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The map label for this gene is yiaN [C]

Identifier: 110677647

GI number: 110677647

Start: 240274

End: 241608

Strand: Direct

Name: yiaN [C]

Synonym: RD1_0241

Alternate gene names: 110677647

Gene position: 240274-241608 (Clockwise)

Preceding gene: 110677646

Following gene: 110677648

Centisome position: 5.81

GC content: 58.28

Gene sequence:

>1335_bases
ATGATCATTTCGAGGTGTGAAGCAATGACCGAACTATATGCAATTGCCATTTTCCTCGCGGTCCTCTTTTTGCTTCTTGG
CACGGGCGTCTGGGTGGGTCTGGCGCTGATGGGTGTCGCTTGGGTCGGCATGGAGCTTTTCACCACGCGGCCCGTGGGCG
ATACGATGATCACGACGATCTGGGCGTCTTCCAGCAGTTGGACGCTGACGGCCCTGCCCCTGTTTATCTGGATGGGCGAA
ATCCTCTATCGCACCCGCCTGAGCGAAGACATGTTCAAAGGGCTGTCCCCGTGGCTGGCGCGGCTGCCGGGGGGGCTGGT
TCATACCAATATCGTGTCCTGCACGGTGTTTGCTGCCGTGTCAGGTTCGTCTGCGGCCACGCTGACCACCGTGGGCAAAA
TGGCGATCCCGGAACTGCGCGCGCGCAAATACCCCGAGAAAATGGTCATTGGCACGCTGGCCGGAGCGGCCACCCTTGGC
CTTATGATCCCACCTTCGCTGGCGCTGATTGTCTATGGTGTGACCGTGAATGAAAGCATCACAAAGCTGTTTTTCGCGGG
TGTGTTTCCAGGCCTGATCCTCGCCAGCATGTTCATGGCCTATGTGGCAATTGTCTCGTTCACGTCAAAGGACTGGAATC
CGACCGTTGAACGGGGCATGAGCTTTGGCGAAAAGGTGCGCAATTCGAAATTCCTCGCGCCTGTCTTTGCACTGATCGCC
GTGGTCATCGGGTCGATGTATCTGGGCTACGCGACCGCGACCGAAGCCGCCGCCATCGGGGTCATCGGCTCCCTGCTGCT
GGCACTGACCCAGGGCTCGCTGACCATGGCGTCGTTTCAGGCCAGCCTGATGGGCGCAATGCGCACCTCTGCCATGATCG
CCCTGATCCTAGCAGGCGCGGCGTTTCTGAAACTGTCGATGGGCTTTACCGGGTTGCCGCGCGCGCTGGCGGACGGGATC
GCCGCGATGGAGTTGGGTCGCTTTCAACTGCTCATGGCGCTTCTGGTGTTTTACATCATTTTGGGCATGTTTCTGGACGG
GATTTCTGCCGTTGTGCTGACCATGGCCATCGTGGAACCCATGGTGCGAGAGGCAGGCATCGACCTCATCTGGTTTGGCA
TCTTTGTGGTGGTTGTCGTCGAAATGGCGCAGATCACACCGCCCATCGGGTTCAACCTCTTTGTGCTCCAAGGCATGACG
CGACACGAAATGGGGTATATCACCAAGGCGGCCTTGCCGATGTTCCTGATCATGGTTCTGATGGTCTTTGTGCTGATCTG
GTTCCCGCAGATTGCCACCTGGCTGCCTGAAAACCTCAGACAAAACGCCAGTTAG

Upstream 100 bases:

>100_bases
GTCATGGTGATCGGCGGCGGGCTTTTGGCGATCTCCCTGACCGACAACCTGTTCCACGTCATTTTCAAAGGGGATCACCG
GATCGTGCGCGATACCGTCG

Downstream 100 bases:

>100_bases
TGCTGAAGGTTCTGTTATGGCGGATTTCGGAAAACGGCAGGCTGGCCTTGATCGTCGGACTGGTCGCGGGGCTGACCTTG
CCGGGCCTTGCCGCTGCATT

Product: TRAP dicarboxylate family transporter, DctM subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 444; Mature: 444

Protein sequence:

>444_residues
MIISRCEAMTELYAIAIFLAVLFLLLGTGVWVGLALMGVAWVGMELFTTRPVGDTMITTIWASSSSWTLTALPLFIWMGE
ILYRTRLSEDMFKGLSPWLARLPGGLVHTNIVSCTVFAAVSGSSAATLTTVGKMAIPELRARKYPEKMVIGTLAGAATLG
LMIPPSLALIVYGVTVNESITKLFFAGVFPGLILASMFMAYVAIVSFTSKDWNPTVERGMSFGEKVRNSKFLAPVFALIA
VVIGSMYLGYATATEAAAIGVIGSLLLALTQGSLTMASFQASLMGAMRTSAMIALILAGAAFLKLSMGFTGLPRALADGI
AAMELGRFQLLMALLVFYIILGMFLDGISAVVLTMAIVEPMVREAGIDLIWFGIFVVVVVEMAQITPPIGFNLFVLQGMT
RHEMGYITKAALPMFLIMVLMVFVLIWFPQIATWLPENLRQNAS

