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The map label for this gene is senC [H]

Identifier: 110677850

GI number: 110677850

Start: 449092

End: 449715

Strand: Direct

Name: senC [H]

Synonym: RD1_0460

Alternate gene names: 110677850

Gene position: 449092-449715 (Clockwise)

Preceding gene: 110677838

Following gene: 110677851

Centisome position: 10.87

GC content: 57.69

Gene sequence:

>624_bases
ATGAATACGCGTTTCATCGCTTTGATTTCTGTCGCTGGCGTGGTCGGCGTTCTGGGCGGCCTGTGGCTTGCAACCCAGTC
GTCCAAAAGCGACGATCAGTTCGCGCAGTGCAGATCCAGCACCGTTGCAGGGGGCGCGGGTGCGTTGGGTGGGCCCTTTG
AACTGGTCAATGCGCAGGGCGAAACTGTCACCGATGCGGATGTCATCACCGAGCCTTCGATTCTTTACTTCGGCTATACA
TTCTGCCCGGATGTCTGCCCTCTGGACGTGGCGCGCAATGCCGTGGCTGTCGAGGTTCTGGAAGAGAACGGCATGTCCGT
GACGCCGGTATTCATCTCGATCGACCCCAAGCGGGACACGCCCGAAGTTGTTGGCGATTTCGCGGCCAACATGCATGAAC
GCATGATCGGTCTGACCGGGTCACCCGAGCAGGTCAAGGCGGCGAGCACCGCGTATCGCACGTATTACAAGGCGCATGAG
GGGGACGAAGACTATTACCTCGTGGATCATTCGACCTTCAGCTATCTCGTATTGCCGGAACACGGTTTTGTTGAGTTCTT
CCGCCGCGAAGTTGCACCGGAACAAATGGCCGAGACAGTGGCTTGTTTTGTCGAGAATGCCTGA

Upstream 100 bases:

>100_bases
ATCTGCCAAAATATCACCGGTTGTTGAGTTGCACTGTCCTTCAAACACGGTAGGACTGACCCTATCTAGGATCAACCCTT
GCCTTACGAAGGAGATGCTC

Downstream 100 bases:

>100_bases
CCTGTCATAGCCTTATCGGTTAAACTTATTTGACCTGCGGCATTTTGGGCCACATATATGTCTGAACGGTCAATAAGTGT
GCAGGAATGAGCGGATATGC

Product: SenC protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MNTRFIALISVAGVVGVLGGLWLATQSSKSDDQFAQCRSSTVAGGAGALGGPFELVNAQGETVTDADVITEPSILYFGYT
FCPDVCPLDVARNAVAVEVLEENGMSVTPVFISIDPKRDTPEVVGDFAANMHERMIGLTGSPEQVKAASTAYRTYYKAHE
GDEDYYLVDHSTFSYLVLPEHGFVEFFRREVAPEQMAETVACFVENA

Sequences:

>Translated_207_residues
MNTRFIALISVAGVVGVLGGLWLATQSSKSDDQFAQCRSSTVAGGAGALGGPFELVNAQGETVTDADVITEPSILYFGYT
FCPDVCPLDVARNAVAVEVLEENGMSVTPVFISIDPKRDTPEVVGDFAANMHERMIGLTGSPEQVKAASTAYRTYYKAHE
GDEDYYLVDHSTFSYLVLPEHGFVEFFRREVAPEQMAETVACFVENA
>Mature_207_residues
MNTRFIALISVAGVVGVLGGLWLATQSSKSDDQFAQCRSSTVAGGAGALGGPFELVNAQGETVTDADVITEPSILYFGYT
FCPDVCPLDVARNAVAVEVLEENGMSVTPVFISIDPKRDTPEVVGDFAANMHERMIGLTGSPEQVKAASTAYRTYYKAHE
GDEDYYLVDHSTFSYLVLPEHGFVEFFRREVAPEQMAETVACFVENA

Specific function: Involved in both aerobic respiration and photosynthesis gene expression [H]

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI281182727, Length=182, Percent_Identity=37.3626373626374, Blast_Score=127, Evalue=7e-30,
Organism=Homo sapiens, GI281182722, Length=182, Percent_Identity=37.3626373626374, Blast_Score=127, Evalue=7e-30,
Organism=Homo sapiens, GI281182716, Length=182, Percent_Identity=37.3626373626374, Blast_Score=127, Evalue=7e-30,
Organism=Homo sapiens, GI153791313, Length=182, Percent_Identity=37.3626373626374, Blast_Score=127, Evalue=7e-30,
Organism=Homo sapiens, GI4759068, Length=164, Percent_Identity=36.5853658536585, Blast_Score=122, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI17531419, Length=174, Percent_Identity=29.8850574712644, Blast_Score=107, Evalue=4e-24,
Organism=Saccharomyces cerevisiae, GI6319498, Length=215, Percent_Identity=32.093023255814, Blast_Score=125, Evalue=5e-30,
Organism=Saccharomyces cerevisiae, GI6319511, Length=169, Percent_Identity=34.9112426035503, Blast_Score=115, Evalue=7e-27,
Organism=Drosophila melanogaster, GI19920710, Length=203, Percent_Identity=33.4975369458128, Blast_Score=130, Evalue=7e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 22379; Mature: 22379

Theoretical pI: Translated: 4.12; Mature: 4.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTRFIALISVAGVVGVLGGLWLATQSSKSDDQFAQCRSSTVAGGAGALGGPFELVNAQG
CCCEEEHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCC
ETVTDADVITEPSILYFGYTFCPDVCPLDVARNAVAVEVLEENGMSVTPVFISIDPKRDT
CEECCHHHHCCCCEEEEEHHHCCCCCCHHHHCCEEEEEEECCCCCEEEEEEEEECCCCCC
PEVVGDFAANMHERMIGLTGSPEQVKAASTAYRTYYKAHEGDEDYYLVDHSTFSYLVLPE
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEECC
HGFVEFFRREVAPEQMAETVACFVENA
CHHHHHHHHHCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNTRFIALISVAGVVGVLGGLWLATQSSKSDDQFAQCRSSTVAGGAGALGGPFELVNAQG
CCCEEEHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCC
ETVTDADVITEPSILYFGYTFCPDVCPLDVARNAVAVEVLEENGMSVTPVFISIDPKRDT
CEECCHHHHCCCCEEEEEHHHCCCCCCHHHHCCEEEEEEECCCCCEEEEEEEEECCCCCC
PEVVGDFAANMHERMIGLTGSPEQVKAASTAYRTYYKAHEGDEDYYLVDHSTFSYLVLPE
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEECC
HGFVEFFRREVAPEQMAETVACFVENA
CHHHHHHHHHCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7592491 [H]