Click here to switch to the map view.

The map label for this gene is hemD

Identifier: 110677860

GI number: 110677860

Start: 457543

End: 458247

Strand: Direct

Name: hemD

Synonym: RD1_0471

Alternate gene names: NA

Gene position: 457543-458247 (Clockwise)

Preceding gene: 110677855

Following gene: 110677861

Centisome position: 11.07

GC content: 55.6

Gene sequence:

>705_bases
GTGCAAAAGATTCCGCTCATCCTGACGCGACCGAAGGGGTCGAACGCCGTCTTCGAAGCGGACATTGCGCCAAAGGTGCG
CCAGCATGTGGATTTCATTCACAGCCCGCTGCTTGAAATCGTGCCGATTGATGGAGGGTATGACTCGACGGGCGCGGATC
ATGCAATTTTCACATCGGCCAATGGCGTGAAATATGCGCCCAAGGGAAACGGGCGACGCGCATTCTGTGTCGGTGAGAAA
ACGACGCAACTGGCACGTTCGCATGGATGGGACGCGGTGTTTGCCGGTGCGACCGTTTTGGCGCTGAAAGACCATGTTCT
GATCAACCGTCCCCAAGGTGAAATCCATCACTATTCAGGCGTTTTCGTGCGCGGCAATGTCGCCGAGGATTTGTCGGTTG
CGGGTTTGCGTGTCACGAATATCCCGCTTTATGAGCAGCGCCTTTTGCCCTTTTCGGCGCAGGCATTGTCGGTTTTGGAG
CGTAGAGCACCTGTTGTGGTGCCGCTTTTTTCACCGCGGACGGCTGCTCATTTCGCAGCAATCGCACCGGCGCATCCACA
GTTATATGTTGTCGCCATGAGCACGGCAGTCGCGGATTCCTGCAATGAAATGTCCCCTGCAAGGCTGATCATTGCGCGAG
AGCCCACTGCAAAATCCATGGCTCTCTGTGTGGAAAACCTTGTTCTGAACCACAGCTTGGGTTGA

Upstream 100 bases:

>100_bases
ACTGTCTGAGTGCGGCCCATTCAAGCCCCCGTTGCATGCCTTTGACTTGGCAGGTAACACCGAAGCGGGGCGCAAACAAT
GCCGGGGGGTGGCAAGACTG

Downstream 100 bases:

>100_bases
GGGGCCAGAGCCGCAGGGGTAAGGTTCCTTAACAGCACACGCCTGTGAAGATTCGAAAAGGTGGAAGATTTGGCAAAATC
ACGAAAGCCCAACAAGGCAA

Product: uroporphyrinogen-III synthase, putative

Products: NA

Alternate protein names: Uroporphyrinogen-III Synthase Domain Protein

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MQKIPLILTRPKGSNAVFEADIAPKVRQHVDFIHSPLLEIVPIDGGYDSTGADHAIFTSANGVKYAPKGNGRRAFCVGEK
TTQLARSHGWDAVFAGATVLALKDHVLINRPQGEIHHYSGVFVRGNVAEDLSVAGLRVTNIPLYEQRLLPFSAQALSVLE
RRAPVVVPLFSPRTAAHFAAIAPAHPQLYVVAMSTAVADSCNEMSPARLIIAREPTAKSMALCVENLVLNHSLG

Sequences:

>Translated_234_residues
MQKIPLILTRPKGSNAVFEADIAPKVRQHVDFIHSPLLEIVPIDGGYDSTGADHAIFTSANGVKYAPKGNGRRAFCVGEK
TTQLARSHGWDAVFAGATVLALKDHVLINRPQGEIHHYSGVFVRGNVAEDLSVAGLRVTNIPLYEQRLLPFSAQALSVLE
RRAPVVVPLFSPRTAAHFAAIAPAHPQLYVVAMSTAVADSCNEMSPARLIIAREPTAKSMALCVENLVLNHSLG
>Mature_234_residues
MQKIPLILTRPKGSNAVFEADIAPKVRQHVDFIHSPLLEIVPIDGGYDSTGADHAIFTSANGVKYAPKGNGRRAFCVGEK
TTQLARSHGWDAVFAGATVLALKDHVLINRPQGEIHHYSGVFVRGNVAEDLSVAGLRVTNIPLYEQRLLPFSAQALSVLE
RRAPVVVPLFSPRTAAHFAAIAPAHPQLYVVAMSTAVADSCNEMSPARLIIAREPTAKSMALCVENLVLNHSLG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25184; Mature: 25184

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKIPLILTRPKGSNAVFEADIAPKVRQHVDFIHSPLLEIVPIDGGYDSTGADHAIFTSA
CCCCCEEEECCCCCCCEEEECCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEECC
NGVKYAPKGNGRRAFCVGEKTTQLARSHGWDAVFAGATVLALKDHVLINRPQGEIHHYSG
CCEEECCCCCCCEEEEECCHHHHHHHHCCCCEEHHCEEEEEEECEEEEECCCCCEEEECC
VFVRGNVAEDLSVAGLRVTNIPLYEQRLLPFSAQALSVLERRAPVVVPLFSPRTAAHFAA
EEEECCCCCCCEECCEEEECCCHHHHHCCCCCHHHHHHHHHCCCEEEEECCCCCHHHEEE
IAPAHPQLYVVAMSTAVADSCNEMSPARLIIAREPTAKSMALCVENLVLNHSLG
ECCCCCCEEEEEEEHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQKIPLILTRPKGSNAVFEADIAPKVRQHVDFIHSPLLEIVPIDGGYDSTGADHAIFTSA
CCCCCEEEECCCCCCCEEEECCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEECC
NGVKYAPKGNGRRAFCVGEKTTQLARSHGWDAVFAGATVLALKDHVLINRPQGEIHHYSG
CCEEECCCCCCCEEEEECCHHHHHHHHCCCCEEHHCEEEEEEECEEEEECCCCCEEEECC
VFVRGNVAEDLSVAGLRVTNIPLYEQRLLPFSAQALSVLERRAPVVVPLFSPRTAAHFAA
EEEECCCCCCCEECCEEEECCCHHHHHCCCCCHHHHHHHHHCCCEEEEECCCCCHHHEEE
IAPAHPQLYVVAMSTAVADSCNEMSPARLIIAREPTAKSMALCVENLVLNHSLG
ECCCCCCEEEEEEEHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA