Definition Roseobacter denitrificans OCh 114, complete genome.
Accession NC_008209
Length 4,133,097

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The map label for this gene is yagG [C]

Identifier: 110678070

GI number: 110678070

Start: 674459

End: 675688

Strand: Direct

Name: yagG [C]

Synonym: RD1_0695

Alternate gene names: 110678070

Gene position: 674459-675688 (Clockwise)

Preceding gene: 110678069

Following gene: 110678071

Centisome position: 16.32

GC content: 60.57

Gene sequence:

>1230_bases
GTGCAAAAGACGCAGAGGTTACCCGCCTATTCGCTTTTTGCGGCTCTGCTGGCAGCGGCGGGTTTGCCGATATACATCCA
CGCGCCGAAATTCTATCTGGATGAATATGGTGTGTCGCTTGCGGCCTTGGGCGCGGTGCTGTTCGGGCTGCGCCTGCTTG
ATGTGGTTCAGGACCCGCTGCTGGGCAAACTGGCGGAAAAAACCCGCACGCAGCGCCGCACCTATGTCTCCATTGCTGCG
CTGATCATGGCTGTTGCCATGGTTGCGCTTTTTGCGGTGCCGCCTTTGCTGCCCCCGCTGGTGTGGTTCGGTCTGTGCCT
GACGTTCGTGTTTTCAGCGTTCAGCTTTCTGACCATCAACTTTTACGCACAGGGCGTGATCAAGGCGGATGCGATGCCCG
GGCAAGGGCATCTGCGTCTTGCCCGTTGGCGCGAAAGCGGTGCGCTCACTGGCGTATGCGTGGCTTCGGTCGCGCCGGTT
GCCCTGGGGGCGGCGATGAATGCGCCTTTTGCGGGGTTTGCCATCGGGTTTTGTGTACTGGGCCTCGCGGCCGTCTGGGC
GATGAGAGAGGAATGGAGCACGGCCGGCGTCGCGGCGTCCACCGGGTTTGCCACGGTGCTCAAAGACCCGCTGGCGCGGC
GTTTGTTGTTGATCGCCATGGTCAACGCCGCCCCCGTTGCCGTCAGTTCCACGCTGTTTTTGTTCTTTGTGGAAAGCAAG
CTGGCCGCCCCGGGTTTCGAGGGGCCACTGCTGTTGCTCTTCTTCTTGTCCGCAGCGCTTGCCGCCCCGGTCTGGAGCGC
TCTGGCAGAGCGTTTTGGGCCGCGCAATGTACTTTTGCTTGCGATGGGTCTGGCCATCGCGGCTTTTGGACTTACCTTAA
CGCTCGGTCCCGGCGATTGGGTGCTGTTTGCTCTGATCTGCTTGGCGTCCGGTGCGACTCTGGGGGCTGATCTGACATTG
TTACCGGCGATTTTTGCGTCCCGTATGGCGCAAATCTCGCCATCGGCATCAGAGGGCTTTGGGCTTTGGTCGTTTGTTTC
GAAACTGACCCTTGCCTTTGCGGCAGTCACTTTGTTGCCCCTGCTTGAACGGGCAGGCTTTCAAAGCGGGTCATTGCAAA
ACCCGCCGGAGGCCTTGGCACTGCTGACGCTGCTTTACGCGGCGGTGCCGTGTGCCTTGAAACTAATCGCCATCGCCTTG
CTGGTGATGACCGACCTGAAGGAGGCCTGA

Upstream 100 bases:

>100_bases
GCGTTCTGGCGCTCATCCACTGGCAGGCGCTCAAGCTCTGGATCAAGGGGGCCATCTATCGCGGACGTCCCAAACCGCCA
TCAAAAGAAGTGTCAAGATA

Downstream 100 bases:

>100_bases
AGAGTGAATATGTGGTTCTATATCCTGATCGGTGCGCTTCTCGCGTTCACCCTTGTCTGGATGCGGCGTACCTTCTGGAG
TTTCACCGCGCAGACCCCGG

Product: sodium:galactoside symporter family protein, putative

Products: NA

Alternate protein names: Facilitator Superfamily Transporter; Facilitator Transporter; Facilitator Superfamily Protein; Transporter Facilitator Family; Na+/Melibiose Symporter And Related Transporter; Na+/Melibiose Symporter And Related Transporter Protein; Symporter Protein; SodiumGalactoside Symporter Protein

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MQKTQRLPAYSLFAALLAAAGLPIYIHAPKFYLDEYGVSLAALGAVLFGLRLLDVVQDPLLGKLAEKTRTQRRTYVSIAA
LIMAVAMVALFAVPPLLPPLVWFGLCLTFVFSAFSFLTINFYAQGVIKADAMPGQGHLRLARWRESGALTGVCVASVAPV
ALGAAMNAPFAGFAIGFCVLGLAAVWAMREEWSTAGVAASTGFATVLKDPLARRLLLIAMVNAAPVAVSSTLFLFFVESK
LAAPGFEGPLLLLFFLSAALAAPVWSALAERFGPRNVLLLAMGLAIAAFGLTLTLGPGDWVLFALICLASGATLGADLTL
LPAIFASRMAQISPSASEGFGLWSFVSKLTLAFAAVTLLPLLERAGFQSGSLQNPPEALALLTLLYAAVPCALKLIAIAL
LVMTDLKEA

Sequences:

>Translated_409_residues
MQKTQRLPAYSLFAALLAAAGLPIYIHAPKFYLDEYGVSLAALGAVLFGLRLLDVVQDPLLGKLAEKTRTQRRTYVSIAA
LIMAVAMVALFAVPPLLPPLVWFGLCLTFVFSAFSFLTINFYAQGVIKADAMPGQGHLRLARWRESGALTGVCVASVAPV
ALGAAMNAPFAGFAIGFCVLGLAAVWAMREEWSTAGVAASTGFATVLKDPLARRLLLIAMVNAAPVAVSSTLFLFFVESK
LAAPGFEGPLLLLFFLSAALAAPVWSALAERFGPRNVLLLAMGLAIAAFGLTLTLGPGDWVLFALICLASGATLGADLTL
LPAIFASRMAQISPSASEGFGLWSFVSKLTLAFAAVTLLPLLERAGFQSGSLQNPPEALALLTLLYAAVPCALKLIAIAL
LVMTDLKEA
>Mature_409_residues
MQKTQRLPAYSLFAALLAAAGLPIYIHAPKFYLDEYGVSLAALGAVLFGLRLLDVVQDPLLGKLAEKTRTQRRTYVSIAA
LIMAVAMVALFAVPPLLPPLVWFGLCLTFVFSAFSFLTINFYAQGVIKADAMPGQGHLRLARWRESGALTGVCVASVAPV
ALGAAMNAPFAGFAIGFCVLGLAAVWAMREEWSTAGVAASTGFATVLKDPLARRLLLIAMVNAAPVAVSSTLFLFFVESK
LAAPGFEGPLLLLFFLSAALAAPVWSALAERFGPRNVLLLAMGLAIAAFGLTLTLGPGDWVLFALICLASGATLGADLTL
LPAIFASRMAQISPSASEGFGLWSFVSKLTLAFAAVTLLPLLERAGFQSGSLQNPPEALALLTLLYAAVPCALKLIAIAL
LVMTDLKEA

Specific function: Unknown

COG id: COG2211

COG function: function code G; Na+/melibiose symporter and related transporters

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786466, Length=413, Percent_Identity=24.6973365617433, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42961; Mature: 42961

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKTQRLPAYSLFAALLAAAGLPIYIHAPKFYLDEYGVSLAALGAVLFGLRLLDVVQDPL
CCCCCCCCHHHHHHHHHHHCCCCEEEECCHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHH
LGKLAEKTRTQRRTYVSIAALIMAVAMVALFAVPPLLPPLVWFGLCLTFVFSAFSFLTIN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
FYAQGVIKADAMPGQGHLRLARWRESGALTGVCVASVAPVALGAAMNAPFAGFAIGFCVL
HHHHHHEEECCCCCCCCEEHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
GLAAVWAMREEWSTAGVAASTGFATVLKDPLARRLLLIAMVNAAPVAVSSTLFLFFVESK
HHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
LAAPGFEGPLLLLFFLSAALAAPVWSALAERFGPRNVLLLAMGLAIAAFGLTLTLGPGDW
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEEECCCHH
VLFALICLASGATLGADLTLLPAIFASRMAQISPSASEGFGLWSFVSKLTLAFAAVTLLP
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LLERAGFQSGSLQNPPEALALLTLLYAAVPCALKLIAIALLVMTDLKEA
HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQKTQRLPAYSLFAALLAAAGLPIYIHAPKFYLDEYGVSLAALGAVLFGLRLLDVVQDPL
CCCCCCCCHHHHHHHHHHHCCCCEEEECCHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHH
LGKLAEKTRTQRRTYVSIAALIMAVAMVALFAVPPLLPPLVWFGLCLTFVFSAFSFLTIN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
FYAQGVIKADAMPGQGHLRLARWRESGALTGVCVASVAPVALGAAMNAPFAGFAIGFCVL
HHHHHHEEECCCCCCCCEEHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
GLAAVWAMREEWSTAGVAASTGFATVLKDPLARRLLLIAMVNAAPVAVSSTLFLFFVESK
HHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
LAAPGFEGPLLLLFFLSAALAAPVWSALAERFGPRNVLLLAMGLAIAAFGLTLTLGPGDW
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEEECCCHH
VLFALICLASGATLGADLTLLPAIFASRMAQISPSASEGFGLWSFVSKLTLAFAAVTLLP
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LLERAGFQSGSLQNPPEALALLTLLYAAVPCALKLIAIALLVMTDLKEA
HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA