTTGACGTGTCGGATGATGCAAGTGTCGATCAGGCCGCAAACGCAATCGGGCAGATAGATGGCGTC
GTCTATCTGGCGGGCGTCTACTGGCCATTTGCGGCACAGGAGTGGGATGCCGAAAAAGCGACCGCGATGGCGGATATCAA
TTTCACCGGCCTGGTGCGTGTGATGGGGCGGATCGTGCCGCAATTCGTGTCCAGAGGCGCGGGCCATGTGGTGATCACCG
GCAGTCTGTCGGGGTTTCGCGGGCTTCCCGGTTCGATCGGATACACGGCATCAAAGGCCGGTACGATGTCGCTGGCGGAA
TGCATGTATGCGGACCTGCGCGGCAGCGGTGTGGACGTGCAGGTGTCAAACCCCGGCTTTATCAAGACGCAATTGACGGA
CAAGAACGACTTTTCCATGCCCTTCATCATGACACCGGATGAGGCAGCGGATCACATGTTCCGTCACATGAACACCAAGC
GTTTCAAGAACAGTTTTCCGACGCTGTTTTCATGGGTGTTTCGGGGCAGCCAATTCCTGCCGGACTGGCTTTATTTCCGT
ATCTTTTCCTGA

Upstream 100 bases:

>100_bases
ATCTGACGCCGAATGGTACGATCATGAACCGCTCGCAGTTCAGAAAATTCGGCATCAAGGTTGCGGAGCTTGTCGCGACG
ATGCGGCCTAAGGAAGCATA

Downstream 100 bases:

>100_bases
GCGCTAAAGCCTGTCGCGGTGCGTCCTGTAGGTCGTCGCAGCGCGTTGCCAGATAGCGCTATTGTCCTTCAGGGACATCA
GCGTCGGCAGCAATTGCGCG

Product: oxidoreductase, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MRDWKGKRYWLVGASDGLGAALALKMSRAGAHVILSARSADKLAAVAENLPNEASVQVVDVSDDASVDQAANAIGQIDGV
VYLAGVYWPFAAQEWDAEKATAMADINFTGLVRVMGRIVPQFVSRGAGHVVITGSLSGFRGLPGSIGYTASKAGTMSLAE
CMYADLRGSGVDVQVSNPGFIKTQLTDKNDFSMPFIMTPDEAADHMFRHMNTKRFKNSFPTLFSWVFRGSQFLPDWLYFR
IFS

Sequences:

>Translated_243_residues
MRDWKGKRYWLVGASDGLGAALALKMSRAGAHVILSARSADKLAAVAENLPNEASVQVVDVSDDASVDQAANAIGQIDGV
VYLAGVYWPFAAQEWDAEKATAMADINFTGLVRVMGRIVPQFVSRGAGHVVITGSLSGFRGLPGSIGYTASKAGTMSLAE
CMYADLRGSGVDVQVSNPGFIKTQLTDKNDFSMPFIMTPDEAADHMFRHMNTKRFKNSFPTLFSWVFRGSQFLPDWLYFR
IFS
>Mature_243_residues
MRDWKGKRYWLVGASDGLGAALALKMSRAGAHVILSARSADKLAAVAENLPNEASVQVVDVSDDASVDQAANAIGQIDGV
VYLAGVYWPFAAQEWDAEKATAMADINFTGLVRVMGRIVPQFVSRGAGHVVITGSLSGFRGLPGSIGYTASKAGTMSLAE
CMYADLRGSGVDVQVSNPGFIKTQLTDKNDFSMPFIMTPDEAADHMFRHMNTKRFKNSFPTLFSWVFRGSQFLPDWLYFR
IFS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI210032110, Length=240, Percent_Identity=22.5, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI7706318, Length=206, Percent_Identity=24.7572815533981, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI20149619, Length=201, Percent_Identity=25.8706467661692, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI32483357, Length=195, Percent_Identity=31.7948717948718, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI226371731, Length=238, Percent_Identity=22.6890756302521, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI4503817, Length=236, Percent_Identity=24.1525423728814, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI1786701, Length=258, Percent_Identity=25.968992248062, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787335, Length=188, Percent_Identity=26.5957446808511, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI87082100, Length=194, Percent_Identity=28.3505154639175, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790717, Length=194, Percent_Identity=28.3505154639175, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787820, Length=176, Percent_Identity=26.1363636363636, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1786812, Length=222, Percent_Identity=27.9279279279279, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17508895, Length=248, Percent_Identity=24.5967741935484, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI193203115, Length=238, Percent_Identity=23.5294117647059, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71997402, Length=188, Percent_Identity=28.7234042553192, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI32563809, Length=223, Percent_Identity=26.457399103139, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17507613, Length=223, Percent_Identity=26.457399103139, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI115534660, Length=189, Percent_Identity=27.5132275132275, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193203117, Length=234, Percent_Identity=23.5042735042735, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21358495, Length=259, Percent_Identity=23.9382239382239, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI23397609, Length=182, Percent_Identity=30.7692307692308, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI28571526, Length=196, Percent_Identity=28.0612244897959, Blast_Score=78, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24644339, Length=191, Percent_Identity=27.2251308900524, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI21357041, Length=193, Percent_Identity=26.4248704663212, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI116007236, Length=225, Percent_Identity=28.4444444444444, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24584752, Length=259, Percent_Identity=25.8687258687259, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI116007234, Length=226, Percent_Identity=27.8761061946903, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24580925, Length=194, Percent_Identity=26.8041237113402, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24641232, Length=203, Percent_Identity=26.6009852216749, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21356301, Length=207, Percent_Identity=26.0869565217391, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26418; Mature: 26418

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDWKGKRYWLVGASDGLGAALALKMSRAGAHVILSARSADKLAAVAENLPNEASVQVVD
CCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCHHHHHHHHHCCCCCCCEEEEE
VSDDASVDQAANAIGQIDGVVYLAGVYWPFAAQEWDAEKATAMADINFTGLVRVMGRIVP
CCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCHHHEEECCCHHHHHHHHHHHHH
QFVSRGAGHVVITGSLSGFRGLPGSIGYTASKAGTMSLAECMYADLRGSGVDVQVSNPGF
HHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCE
IKTQLTDKNDFSMPFIMTPDEAADHMFRHMNTKRFKNSFPTLFSWVFRGSQFLPDWLYFR
EEEEECCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCEEEEE
IFS
ECC
>Mature Secondary Structure
MRDWKGKRYWLVGASDGLGAALALKMSRAGAHVILSARSADKLAAVAENLPNEASVQVVD
CCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCHHHHHHHHHCCCCCCCEEEEE
VSDDASVDQAANAIGQIDGVVYLAGVYWPFAAQEWDAEKATAMADINFTGLVRVMGRIVP
CCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCHHHEEECCCHHHHHHHHHHHHH
QFVSRGAGHVVITGSLSGFRGLPGSIGYTASKAGTMSLAECMYADLRGSGVDVQVSNPGF
HHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCE
IKTQLTDKNDFSMPFIMTPDEAADHMFRHMNTKRFKNSFPTLFSWVFRGSQFLPDWLYFR
EEEEECCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCEEEEE
IFS
ECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1730672 [H]