Definition Roseobacter denitrificans OCh 114, complete genome.
Accession NC_008209
Length 4,133,097

Click here to switch to the map view.

The map label for this gene is 110677755

Identifier: 110677755

GI number: 110677755

Start: 345594

End: 348371

Strand: Direct

Name: 110677755

Synonym: RD1_0355

Alternate gene names: NA

Gene position: 345594-348371 (Clockwise)

Preceding gene: 110677754

Following gene: 110677756

Centisome position: 8.36

GC content: 63.21

Gene sequence:

>2778_bases
ATGACTGTTCTGGGTGGGATAGGGTTCACCGCTCCGTGGCTTTTGCTCGCGCTTCTGGCCTTGCCGATACTCTGGCTCAT
TCTGCGGGCGATCCCGCCAGCGCCGATCAAGCGCATGTTTCCCGGTGTTGCCCTGCTCTTGGGCTTGCAGGATGATGAAA
GCGTGTCAGACCGCACGCCGTGGTGGCTGTTGTTGCTGCGGATGCTGGCGGTTGCCGCGATCATTCTTGGCCTTGCCGGG
CCGGTTCTGAACCCGAATGAGGATCAGGCACAGGGCGATGGCCCGCTGATGATCGTGCTGGATGGCAGCTGGGCCGGTGC
CACCCGCTGGGACGAGCAGATGGAAGCCATTGATGCGCAGTTGAGCCGCGCCAGCCGTGCGGCCCGTCCGGTCGCATTCC
TTGATCTGGCCAGACCCGAAGCCCCCGTTTTTCAGGCCGCCGATACATGGCGCAGCCGTTTACCCGGATTTACGCCCTCC
GGATGGCAACCGGATGCCGCCCGCATCGCGGAGGCGACCTCGCTTTTGAACGAAACCGGTGCCTTCGATACGTTGTGGTT
CAGTGATGGGCTGGATTATCCGGGCCGCGATGAGGCACTGGCGGCCTTTGAGGCGAAAGGCATGGTCGACGTATATCAAA
CCGCCGCCAATGTCGTGGCCCTTGCCCCCGCCGGGTTTGAGGATGGCGCCATCCAGCTATCGGCGCTGCGCGCCACACCC
GGCCCGGAGCGTGAGGTAGTGCTGCAGGTGCAGGGCCGTGACCCGGTGGGCAATGCGACATTGCTCGCCACGGCGACGGC
CACCTTTCAGGCCGGAGAGACAAACGCGGACACCGCATTGACGCTGCCCGCCGAGTTGCGCGCGCGGATCACGCGGTTTG
ACATTCAGGGCCAGCGTTCTGCCGGGGCGACGACACTGGCGGATGATGCGCTGCGCCGCCGTGAAATCGCGCTGATTGCC
GGGCGCGAAGACCGCGAGGGGTTGGAGCTTTTATCCCCGCTGCATTATCTTGAACAAGCACTCGCCCCCAGTGCTGATCT
GATCAAGGGCAGCCTGTCCGATATCCTGCCCGCCAACCCGGATGTGATCATTCTGGCGGACATTGCCACCCTGTCAGGTG
GCGAGGCCGAGGATCTGGGCGAATGGCTGGATCAGGGCGGTATGCTGGTGCGCTTTGCCGGACCCCGCGTTGCCGCGAGC
GATGTCAGCCGCGTGGACGAAGACCCGCTGATGCCCGTGCGGCTGCGCACCGGTGGTCGGACCGTCGGCGGTGCCATGAG
TTGGGGCGAGCCCAAGACCCTCGCCCCGTTCCGCGAAAACTCACCGTTCTTTGGCCTGCCCATCCCGGATGATGTTCAGG
TCACAAGCCAGATCATGGCGCAACCCGACCCGACACTCGCCGAACGCGTGATTGCGGAACTGACGGATGGCACGCCGCTG
GTGACGCGCAAGACCCGTGAGCAAGGACAGATCGTGCTCTTTCACGTGACGGCCACGGCGGATTGGTCTACGTTGCCGCT
TTCGGGTCTGTTTGTGCAGATGCTGGAACGTCTGGCCGTCGCCTCCTCGGGCACCCGGCCTGATGCGACCCAATTGGACG
GCACAACATGGACACCAGAACAGGTTATGGATGGATTTGGAACACTTTCGGACGCGGGCAATCTGCCCGGTGTGCCCGGC
CCCGACCTTGTCACGGCCCCGCCCAGCCCCGAGATGCAGCCCGGCATCTATGCCTCCGGTGATCGTCGCCTCGCGCGCAA
CGTCGTGACGGATGAAACCGCGCTTGAACCCGCCGTCTGGCCTGCGCGCATTCCCGTGCGCGGGTTTTCCGTGCCACCCG
AACAACCCATCGCGGGTTTGCTGCTGAGCCTTGCGCTGCTGACCCTCATTGCCGATGTGATCGCATCACTGGCCCTGACG
GGGCGTCTAAAGGGCGCGGCCGGACGCACCGCAGCCATTGTTATCGCCTTGGGCATACCGCTCGCCATACCCTCGCAAAG
CGCTGCGCAAAGCAGTGAACTTGACGAATTTGCCCTGCAATCCACCGAAGAGATGGTGCTGGCCTATGTCATCACCAGCG
ATCAAAGCGTCGATGATCTGTCGCGCGCCGGGCTGTTCGGATTGTCGCAAACACTGACGTTCCGCACCTCGGTCGAACCT
GCAAGCCCCGTCGGTGTAGACCTTGAACGCGATGAATTGGCATTCTTCCCGATACTCTACTGGCCGATCACGGTGGAACA
GCCCCGCCCCTCGTCAGAGGCCTACGCCAAGCTGAACGCCTACCTGCGCTCGGGCGGTCTGATCCTGTTTGACACCAAGG
ATGCGGATATTGCCCGTTTTGGCACGTCCAGCCCGAACGGTCGCAAACTGCGCGATCTGGCAGCACCACTCGATATACCG
CCGCTGGAACCGCTGCCTGCGGATCACGTTCTGACCCGCACGTTCTACCTGTTGCAGGACTATCCGGGACGCCACACCAG
CCGCGATGTCTGGGTCGAAGCGGCCCCTCCGGATGCGGAACAGATCGAAGGGATGCCGTTTCGCAACCTCAATGACGGTG
TGACACCCGTCGTGATCGGTGGCAACGACTGGGCCGCGGCCTGGGCCATGGCGGAGAACGGCGCACCTTTGGTGCCGATC
GGGCGCGGTTTTACCGGCGAGCGGCAACGGGAACTGGCCTACCGCTTTGGCGTAAACCTCGTGATGCATGTGCTGACCGG
CAATTACAAATCAGATCAGGTACATGTACCCGCACTGCTCGATAGGTTGGGCCAATGA

Upstream 100 bases:

>100_bases
GCACTGTGACGGGCTGGCAATACGGGCAGCATCATACGAATATGTCTGCGCAATCGGCCTTGCTGTGGCTTTACTCTGCG
CTGGATACAGGTGGGTTTCG

Downstream 100 bases:

>100_bases
CCGGACAGATGATATTTGACCCGCTGATCCCATGGACACTTTTGGCGGCGATTGCCGTCCTTGCCATGGCGGGTGTGGTT
TTTGCCGCCCTGCGCGGGCT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 925; Mature: 924

Protein sequence:

>925_residues
MTVLGGIGFTAPWLLLALLALPILWLILRAIPPAPIKRMFPGVALLLGLQDDESVSDRTPWWLLLLRMLAVAAIILGLAG
PVLNPNEDQAQGDGPLMIVLDGSWAGATRWDEQMEAIDAQLSRASRAARPVAFLDLARPEAPVFQAADTWRSRLPGFTPS
GWQPDAARIAEATSLLNETGAFDTLWFSDGLDYPGRDEALAAFEAKGMVDVYQTAANVVALAPAGFEDGAIQLSALRATP
GPEREVVLQVQGRDPVGNATLLATATATFQAGETNADTALTLPAELRARITRFDIQGQRSAGATTLADDALRRREIALIA
GREDREGLELLSPLHYLEQALAPSADLIKGSLSDILPANPDVIILADIATLSGGEAEDLGEWLDQGGMLVRFAGPRVAAS
DVSRVDEDPLMPVRLRTGGRTVGGAMSWGEPKTLAPFRENSPFFGLPIPDDVQVTSQIMAQPDPTLAERVIAELTDGTPL
VTRKTREQGQIVLFHVTATADWSTLPLSGLFVQMLERLAVASSGTRPDATQLDGTTWTPEQVMDGFGTLSDAGNLPGVPG
PDLVTAPPSPEMQPGIYASGDRRLARNVVTDETALEPAVWPARIPVRGFSVPPEQPIAGLLLSLALLTLIADVIASLALT
GRLKGAAGRTAAIVIALGIPLAIPSQSAAQSSELDEFALQSTEEMVLAYVITSDQSVDDLSRAGLFGLSQTLTFRTSVEP
ASPVGVDLERDELAFFPILYWPITVEQPRPSSEAYAKLNAYLRSGGLILFDTKDADIARFGTSSPNGRKLRDLAAPLDIP
PLEPLPADHVLTRTFYLLQDYPGRHTSRDVWVEAAPPDAEQIEGMPFRNLNDGVTPVVIGGNDWAAAWAMAENGAPLVPI
GRGFTGERQRELAYRFGVNLVMHVLTGNYKSDQVHVPALLDRLGQ

Sequences:

>Translated_925_residues
MTVLGGIGFTAPWLLLALLALPILWLILRAIPPAPIKRMFPGVALLLGLQDDESVSDRTPWWLLLLRMLAVAAIILGLAG
PVLNPNEDQAQGDGPLMIVLDGSWAGATRWDEQMEAIDAQLSRASRAARPVAFLDLARPEAPVFQAADTWRSRLPGFTPS
GWQPDAARIAEATSLLNETGAFDTLWFSDGLDYPGRDEALAAFEAKGMVDVYQTAANVVALAPAGFEDGAIQLSALRATP
GPEREVVLQVQGRDPVGNATLLATATATFQAGETNADTALTLPAELRARITRFDIQGQRSAGATTLADDALRRREIALIA
GREDREGLELLSPLHYLEQALAPSADLIKGSLSDILPANPDVIILADIATLSGGEAEDLGEWLDQGGMLVRFAGPRVAAS
DVSRVDEDPLMPVRLRTGGRTVGGAMSWGEPKTLAPFRENSPFFGLPIPDDVQVTSQIMAQPDPTLAERVIAELTDGTPL
VTRKTREQGQIVLFHVTATADWSTLPLSGLFVQMLERLAVASSGTRPDATQLDGTTWTPEQVMDGFGTLSDAGNLPGVPG
PDLVTAPPSPEMQPGIYASGDRRLARNVVTDETALEPAVWPARIPVRGFSVPPEQPIAGLLLSLALLTLIADVIASLALT
GRLKGAAGRTAAIVIALGIPLAIPSQSAAQSSELDEFALQSTEEMVLAYVITSDQSVDDLSRAGLFGLSQTLTFRTSVEP
ASPVGVDLERDELAFFPILYWPITVEQPRPSSEAYAKLNAYLRSGGLILFDTKDADIARFGTSSPNGRKLRDLAAPLDIP
PLEPLPADHVLTRTFYLLQDYPGRHTSRDVWVEAAPPDAEQIEGMPFRNLNDGVTPVVIGGNDWAAAWAMAENGAPLVPI
GRGFTGERQRELAYRFGVNLVMHVLTGNYKSDQVHVPALLDRLGQ
>Mature_924_residues
TVLGGIGFTAPWLLLALLALPILWLILRAIPPAPIKRMFPGVALLLGLQDDESVSDRTPWWLLLLRMLAVAAIILGLAGP
VLNPNEDQAQGDGPLMIVLDGSWAGATRWDEQMEAIDAQLSRASRAARPVAFLDLARPEAPVFQAADTWRSRLPGFTPSG
WQPDAARIAEATSLLNETGAFDTLWFSDGLDYPGRDEALAAFEAKGMVDVYQTAANVVALAPAGFEDGAIQLSALRATPG
PEREVVLQVQGRDPVGNATLLATATATFQAGETNADTALTLPAELRARITRFDIQGQRSAGATTLADDALRRREIALIAG
REDREGLELLSPLHYLEQALAPSADLIKGSLSDILPANPDVIILADIATLSGGEAEDLGEWLDQGGMLVRFAGPRVAASD
VSRVDEDPLMPVRLRTGGRTVGGAMSWGEPKTLAPFRENSPFFGLPIPDDVQVTSQIMAQPDPTLAERVIAELTDGTPLV
TRKTREQGQIVLFHVTATADWSTLPLSGLFVQMLERLAVASSGTRPDATQLDGTTWTPEQVMDGFGTLSDAGNLPGVPGP
DLVTAPPSPEMQPGIYASGDRRLARNVVTDETALEPAVWPARIPVRGFSVPPEQPIAGLLLSLALLTLIADVIASLALTG
RLKGAAGRTAAIVIALGIPLAIPSQSAAQSSELDEFALQSTEEMVLAYVITSDQSVDDLSRAGLFGLSQTLTFRTSVEPA
SPVGVDLERDELAFFPILYWPITVEQPRPSSEAYAKLNAYLRSGGLILFDTKDADIARFGTSSPNGRKLRDLAAPLDIPP
LEPLPADHVLTRTFYLLQDYPGRHTSRDVWVEAAPPDAEQIEGMPFRNLNDGVTPVVIGGNDWAAAWAMAENGAPLVPIG
RGFTGERQRELAYRFGVNLVMHVLTGNYKSDQVHVPALLDRLGQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 98971; Mature: 98840