Sequences:

>Translated_444_residues
MIISRCEAMTELYAIAIFLAVLFLLLGTGVWVGLALMGVAWVGMELFTTRPVGDTMITTIWASSSSWTLTALPLFIWMGE
ILYRTRLSEDMFKGLSPWLARLPGGLVHTNIVSCTVFAAVSGSSAATLTTVGKMAIPELRARKYPEKMVIGTLAGAATLG
LMIPPSLALIVYGVTVNESITKLFFAGVFPGLILASMFMAYVAIVSFTSKDWNPTVERGMSFGEKVRNSKFLAPVFALIA
VVIGSMYLGYATATEAAAIGVIGSLLLALTQGSLTMASFQASLMGAMRTSAMIALILAGAAFLKLSMGFTGLPRALADGI
AAMELGRFQLLMALLVFYIILGMFLDGISAVVLTMAIVEPMVREAGIDLIWFGIFVVVVVEMAQITPPIGFNLFVLQGMT
RHEMGYITKAALPMFLIMVLMVFVLIWFPQIATWLPENLRQNAS
>Mature_444_residues
MIISRCEAMTELYAIAIFLAVLFLLLGTGVWVGLALMGVAWVGMELFTTRPVGDTMITTIWASSSSWTLTALPLFIWMGE
ILYRTRLSEDMFKGLSPWLARLPGGLVHTNIVSCTVFAAVSGSSAATLTTVGKMAIPELRARKYPEKMVIGTLAGAATLG
LMIPPSLALIVYGVTVNESITKLFFAGVFPGLILASMFMAYVAIVSFTSKDWNPTVERGMSFGEKVRNSKFLAPVFALIA
VVIGSMYLGYATATEAAAIGVIGSLLLALTQGSLTMASFQASLMGAMRTSAMIALILAGAAFLKLSMGFTGLPRALADGI
AAMELGRFQLLMALLVFYIILGMFLDGISAVVLTMAIVEPMVREAGIDLIWFGIFVVVVVEMAQITPPIGFNLFVLQGMT
RHEMGYITKAALPMFLIMVLMVFVLIWFPQIATWLPENLRQNAS

Specific function: Unknown

COG id: COG1593

COG function: function code G; TRAP-type C4-dicarboxylate transport system, large permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TRAP transporter large permease family [H]

Homologues:

Organism=Escherichia coli, GI48994950, Length=391, Percent_Identity=25.5754475703325, Blast_Score=117, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010656
- InterPro:   IPR004681 [H]

Pfam domain/function: PF06808 DctM [H]

EC number: NA

Molecular weight: Translated: 47845; Mature: 47845

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
6.8 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
6.8 %Met     (Mature Protein)
7.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIISRCEAMTELYAIAIFLAVLFLLLGTGVWVGLALMGVAWVGMELFTTRPVGDTMITTI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHE
WASSSSWTLTALPLFIWMGEILYRTRLSEDMFKGLSPWLARLPGGLVHTNIVSCTVFAAV
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHC
SGSSAATLTTVGKMAIPELRARKYPEKMVIGTLAGAATLGLMIPPSLALIVYGVTVNESI
CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHEEECCCCHHH
TKLFFAGVFPGLILASMFMAYVAIVSFTSKDWNPTVERGMSFGEKVRNSKFLAPVFALIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
VVIGSMYLGYATATEAAAIGVIGSLLLALTQGSLTMASFQASLMGAMRTSAMIALILAGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFLKLSMGFTGLPRALADGIAAMELGRFQLLMALLVFYIILGMFLDGISAVVLTMAIVEP
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MVREAGIDLIWFGIFVVVVVEMAQITPPIGFNLFVLQGMTRHEMGYITKAALPMFLIMVL
HHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHEECCCHHHHHHHHHHHHHHHHHHHHH
MVFVLIWFPQIATWLPENLRQNAS
HHHHHHHHHHHHHHCCHHHHCCCC
>Mature Secondary Structure
MIISRCEAMTELYAIAIFLAVLFLLLGTGVWVGLALMGVAWVGMELFTTRPVGDTMITTI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHE
WASSSSWTLTALPLFIWMGEILYRTRLSEDMFKGLSPWLARLPGGLVHTNIVSCTVFAAV
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHC
SGSSAATLTTVGKMAIPELRARKYPEKMVIGTLAGAATLGLMIPPSLALIVYGVTVNESI
CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHEEECCCCHHH
TKLFFAGVFPGLILASMFMAYVAIVSFTSKDWNPTVERGMSFGEKVRNSKFLAPVFALIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
VVIGSMYLGYATATEAAAIGVIGSLLLALTQGSLTMASFQASLMGAMRTSAMIALILAGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFLKLSMGFTGLPRALADGIAAMELGRFQLLMALLVFYIILGMFLDGISAVVLTMAIVEP
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MVREAGIDLIWFGIFVVVVVEMAQITPPIGFNLFVLQGMTRHEMGYITKAALPMFLIMVL
HHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHEECCCHHHHHHHHHHHHHHHHHHHHH
MVFVLIWFPQIATWLPENLRQNAS
HHHHHHHHHHHHHHCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]