Click here to switch to the map view.

The map label for this gene is tcrX [H]

Identifier: 110677502

GI number: 110677502

Start: 89289

End: 90098

Strand: Direct

Name: tcrX [H]

Synonym: RD1_0087

Alternate gene names: 110677502

Gene position: 89289-90098 (Clockwise)

Preceding gene: 110677498

Following gene: 110677504

Centisome position: 2.16

GC content: 56.79

Gene sequence:

>810_bases
ATGTCAAATCCTTCCGATACCACAGATATCAGCAGCCAGTTGGCCAATTACCTGCCTTATTTGCGCCGTTTCGCCCGTGC
GATGACCGGAAGCCAGTCCAGCGGGGACCGCTTTGCCGCCGCAGCGTTGGAAACCATCCTTACCGATCGTTCGGTCCTTG
ATGGCAGTGACGTCAAAACCGGGCTGTTCCGGGTGCTATATCGGATCTGGTCGAGCGCCGGTGCGCCTGTTGATGACGCG
GAAAGCGGGTTGAAGGCGCGCGCGCAAAAACACATGGCCAAGCTGACCGACAACAGCCGGGAGGCACTGCTGCTGCATAC
GCTTGAAGGTTTCAGCTTTGACAAGATCGCGAATATCATCGGAATCGAACAAACCGAGGCCGAGTCGCTTGTGTCGATCG
CGCGTCGCGAAATAGCAGATGCGGCCTCTGGCTCGGTGATGATCATCGAGGATGAAGCGATCATTGCCATGGATCTGGAA
AGTATCGTGTCCGAAATGGGCCATCGCGTGACCGGCATTGCCACGACCCGCGCGGAAGCTGTGGCATTGGGCAAGGCCGA
TGCACCGGACCTTATTCTGGCTGACATACAGCTTGCGGACAACTCATCGGGTATCGATGCGGTAAACGACCTGATTGAAG
CCCTTGGCGAGCGCCCGGTCATCTTTATCACCGCCTTCCCGGAACGGTTGCTGACCGGTGAGAAGCATGAACCCGCCTTC
CTGATTTCAAAACCCTACGCAGAGGATCAGGTCATCTCCTCCGTCAGTCAGGCAATGTTCTTCTCATCGACGGAAACACT
CACCACCTGA

Upstream 100 bases:

>100_bases
CAAAATTCCCTAAAGCGGTTGCAACTGTTGCTGCCGACAGTATCTAAACACCACACCTCTCTATATGGTTCCCGTTGCGC
CGAAAAAAAGGACAAGGTTT

Downstream 100 bases:

>100_bases
GCCTGCGCGCTCAGCTGGTGGGCGCAAGCTCCGCGTCATCAGTCGGGACCTCTTGATCTTCGCGCGGGTCATCGGCGACC
GGTTTGGCATCGCTCGGCTC

Product: two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 268

Protein sequence:

>269_residues
MSNPSDTTDISSQLANYLPYLRRFARAMTGSQSSGDRFAAAALETILTDRSVLDGSDVKTGLFRVLYRIWSSAGAPVDDA
ESGLKARAQKHMAKLTDNSREALLLHTLEGFSFDKIANIIGIEQTEAESLVSIARREIADAASGSVMIIEDEAIIAMDLE
SIVSEMGHRVTGIATTRAEAVALGKADAPDLILADIQLADNSSGIDAVNDLIEALGERPVIFITAFPERLLTGEKHEPAF
LISKPYAEDQVISSVSQAMFFSSTETLTT

Sequences:

>Translated_269_residues
MSNPSDTTDISSQLANYLPYLRRFARAMTGSQSSGDRFAAAALETILTDRSVLDGSDVKTGLFRVLYRIWSSAGAPVDDA
ESGLKARAQKHMAKLTDNSREALLLHTLEGFSFDKIANIIGIEQTEAESLVSIARREIADAASGSVMIIEDEAIIAMDLE
SIVSEMGHRVTGIATTRAEAVALGKADAPDLILADIQLADNSSGIDAVNDLIEALGERPVIFITAFPERLLTGEKHEPAF
LISKPYAEDQVISSVSQAMFFSSTETLTT
>Mature_268_residues
SNPSDTTDISSQLANYLPYLRRFARAMTGSQSSGDRFAAAALETILTDRSVLDGSDVKTGLFRVLYRIWSSAGAPVDDAE
SGLKARAQKHMAKLTDNSREALLLHTLEGFSFDKIANIIGIEQTEAESLVSIARREIADAASGSVMIIEDEAIIAMDLES
IVSEMGHRVTGIATTRAEAVALGKADAPDLILADIQLADNSSGIDAVNDLIEALGERPVIFITAFPERLLTGEKHEPAFL
ISKPYAEDQVISSVSQAMFFSSTETLTT

Specific function: Key regulator for adaptation to epiphytic life (leaf colonizing) of the bacterium. Positively regulates several genes including katE, sodA, hsp20, dps and gloA. However it is not known whether this regulation is direct or indirect. Also induces several de

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR014605
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 28913; Mature: 28782

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNPSDTTDISSQLANYLPYLRRFARAMTGSQSSGDRFAAAALETILTDRSVLDGSDVKT
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHCCCCCHHH
GLFRVLYRIWSSAGAPVDDAESGLKARAQKHMAKLTDNSREALLLHTLEGFSFDKIANII
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHH
GIEQTEAESLVSIARREIADAASGSVMIIEDEAIIAMDLESIVSEMGHRVTGIATTRAEA
CCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEHHHHHHHHHHCCCEEEEEHHHHHH
VALGKADAPDLILADIQLADNSSGIDAVNDLIEALGERPVIFITAFPERLLTGEKHEPAF
HEECCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHCCCCCCCEE
LISKPYAEDQVISSVSQAMFFSSTETLTT
EEECCCCHHHHHHHHHHHHHHCCCHHCCC
>Mature Secondary Structure 
SNPSDTTDISSQLANYLPYLRRFARAMTGSQSSGDRFAAAALETILTDRSVLDGSDVKT
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHCCCCCHHH
GLFRVLYRIWSSAGAPVDDAESGLKARAQKHMAKLTDNSREALLLHTLEGFSFDKIANII
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHH
GIEQTEAESLVSIARREIADAASGSVMIIEDEAIIAMDLESIVSEMGHRVTGIATTRAEA
CCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEHHHHHHHHHHCCCEEEEEHHHHHH
VALGKADAPDLILADIQLADNSSGIDAVNDLIEALGERPVIFITAFPERLLTGEKHEPAF
HEECCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHCCCCCCCEE
LISKPYAEDQVISSVSQAMFFSSTETLTT
EEECCCCHHHHHHHHHHHHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA