Click here to switch to the map view.

The map label for this gene is 110677680

Identifier: 110677680

GI number: 110677680

Start: 268503

End: 268964

Strand: Direct

Name: 110677680

Synonym: RD1_0276

Alternate gene names: NA

Gene position: 268503-268964 (Clockwise)

Preceding gene: 110677679

Following gene: 110677690

Centisome position: 6.5

GC content: 58.01

Gene sequence:

>462_bases
GTGCGCAAGAGAGGCACGCGCCGCCCGATCGGCCTGCCAGAAACGATCCATCAGTGGTGGAGGCCGGGCTTCGTTTCAGA
CGCCTTCACACCCTCTCATCCTTTGCGACGCAAACGACTGCCTGGTAATGGATGGCCGGAAGTTCCGTGTTCTGGCCATC
ATAGACGATTGCAGCCGGGAGTGTTTGGTGCTTGTGCCCGACAGGTCACTGTCTGGCGCGCGGCAGACACGCGAGCTGGA
TCAGATCATTCAGCTGCGCGCAACTGGTACCAGTATGCTAAGGTGGATTGGCACTGCATCGCCGTTGGAAAACCGCCACA
GAACGGGTTCGTCGAGAGCTTCTACGGCAGGATGCGGGATGATTTTCTGAACCAGCATTTGTTCTCGTCCCTCGCTGACG
CACGGTCAGAGATCGCAAAGTGCAAAGACGACCACAACCAAAACCAGCCAACCCCACGCTAA

Upstream 100 bases:

>100_bases
TGTGTATCATGGAGGATTGAACCCGCGAAGCTCAGGCGACAGTGGTGAACCGACACATATCCGGGCAACGGGTGACTCGG
AAACTGGATGACCGGGTCAG

Downstream 100 bases:

>100_bases
ACGCGTTCGCAGCCAAAACGAAGTTGCAAAAGCAGGCCGCATGAGGCCGGAAATCAAGACGCAGATGCGCCTAACGACTG
GAAGAGAGTTAGGTCTCAGG

Product: integrase catalytic subunit

Products: NA

Alternate protein names: Integrase Catalytic Subunit; Transposase; Integrase Core Domain Protein; Transposase IS; Transposase Related Protein; Insertion Sequence Transposase Protein; Transposase IS3 Family Protein; IS3 Family Transposase

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MRKRGTRRPIGLPETIHQWWRPGFVSDAFTPSHPLRRKRLPGNGWPEVPCSGHHRRLQPGVFGACARQVTVWRAADTRAG
SDHSAARNWYQYAKVDWHCIAVGKPPQNGFVESFYGRMRDDFLNQHLFSSLADARSEIAKCKDDHNQNQPTPR

Sequences:

>Translated_153_residues
MRKRGTRRPIGLPETIHQWWRPGFVSDAFTPSHPLRRKRLPGNGWPEVPCSGHHRRLQPGVFGACARQVTVWRAADTRAG
SDHSAARNWYQYAKVDWHCIAVGKPPQNGFVESFYGRMRDDFLNQHLFSSLADARSEIAKCKDDHNQNQPTPR
>Mature_153_residues
MRKRGTRRPIGLPETIHQWWRPGFVSDAFTPSHPLRRKRLPGNGWPEVPCSGHHRRLQPGVFGACARQVTVWRAADTRAG
SDHSAARNWYQYAKVDWHCIAVGKPPQNGFVESFYGRMRDDFLNQHLFSSLADARSEIAKCKDDHNQNQPTPR

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17569; Mature: 17569

Theoretical pI: Translated: 10.83; Mature: 10.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKRGTRRPIGLPETIHQWWRPGFVSDAFTPSHPLRRKRLPGNGWPEVPCSGHHRRLQPG
CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCC
VFGACARQVTVWRAADTRAGSDHSAARNWYQYAKVDWHCIAVGKPPQNGFVESFYGRMRD
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHH
DFLNQHLFSSLADARSEIAKCKDDHNQNQPTPR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MRKRGTRRPIGLPETIHQWWRPGFVSDAFTPSHPLRRKRLPGNGWPEVPCSGHHRRLQPG
CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCC
VFGACARQVTVWRAADTRAGSDHSAARNWYQYAKVDWHCIAVGKPPQNGFVESFYGRMRD
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHH
DFLNQHLFSSLADARSEIAKCKDDHNQNQPTPR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA