Click here to switch to the map view.

The map label for this gene is yhbH [C]

Identifier: 110677771

GI number: 110677771

Start: 364678

End: 365244

Strand: Direct

Name: yhbH [C]

Synonym: RD1_0372

Alternate gene names: 110677771

Gene position: 364678-365244 (Clockwise)

Preceding gene: 110677770

Following gene: 110677772

Centisome position: 8.82

GC content: 53.44

Gene sequence:

>567_bases
ATGCGGTATCAAATCAGCGGCAAACAGATCGATATTGGTGAAGCACTTCAGACCCACGTACGCGAGGAACTCAGCGAAGC
GGTCAAGAAGTATGCCGAGCGCCCGACCGAGGCCGTTGTTGTTTTCTCCAAATCGGCCCATGAGTTTGTTTGCGAGGCAA
CGGTACATCTGTCGACCGGGCTGACGGCACAGGCCAAGGCGCATCAGACGGAGATATACGCAGCATTTGATGCCTGTCGC
GAGAAAATGGAAAAGCAGCTGCGTCGCTACAAGCGTAGGTTGAAAGATCATCATAAAGATCGGGCCGAGCCTGTTGAAAT
CTACGGCGCGTCCTCATATATCCTCGCATCAGAAGTTGAGTCGGAGGATCAGGAGCCCGAAACGCTGCAACCGATCATTG
TGGCTGAAATGGAGACGAAGATCCCCTCTCTTTCCGTGGGCGAGGCCGTCATGCAAATGGAGCTTCAAGGTGCTCCTGTT
CTGGTGTTTCGCAACGAAGGCAAGGAAGGCGTGAATGTTGTATACCGTCGGGATGATGGGAACATCGGCTGGATCGATCC
TAAGTAG

Upstream 100 bases:

>100_bases
ACATCAACCTGAACGGTAGCCATTTTCCATAACCTGTCATCACTTAAGCACGTCGCGAAAGCGTGCGCTTTTGGCAGTGT
CTGACTTAAAAGGAGAACCC

Downstream 100 bases:

>100_bases
AGTATAACGGCGCAGGCTGCGTCAAAAAAGTGCGAGCGATATGGAATTTTCTGAACTCCTGAAGCCGGAGGCCGTAAAGG
TGCTGAACTCGGCCTCCAGC

Product: sigma-54 modulation protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MRYQISGKQIDIGEALQTHVREELSEAVKKYAERPTEAVVVFSKSAHEFVCEATVHLSTGLTAQAKAHQTEIYAAFDACR
EKMEKQLRRYKRRLKDHHKDRAEPVEIYGASSYILASEVESEDQEPETLQPIIVAEMETKIPSLSVGEAVMQMELQGAPV
LVFRNEGKEGVNVVYRRDDGNIGWIDPK

Sequences:

>Translated_188_residues
MRYQISGKQIDIGEALQTHVREELSEAVKKYAERPTEAVVVFSKSAHEFVCEATVHLSTGLTAQAKAHQTEIYAAFDACR
EKMEKQLRRYKRRLKDHHKDRAEPVEIYGASSYILASEVESEDQEPETLQPIIVAEMETKIPSLSVGEAVMQMELQGAPV
LVFRNEGKEGVNVVYRRDDGNIGWIDPK
>Mature_188_residues
MRYQISGKQIDIGEALQTHVREELSEAVKKYAERPTEAVVVFSKSAHEFVCEATVHLSTGLTAQAKAHQTEIYAAFDACR
EKMEKQLRRYKRRLKDHHKDRAEPVEIYGASSYILASEVESEDQEPETLQPIIVAEMETKIPSLSVGEAVMQMELQGAPV
LVFRNEGKEGVNVVYRRDDGNIGWIDPK

Specific function: Probably modulates the activity of sigma(54) (rpoN) [H]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma(54) modulation protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 21275; Mature: 21275

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYQISGKQIDIGEALQTHVREELSEAVKKYAERPTEAVVVFSKSAHEFVCEATVHLSTG
CEEECCCCEECHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHEEEECCC
LTAQAKAHQTEIYAAFDACREKMEKQLRRYKRRLKDHHKDRAEPVEIYGASSYILASEVE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEHHC
SEDQEPETLQPIIVAEMETKIPSLSVGEAVMQMELQGAPVLVFRNEGKEGVNVVYRRDDG
CCCCCCCHHCCEEEEEHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEECCC
NIGWIDPK
CEECCCCC
>Mature Secondary Structure
MRYQISGKQIDIGEALQTHVREELSEAVKKYAERPTEAVVVFSKSAHEFVCEATVHLSTG
CEEECCCCEECHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHEEEECCC
LTAQAKAHQTEIYAAFDACREKMEKQLRRYKRRLKDHHKDRAEPVEIYGASSYILASEVE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEHHC
SEDQEPETLQPIIVAEMETKIPSLSVGEAVMQMELQGAPVLVFRNEGKEGVNVVYRRDDG
CCCCCCCHHCCEEEEEHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEECCC
NIGWIDPK
CEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430; 3034856 [H]