Theoretical pI: Translated: 4.31; Mature: 4.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVLGGIGFTAPWLLLALLALPILWLILRAIPPAPIKRMFPGVALLLGLQDDESVSDRTP
CEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCEEEEEECCCCCCCCCCCC
WWLLLLRMLAVAAIILGLAGPVLNPNEDQAQGDGPLMIVLDGSWAGATRWDEQMEAIDAQ
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
LSRASRAARPVAFLDLARPEAPVFQAADTWRSRLPGFTPSGWQPDAARIAEATSLLNETG
HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC
AFDTLWFSDGLDYPGRDEALAAFEAKGMVDVYQTAANVVALAPAGFEDGAIQLSALRATP
CCEEEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHCEEEECCCCCCCCCEEEEEEECCC
GPEREVVLQVQGRDPVGNATLLATATATFQAGETNADTALTLPAELRARITRFDIQGQRS
CCCCEEEEEEECCCCCCCEEEEEEEEEEEECCCCCCCCEEECCHHHHHHHHHEECCCCCC
AGATTLADDALRRREIALIAGREDREGLELLSPLHYLEQALAPSADLIKGSLSDILPANP
CCCCHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCHHHCCCCCC
DVIILADIATLSGGEAEDLGEWLDQGGMLVRFAGPRVAASDVSRVDEDPLMPVRLRTGGR
CEEEEEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCCCCEEEEECCCC
TVGGAMSWGEPKTLAPFRENSPFFGLPIPDDVQVTSQIMAQPDPTLAERVIAELTDGTPL
EECCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCE
VTRKTREQGQIVLFHVTATADWSTLPLSGLFVQMLERLAVASSGTRPDATQLDGTTWTPE
EEECCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
QVMDGFGTLSDAGNLPGVPGPDLVTAPPSPEMQPGIYASGDRRLARNVVTDETALEPAVW
HHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEECCCHHHHHHHHCCCHHCCCCCC
PARIPVRGFSVPPEQPIAGLLLSLALLTLIADVIASLALTGRLKGAAGRTAAIVIALGIP
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCC
LAIPSQSAAQSSELDEFALQSTEEMVLAYVITSDQSVDDLSRAGLFGLSQTLTFRTSVEP
EECCCCHHHHHHHHHHHHHHCHHHEEEEEEEECCCCHHHHHHHHHHCCHHEEEEEECCCC
ASPVGVDLERDELAFFPILYWPITVEQPRPSSEAYAKLNAYLRSGGLILFDTKDADIARF
CCCCCCCCCCCCEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHCC
GTSSPNGRKLRDLAAPLDIPPLEPLPADHVLTRTFYLLQDYPGRHTSRDVWVEAAPPDAE
CCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHH
QIEGMPFRNLNDGVTPVVIGGNDWAAAWAMAENGAPLVPIGRGFTGERQRELAYRFGVNL
HHCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHH
VMHVLTGNYKSDQVHVPALLDRLGQ
HHHHHHCCCCCCCEEHHHHHHHHCC
>Mature Secondary Structure 
TVLGGIGFTAPWLLLALLALPILWLILRAIPPAPIKRMFPGVALLLGLQDDESVSDRTP
EEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCEEEEEECCCCCCCCCCCC
WWLLLLRMLAVAAIILGLAGPVLNPNEDQAQGDGPLMIVLDGSWAGATRWDEQMEAIDAQ
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
LSRASRAARPVAFLDLARPEAPVFQAADTWRSRLPGFTPSGWQPDAARIAEATSLLNETG
HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC
AFDTLWFSDGLDYPGRDEALAAFEAKGMVDVYQTAANVVALAPAGFEDGAIQLSALRATP
CCEEEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHCEEEECCCCCCCCCEEEEEEECCC
GPEREVVLQVQGRDPVGNATLLATATATFQAGETNADTALTLPAELRARITRFDIQGQRS
CCCCEEEEEEECCCCCCCEEEEEEEEEEEECCCCCCCCEEECCHHHHHHHHHEECCCCCC
AGATTLADDALRRREIALIAGREDREGLELLSPLHYLEQALAPSADLIKGSLSDILPANP
CCCCHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCHHHCCCCCC
DVIILADIATLSGGEAEDLGEWLDQGGMLVRFAGPRVAASDVSRVDEDPLMPVRLRTGGR
CEEEEEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCCCCEEEEECCCC
TVGGAMSWGEPKTLAPFRENSPFFGLPIPDDVQVTSQIMAQPDPTLAERVIAELTDGTPL
EECCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCE
VTRKTREQGQIVLFHVTATADWSTLPLSGLFVQMLERLAVASSGTRPDATQLDGTTWTPE
EEECCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
QVMDGFGTLSDAGNLPGVPGPDLVTAPPSPEMQPGIYASGDRRLARNVVTDETALEPAVW
HHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEECCCHHHHHHHHCCCHHCCCCCC
PARIPVRGFSVPPEQPIAGLLLSLALLTLIADVIASLALTGRLKGAAGRTAAIVIALGIP
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCC
LAIPSQSAAQSSELDEFALQSTEEMVLAYVITSDQSVDDLSRAGLFGLSQTLTFRTSVEP
EECCCCHHHHHHHHHHHHHHCHHHEEEEEEEECCCCHHHHHHHHHHCCHHEEEEEECCCC
ASPVGVDLERDELAFFPILYWPITVEQPRPSSEAYAKLNAYLRSGGLILFDTKDADIARF
CCCCCCCCCCCCEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHCC
GTSSPNGRKLRDLAAPLDIPPLEPLPADHVLTRTFYLLQDYPGRHTSRDVWVEAAPPDAE
CCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHH
QIEGMPFRNLNDGVTPVVIGGNDWAAAWAMAENGAPLVPIGRGFTGERQRELAYRFGVNL
HHCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHH
VMHVLTGNYKSDQVHVPALLDRLGQ
HHHHHHCCCCCCCEEHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA