| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is 110677755
Identifier: 110677755
GI number: 110677755
Start: 345594
End: 348371
Strand: Direct
Name: 110677755
Synonym: RD1_0355
Alternate gene names: NA
Gene position: 345594-348371 (Clockwise)
Preceding gene: 110677754
Following gene: 110677756
Centisome position: 8.36
GC content: 63.21
Gene sequence:
>2778_bases ATGACTGTTCTGGGTGGGATAGGGTTCACCGCTCCGTGGCTTTTGCTCGCGCTTCTGGCCTTGCCGATACTCTGGCTCAT TCTGCGGGCGATCCCGCCAGCGCCGATCAAGCGCATGTTTCCCGGTGTTGCCCTGCTCTTGGGCTTGCAGGATGATGAAA GCGTGTCAGACCGCACGCCGTGGTGGCTGTTGTTGCTGCGGATGCTGGCGGTTGCCGCGATCATTCTTGGCCTTGCCGGG CCGGTTCTGAACCCGAATGAGGATCAGGCACAGGGCGATGGCCCGCTGATGATCGTGCTGGATGGCAGCTGGGCCGGTGC CACCCGCTGGGACGAGCAGATGGAAGCCATTGATGCGCAGTTGAGCCGCGCCAGCCGTGCGGCCCGTCCGGTCGCATTCC TTGATCTGGCCAGACCCGAAGCCCCCGTTTTTCAGGCCGCCGATACATGGCGCAGCCGTTTACCCGGATTTACGCCCTCC GGATGGCAACCGGATGCCGCCCGCATCGCGGAGGCGACCTCGCTTTTGAACGAAACCGGTGCCTTCGATACGTTGTGGTT CAGTGATGGGCTGGATTATCCGGGCCGCGATGAGGCACTGGCGGCCTTTGAGGCGAAAGGCATGGTCGACGTATATCAAA CCGCCGCCAATGTCGTGGCCCTTGCCCCCGCCGGGTTTGAGGATGGCGCCATCCAGCTATCGGCGCTGCGCGCCACACCC GGCCCGGAGCGTGAGGTAGTGCTGCAGGTGCAGGGCCGTGACCCGGTGGGCAATGCGACATTGCTCGCCACGGCGACGGC CACCTTTCAGGCCGGAGAGACAAACGCGGACACCGCATTGACGCTGCCCGCCGAGTTGCGCGCGCGGATCACGCGGTTTG ACATTCAGGGCCAGCGTTCTGCCGGGGCGACGACACTGGCGGATGATGCGCTGCGCCGCCGTGAAATCGCGCTGATTGCC GGGCGCGAAGACCGCGAGGGGTTGGAGCTTTTATCCCCGCTGCATTATCTTGAACAAGCACTCGCCCCCAGTGCTGATCT GATCAAGGGCAGCCTGTCCGATATCCTGCCCGCCAACCCGGATGTGATCATTCTGGCGGACATTGCCACCCTGTCAGGTG GCGAGGCCGAGGATCTGGGCGAATGGCTGGATCAGGGCGGTATGCTGGTGCGCTTTGCCGGACCCCGCGTTGCCGCGAGC GATGTCAGCCGCGTGGACGAAGACCCGCTGATGCCCGTGCGGCTGCGCACCGGTGGTCGGACCGTCGGCGGTGCCATGAG TTGGGGCGAGCCCAAGACCCTCGCCCCGTTCCGCGAAAACTCACCGTTCTTTGGCCTGCCCATCCCGGATGATGTTCAGG TCACAAGCCAGATCATGGCGCAACCCGACCCGACACTCGCCGAACGCGTGATTGCGGAACTGACGGATGGCACGCCGCTG GTGACGCGCAAGACCCGTGAGCAAGGACAGATCGTGCTCTTTCACGTGACGGCCACGGCGGATTGGTCTACGTTGCCGCT TTCGGGTCTGTTTGTGCAGATGCTGGAACGTCTGGCCGTCGCCTCCTCGGGCACCCGGCCTGATGCGACCCAATTGGACG GCACAACATGGACACCAGAACAGGTTATGGATGGATTTGGAACACTTTCGGACGCGGGCAATCTGCCCGGTGTGCCCGGC CCCGACCTTGTCACGGCCCCGCCCAGCCCCGAGATGCAGCCCGGCATCTATGCCTCCGGTGATCGTCGCCTCGCGCGCAA CGTCGTGACGGATGAAACCGCGCTTGAACCCGCCGTCTGGCCTGCGCGCATTCCCGTGCGCGGGTTTTCCGTGCCACCCG AACAACCCATCGCGGGTTTGCTGCTGAGCCTTGCGCTGCTGACCCTCATTGCCGATGTGATCGCATCACTGGCCCTGACG GGGCGTCTAAAGGGCGCGGCCGGACGCACCGCAGCCATTGTTATCGCCTTGGGCATACCGCTCGCCATACCCTCGCAAAG CGCTGCGCAAAGCAGTGAACTTGACGAATTTGCCCTGCAATCCACCGAAGAGATGGTGCTGGCCTATGTCATCACCAGCG ATCAAAGCGTCGATGATCTGTCGCGCGCCGGGCTGTTCGGATTGTCGCAAACACTGACGTTCCGCACCTCGGTCGAACCT GCAAGCCCCGTCGGTGTAGACCTTGAACGCGATGAATTGGCATTCTTCCCGATACTCTACTGGCCGATCACGGTGGAACA GCCCCGCCCCTCGTCAGAGGCCTACGCCAAGCTGAACGCCTACCTGCGCTCGGGCGGTCTGATCCTGTTTGACACCAAGG ATGCGGATATTGCCCGTTTTGGCACGTCCAGCCCGAACGGTCGCAAACTGCGCGATCTGGCAGCACCACTCGATATACCG CCGCTGGAACCGCTGCCTGCGGATCACGTTCTGACCCGCACGTTCTACCTGTTGCAGGACTATCCGGGACGCCACACCAG CCGCGATGTCTGGGTCGAAGCGGCCCCTCCGGATGCGGAACAGATCGAAGGGATGCCGTTTCGCAACCTCAATGACGGTG TGACACCCGTCGTGATCGGTGGCAACGACTGGGCCGCGGCCTGGGCCATGGCGGAGAACGGCGCACCTTTGGTGCCGATC GGGCGCGGTTTTACCGGCGAGCGGCAACGGGAACTGGCCTACCGCTTTGGCGTAAACCTCGTGATGCATGTGCTGACCGG CAATTACAAATCAGATCAGGTACATGTACCCGCACTGCTCGATAGGTTGGGCCAATGA
Upstream 100 bases:
>100_bases GCACTGTGACGGGCTGGCAATACGGGCAGCATCATACGAATATGTCTGCGCAATCGGCCTTGCTGTGGCTTTACTCTGCG CTGGATACAGGTGGGTTTCG
Downstream 100 bases:
>100_bases CCGGACAGATGATATTTGACCCGCTGATCCCATGGACACTTTTGGCGGCGATTGCCGTCCTTGCCATGGCGGGTGTGGTT TTTGCCGCCCTGCGCGGGCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 925; Mature: 924
Protein sequence:
>925_residues MTVLGGIGFTAPWLLLALLALPILWLILRAIPPAPIKRMFPGVALLLGLQDDESVSDRTPWWLLLLRMLAVAAIILGLAG PVLNPNEDQAQGDGPLMIVLDGSWAGATRWDEQMEAIDAQLSRASRAARPVAFLDLARPEAPVFQAADTWRSRLPGFTPS GWQPDAARIAEATSLLNETGAFDTLWFSDGLDYPGRDEALAAFEAKGMVDVYQTAANVVALAPAGFEDGAIQLSALRATP GPEREVVLQVQGRDPVGNATLLATATATFQAGETNADTALTLPAELRARITRFDIQGQRSAGATTLADDALRRREIALIA GREDREGLELLSPLHYLEQALAPSADLIKGSLSDILPANPDVIILADIATLSGGEAEDLGEWLDQGGMLVRFAGPRVAAS DVSRVDEDPLMPVRLRTGGRTVGGAMSWGEPKTLAPFRENSPFFGLPIPDDVQVTSQIMAQPDPTLAERVIAELTDGTPL VTRKTREQGQIVLFHVTATADWSTLPLSGLFVQMLERLAVASSGTRPDATQLDGTTWTPEQVMDGFGTLSDAGNLPGVPG PDLVTAPPSPEMQPGIYASGDRRLARNVVTDETALEPAVWPARIPVRGFSVPPEQPIAGLLLSLALLTLIADVIASLALT GRLKGAAGRTAAIVIALGIPLAIPSQSAAQSSELDEFALQSTEEMVLAYVITSDQSVDDLSRAGLFGLSQTLTFRTSVEP ASPVGVDLERDELAFFPILYWPITVEQPRPSSEAYAKLNAYLRSGGLILFDTKDADIARFGTSSPNGRKLRDLAAPLDIP PLEPLPADHVLTRTFYLLQDYPGRHTSRDVWVEAAPPDAEQIEGMPFRNLNDGVTPVVIGGNDWAAAWAMAENGAPLVPI GRGFTGERQRELAYRFGVNLVMHVLTGNYKSDQVHVPALLDRLGQ
Sequences:
>Translated_925_residues MTVLGGIGFTAPWLLLALLALPILWLILRAIPPAPIKRMFPGVALLLGLQDDESVSDRTPWWLLLLRMLAVAAIILGLAG PVLNPNEDQAQGDGPLMIVLDGSWAGATRWDEQMEAIDAQLSRASRAARPVAFLDLARPEAPVFQAADTWRSRLPGFTPS GWQPDAARIAEATSLLNETGAFDTLWFSDGLDYPGRDEALAAFEAKGMVDVYQTAANVVALAPAGFEDGAIQLSALRATP GPEREVVLQVQGRDPVGNATLLATATATFQAGETNADTALTLPAELRARITRFDIQGQRSAGATTLADDALRRREIALIA GREDREGLELLSPLHYLEQALAPSADLIKGSLSDILPANPDVIILADIATLSGGEAEDLGEWLDQGGMLVRFAGPRVAAS DVSRVDEDPLMPVRLRTGGRTVGGAMSWGEPKTLAPFRENSPFFGLPIPDDVQVTSQIMAQPDPTLAERVIAELTDGTPL VTRKTREQGQIVLFHVTATADWSTLPLSGLFVQMLERLAVASSGTRPDATQLDGTTWTPEQVMDGFGTLSDAGNLPGVPG PDLVTAPPSPEMQPGIYASGDRRLARNVVTDETALEPAVWPARIPVRGFSVPPEQPIAGLLLSLALLTLIADVIASLALT GRLKGAAGRTAAIVIALGIPLAIPSQSAAQSSELDEFALQSTEEMVLAYVITSDQSVDDLSRAGLFGLSQTLTFRTSVEP ASPVGVDLERDELAFFPILYWPITVEQPRPSSEAYAKLNAYLRSGGLILFDTKDADIARFGTSSPNGRKLRDLAAPLDIP PLEPLPADHVLTRTFYLLQDYPGRHTSRDVWVEAAPPDAEQIEGMPFRNLNDGVTPVVIGGNDWAAAWAMAENGAPLVPI GRGFTGERQRELAYRFGVNLVMHVLTGNYKSDQVHVPALLDRLGQ >Mature_924_residues TVLGGIGFTAPWLLLALLALPILWLILRAIPPAPIKRMFPGVALLLGLQDDESVSDRTPWWLLLLRMLAVAAIILGLAGP VLNPNEDQAQGDGPLMIVLDGSWAGATRWDEQMEAIDAQLSRASRAARPVAFLDLARPEAPVFQAADTWRSRLPGFTPSG WQPDAARIAEATSLLNETGAFDTLWFSDGLDYPGRDEALAAFEAKGMVDVYQTAANVVALAPAGFEDGAIQLSALRATPG PEREVVLQVQGRDPVGNATLLATATATFQAGETNADTALTLPAELRARITRFDIQGQRSAGATTLADDALRRREIALIAG REDREGLELLSPLHYLEQALAPSADLIKGSLSDILPANPDVIILADIATLSGGEAEDLGEWLDQGGMLVRFAGPRVAASD VSRVDEDPLMPVRLRTGGRTVGGAMSWGEPKTLAPFRENSPFFGLPIPDDVQVTSQIMAQPDPTLAERVIAELTDGTPLV TRKTREQGQIVLFHVTATADWSTLPLSGLFVQMLERLAVASSGTRPDATQLDGTTWTPEQVMDGFGTLSDAGNLPGVPGP DLVTAPPSPEMQPGIYASGDRRLARNVVTDETALEPAVWPARIPVRGFSVPPEQPIAGLLLSLALLTLIADVIASLALTG RLKGAAGRTAAIVIALGIPLAIPSQSAAQSSELDEFALQSTEEMVLAYVITSDQSVDDLSRAGLFGLSQTLTFRTSVEPA SPVGVDLERDELAFFPILYWPITVEQPRPSSEAYAKLNAYLRSGGLILFDTKDADIARFGTSSPNGRKLRDLAAPLDIPP LEPLPADHVLTRTFYLLQDYPGRHTSRDVWVEAAPPDAEQIEGMPFRNLNDGVTPVVIGGNDWAAAWAMAENGAPLVPIG RGFTGERQRELAYRFGVNLVMHVLTGNYKSDQVHVPALLDRLGQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 98971; Mature: 98840
Theoretical pI: Translated: 4.31; Mature: 4.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVLGGIGFTAPWLLLALLALPILWLILRAIPPAPIKRMFPGVALLLGLQDDESVSDRTP CEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCEEEEEECCCCCCCCCCCC WWLLLLRMLAVAAIILGLAGPVLNPNEDQAQGDGPLMIVLDGSWAGATRWDEQMEAIDAQ HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH LSRASRAARPVAFLDLARPEAPVFQAADTWRSRLPGFTPSGWQPDAARIAEATSLLNETG HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC AFDTLWFSDGLDYPGRDEALAAFEAKGMVDVYQTAANVVALAPAGFEDGAIQLSALRATP CCEEEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHCEEEECCCCCCCCCEEEEEEECCC GPEREVVLQVQGRDPVGNATLLATATATFQAGETNADTALTLPAELRARITRFDIQGQRS CCCCEEEEEEECCCCCCCEEEEEEEEEEEECCCCCCCCEEECCHHHHHHHHHEECCCCCC AGATTLADDALRRREIALIAGREDREGLELLSPLHYLEQALAPSADLIKGSLSDILPANP CCCCHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCHHHCCCCCC DVIILADIATLSGGEAEDLGEWLDQGGMLVRFAGPRVAASDVSRVDEDPLMPVRLRTGGR CEEEEEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCCCCEEEEECCCC TVGGAMSWGEPKTLAPFRENSPFFGLPIPDDVQVTSQIMAQPDPTLAERVIAELTDGTPL EECCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCE VTRKTREQGQIVLFHVTATADWSTLPLSGLFVQMLERLAVASSGTRPDATQLDGTTWTPE EEECCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH QVMDGFGTLSDAGNLPGVPGPDLVTAPPSPEMQPGIYASGDRRLARNVVTDETALEPAVW HHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEECCCHHHHHHHHCCCHHCCCCCC PARIPVRGFSVPPEQPIAGLLLSLALLTLIADVIASLALTGRLKGAAGRTAAIVIALGIP CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCC LAIPSQSAAQSSELDEFALQSTEEMVLAYVITSDQSVDDLSRAGLFGLSQTLTFRTSVEP EECCCCHHHHHHHHHHHHHHCHHHEEEEEEEECCCCHHHHHHHHHHCCHHEEEEEECCCC ASPVGVDLERDELAFFPILYWPITVEQPRPSSEAYAKLNAYLRSGGLILFDTKDADIARF CCCCCCCCCCCCEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHCC GTSSPNGRKLRDLAAPLDIPPLEPLPADHVLTRTFYLLQDYPGRHTSRDVWVEAAPPDAE CCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHH QIEGMPFRNLNDGVTPVVIGGNDWAAAWAMAENGAPLVPIGRGFTGERQRELAYRFGVNL HHCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHH VMHVLTGNYKSDQVHVPALLDRLGQ HHHHHHCCCCCCCEEHHHHHHHHCC >Mature Secondary Structure TVLGGIGFTAPWLLLALLALPILWLILRAIPPAPIKRMFPGVALLLGLQDDESVSDRTP EEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCEEEEEECCCCCCCCCCCC WWLLLLRMLAVAAIILGLAGPVLNPNEDQAQGDGPLMIVLDGSWAGATRWDEQMEAIDAQ HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH LSRASRAARPVAFLDLARPEAPVFQAADTWRSRLPGFTPSGWQPDAARIAEATSLLNETG HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC AFDTLWFSDGLDYPGRDEALAAFEAKGMVDVYQTAANVVALAPAGFEDGAIQLSALRATP CCEEEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHCEEEECCCCCCCCCEEEEEEECCC GPEREVVLQVQGRDPVGNATLLATATATFQAGETNADTALTLPAELRARITRFDIQGQRS CCCCEEEEEEECCCCCCCEEEEEEEEEEEECCCCCCCCEEECCHHHHHHHHHEECCCCCC AGATTLADDALRRREIALIAGREDREGLELLSPLHYLEQALAPSADLIKGSLSDILPANP CCCCHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCHHHCCCCCC DVIILADIATLSGGEAEDLGEWLDQGGMLVRFAGPRVAASDVSRVDEDPLMPVRLRTGGR CEEEEEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCCCCEEEEECCCC TVGGAMSWGEPKTLAPFRENSPFFGLPIPDDVQVTSQIMAQPDPTLAERVIAELTDGTPL EECCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCE VTRKTREQGQIVLFHVTATADWSTLPLSGLFVQMLERLAVASSGTRPDATQLDGTTWTPE EEECCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH QVMDGFGTLSDAGNLPGVPGPDLVTAPPSPEMQPGIYASGDRRLARNVVTDETALEPAVW HHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEECCCHHHHHHHHCCCHHCCCCCC PARIPVRGFSVPPEQPIAGLLLSLALLTLIADVIASLALTGRLKGAAGRTAAIVIALGIP CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCC LAIPSQSAAQSSELDEFALQSTEEMVLAYVITSDQSVDDLSRAGLFGLSQTLTFRTSVEP EECCCCHHHHHHHHHHHHHHCHHHEEEEEEEECCCCHHHHHHHHHHCCHHEEEEEECCCC ASPVGVDLERDELAFFPILYWPITVEQPRPSSEAYAKLNAYLRSGGLILFDTKDADIARF CCCCCCCCCCCCEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHCC GTSSPNGRKLRDLAAPLDIPPLEPLPADHVLTRTFYLLQDYPGRHTSRDVWVEAAPPDAE CCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHH QIEGMPFRNLNDGVTPVVIGGNDWAAAWAMAENGAPLVPIGRGFTGERQRELAYRFGVNL HHCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHH VMHVLTGNYKSDQVHVPALLDRLGQ HHHHHHCCCCCCCEEHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA