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The map label for this gene is ybgK [H]

Identifier: 110677650

GI number: 110677650

Start: 243273

End: 244295

Strand: Direct

Name: ybgK [H]

Synonym: RD1_0244

Alternate gene names: 110677650

Gene position: 243273-244295 (Clockwise)

Preceding gene: 110677649

Following gene: 110677651

Centisome position: 5.89

GC content: 64.03

Gene sequence:

>1023_bases
GTGAGCGGACATCTCACCATTCATGCCGCCGGTCCAGGATCATCGGTACAGGACATGGGGCGGGCGGGTTTTCTGGCCTA
TGGTCTGACGCGCGGCGGGGCGGCAGACCAGATGGCTCTGCACGAAGCGGCGGCCTTGCTGGGACAAAGCGCGACGCTCG
GCGCGATTGAAATGGTCGGCGTCGGGGGCACGTTCGAAAGCGACGTGGACACGGTCATTGCCCTGACTGGTGCCGAAATG
TCGGCCAGTATTGATGGCTCTGCCTTGGTTTGGCACGCCAGCCACGCCCTGCCCAAAGGCGCCAAGCTGAAGATCGGCGG
GGCGCTGAAGGGGACCTACGGGTATCTCAGCGTCGCGGGCGGCATCGAGGCGCCGCAGATCATGGGTGCGCGTTCGACCC
ATTTCAAAGCCGGGATCGGCGGTGCCCTGGAAGCGGGGCAGTCCTTGCCCATCGGGGTGACACCGACCCAGCGAGCCGGG
TTTGTCATCCATGCCAGTGGTCGCTTTGCCGGGGGGGATATCCGCATCGTGCCGTCCGTTCAGACGGACCAGTTTTCGCC
GGAGACGCTGGCGCGCTTCACGCAGACAACCTTTCGCCGCGATGCGCGTGGCAATCGGCAAGGCGTGCGCATGGATGCGG
ACACCGACGGCTTTTTTGTGGATGGCGGCCTGAGCATCGTGTCCGAAGTGATCACCGAAGGCGATATTCAGATCACTGGC
GACGGCGCCCCTTACGTGTTGATGTGCGAGTGTCAGACAACGGGCGGTTATCCGAGGATCGGCACCGTGCTGCCCTGCGA
TCTGGCACGCGTTGCGCAGGCCCCCGTGGGCGCACCGCTACGCTTTCGTTTCGTGACGATGGATGAGGCACGCGAGATCG
AACTCAAGGCACGTGCAGAGATCAAGGCCCTTGCCGGGCGCGCCCAGCCACTGGTGCGCAACCCGCATGAGATGTCCGAC
CTGCTGAGCTATCAACTGATCGGTGGCGCCATTTCCGCGACCACGGACCCTTTTGCCGACTAA

Upstream 100 bases:

>100_bases
GCGATGAGCTTCTGTTTCCGCAGGTCTCGCGGCAAGCTCTGATGGACATCATGAAATCCGACACATCCGGCAATGGTGGT
GCCGAGCGGGAGACACTGCC

Downstream 100 bases:

>100_bases
CAGGAGAGCCAAATGAACCGCGTAGATCTGAATGCCGATATGGGCGAAAGTTTTGGCCCATGGAAAATGGGCGATGATGC
AACCCTGCTCAAAACCGTGA

Product: allophanate hydrolase subunit 2, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 339

Protein sequence:

>340_residues
MSGHLTIHAAGPGSSVQDMGRAGFLAYGLTRGGAADQMALHEAAALLGQSATLGAIEMVGVGGTFESDVDTVIALTGAEM
SASIDGSALVWHASHALPKGAKLKIGGALKGTYGYLSVAGGIEAPQIMGARSTHFKAGIGGALEAGQSLPIGVTPTQRAG
FVIHASGRFAGGDIRIVPSVQTDQFSPETLARFTQTTFRRDARGNRQGVRMDADTDGFFVDGGLSIVSEVITEGDIQITG
DGAPYVLMCECQTTGGYPRIGTVLPCDLARVAQAPVGAPLRFRFVTMDEAREIELKARAEIKALAGRAQPLVRNPHEMSD
LLSYQLIGGAISATTDPFAD

Sequences:

>Translated_340_residues
MSGHLTIHAAGPGSSVQDMGRAGFLAYGLTRGGAADQMALHEAAALLGQSATLGAIEMVGVGGTFESDVDTVIALTGAEM
SASIDGSALVWHASHALPKGAKLKIGGALKGTYGYLSVAGGIEAPQIMGARSTHFKAGIGGALEAGQSLPIGVTPTQRAG
FVIHASGRFAGGDIRIVPSVQTDQFSPETLARFTQTTFRRDARGNRQGVRMDADTDGFFVDGGLSIVSEVITEGDIQITG
DGAPYVLMCECQTTGGYPRIGTVLPCDLARVAQAPVGAPLRFRFVTMDEAREIELKARAEIKALAGRAQPLVRNPHEMSD
LLSYQLIGGAISATTDPFAD
>Mature_339_residues
SGHLTIHAAGPGSSVQDMGRAGFLAYGLTRGGAADQMALHEAAALLGQSATLGAIEMVGVGGTFESDVDTVIALTGAEMS
ASIDGSALVWHASHALPKGAKLKIGGALKGTYGYLSVAGGIEAPQIMGARSTHFKAGIGGALEAGQSLPIGVTPTQRAGF
VIHASGRFAGGDIRIVPSVQTDQFSPETLARFTQTTFRRDARGNRQGVRMDADTDGFFVDGGLSIVSEVITEGDIQITGD
GAPYVLMCECQTTGGYPRIGTVLPCDLARVAQAPVGAPLRFRFVTMDEAREIELKARAEIKALAGRAQPLVRNPHEMSDL
LSYQLIGGAISATTDPFAD

Specific function: Unknown

COG id: COG1984

COG function: function code E; Allophanate hydrolase subunit 2

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycsJ and yeast urea amidolyase (DUR1,2) [H]

Homologues:

Organism=Escherichia coli, GI1786930, Length=301, Percent_Identity=33.8870431893688, Blast_Score=145, Evalue=4e-36,
Organism=Saccharomyces cerevisiae, GI6319685, Length=334, Percent_Identity=25.4491017964072, Blast_Score=92, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003778 [H]

Pfam domain/function: PF02626 AHS2 [H]

EC number: NA

Molecular weight: Translated: 35199; Mature: 35068

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGHLTIHAAGPGSSVQDMGRAGFLAYGLTRGGAADQMALHEAAALLGQSATLGAIEMVG
CCCCEEEEECCCCCCHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEE
VGGTFESDVDTVIALTGAEMSASIDGSALVWHASHALPKGAKLKIGGALKGTYGYLSVAG
CCCCCCCCCCEEEEEECCCEECCCCCCEEEEEECCCCCCCCEEEECCEEECCCEEEEECC
GIEAPQIMGARSTHFKAGIGGALEAGQSLPIGVTPTQRAGFVIHASGRFAGGDIRIVPSV
CCCCCHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECC
QTDQFSPETLARFTQTTFRRDARGNRQGVRMDADTDGFFVDGGLSIVSEVITEGDIQITG
CCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEECHHHHHHHHHCCCCEEEEC
DGAPYVLMCECQTTGGYPRIGTVLPCDLARVAQAPVGAPLRFRFVTMDEAREIELKARAE
CCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHCCCCCCCEEEEEEEECCCCEEEEHHHHH
IKALAGRAQPLVRNPHEMSDLLSYQLIGGAISATTDPFAD
HHHHHCCCCCCCCCCHHHHHHHHHHHHCCEEECCCCCCCC
>Mature Secondary Structure 
SGHLTIHAAGPGSSVQDMGRAGFLAYGLTRGGAADQMALHEAAALLGQSATLGAIEMVG
CCCEEEEECCCCCCHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEE
VGGTFESDVDTVIALTGAEMSASIDGSALVWHASHALPKGAKLKIGGALKGTYGYLSVAG
CCCCCCCCCCEEEEEECCCEECCCCCCEEEEEECCCCCCCCEEEECCEEECCCEEEEECC
GIEAPQIMGARSTHFKAGIGGALEAGQSLPIGVTPTQRAGFVIHASGRFAGGDIRIVPSV
CCCCCHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECC
QTDQFSPETLARFTQTTFRRDARGNRQGVRMDADTDGFFVDGGLSIVSEVITEGDIQITG
CCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEECHHHHHHHHHCCCCEEEEC
DGAPYVLMCECQTTGGYPRIGTVLPCDLARVAQAPVGAPLRFRFVTMDEAREIELKARAE
CCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHCCCCCCCEEEEEEEECCCCEEEEHHHHH
IKALAGRAQPLVRNPHEMSDLLSYQLIGGAISATTDPFAD
HHHHHCCCCCCCCCCHHHHHHHHHHHHCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]