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The map label for this gene is ydcJ [H]

Identifier: 110635954

GI number: 110635954

Start: 3916785

End: 3918233

Strand: Reverse

Name: ydcJ [H]

Synonym: Meso_3628

Alternate gene names: 110635954

Gene position: 3918233-3916785 (Counterclockwise)

Preceding gene: 110635955

Following gene: 110635953

Centisome position: 88.8

GC content: 62.04

Gene sequence:

>1449_bases
ATGACAACTTCAGGCGAGTCTGACTTTGATGGAACCAGAAAAGCATTGGACATGGTGAGCAAGGACAGCTTCCTCCCCGC
AGACGAAATCCGCAGCGCATTCTCTGCGGCCATGTCCGCGATGTACCGCACGGAAGTGCCTGCCTATGGTACTCTCCTGT
CGCTCGTCGCCGAAGTAAACCAACGCACCCTCGCCGAGAATCCAGAGCTGCGCGAGCGACTCGAGGTGACGGATTCGCTC
GACCGCATCTCAGAGGAGCGGCACGGCGCCATCCGGCTCGGGCGCGCAGACGAGCTTTCCATGATGCGACGGGCATTCGC
GGTCATGGGAATGTTTCCAGTTGGGTATTACGATCTCAGCGAAGCGGGCGTCCCTGTTCATTCCACGGCGTTCCGGCCCT
TCGACGGAGCTGCGCTAAGCATCAATCCGTTCCGGGTCTTTACGTCGCTGCTGCGGCTCGACCTGATCGAAGACGCAGAG
CTGCGTGAGGATGCGCGGGCGATCCTCGAGCGGCGCCAGATTTTCACGCCGCGCGCAATGGAGCTGATCGAGAAGGCCGA
GGCTGGAGGCGGGCTTGAGGCTGACGACGCCACGCTCTTCGTGACTGAACTGCTGGAGACCTTCCAGTGGCACTCCCAAG
CCAGCGTGGATCATCAACTCTATAGGCGACTTCATTCCGCCCATCGGCTGATTGCAGATGTGGTTTCCTTCCGCGGCCCG
CATATCAACCACCTGACGCCCCGCACCCTCGACATCGATGAAGTTCAGCGGCTTATGCCGGAGCGTGGCATCGTACCGAA
GGCCGTCATCGAAGGGCCGCCGTCGCGTGCCTGCCCCATCCTGCTGCGCCAGACGTCTTTCAAGGCGCTGGAGGAGCCTG
TCGCCTTCCTCCAGCAGGGTAGCGGACGGGTAGCAGGCTCTCACACGGCCCGGTTCGGCGAGATCGAGCAGCGCGGCGTC
GCGCTCACGCCGAAAGGGCGCAAGCTCTACGACCGGCTCCTAGGCGAGGCACGGAAAAATGCCCGCCCGGCCGCCGACGG
CTCCAACGCAGCGGACTACCGGAGCGCGCTGGAGATCGCCTTCCTGAACTTCCCCGATACTTGGGACGAGATCAGGCGGC
AGGGCCTGGGATATTTCACCTATCGTGTGGAAGAGCCCGTCCTGGGAACGGCCTTGCATGCTACCGGAAAATCGTTCGAC
GAACTCGTAGAAGCCGGAGCCGTCGCGTGCGATCCGATCGTATATGAAGATTTCCTCCCGGTCAGCGCGGCAGGCATCTT
CCAGTCGAATCTTGGCGACGACGATGCTCAGGAGTTCTCGCCCAGCCCGAACCAGAGGACGTTCGAGGAAGCGCTCGGCG
TCAATGTGCTCAACGAGTTCGAGCACTATGCGGAGCTTGAGAGGCGTTCGATCGAACGCTGTCTGTTGCGGTTGTCGGCG
GCGGCATGA

Upstream 100 bases:

>100_bases
TCGCGTGTTTTCAACGCGCTGCTAATCAGCCGGTAGAGGGCGGCCGTTGCGAGGAAAAAGGCGCGCTACGCAATCTTCGG
GATCCCCTTATTAGAGCGGA

Downstream 100 bases:

>100_bases
GCCGGATCGCGCCTTTGCACCTTGAGGCGTTGGGCCGCTTGCTCGGCCCGAGCCAGCGTGTTCAAGAAGCATACCTCACG
GCAGCTATCGGAACAATCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 482; Mature: 481

Protein sequence:

>482_residues
MTTSGESDFDGTRKALDMVSKDSFLPADEIRSAFSAAMSAMYRTEVPAYGTLLSLVAEVNQRTLAENPELRERLEVTDSL
DRISEERHGAIRLGRADELSMMRRAFAVMGMFPVGYYDLSEAGVPVHSTAFRPFDGAALSINPFRVFTSLLRLDLIEDAE
LREDARAILERRQIFTPRAMELIEKAEAGGGLEADDATLFVTELLETFQWHSQASVDHQLYRRLHSAHRLIADVVSFRGP
HINHLTPRTLDIDEVQRLMPERGIVPKAVIEGPPSRACPILLRQTSFKALEEPVAFLQQGSGRVAGSHTARFGEIEQRGV
ALTPKGRKLYDRLLGEARKNARPAADGSNAADYRSALEIAFLNFPDTWDEIRRQGLGYFTYRVEEPVLGTALHATGKSFD
ELVEAGAVACDPIVYEDFLPVSAAGIFQSNLGDDDAQEFSPSPNQRTFEEALGVNVLNEFEHYAELERRSIERCLLRLSA
AA

Sequences:

>Translated_482_residues
MTTSGESDFDGTRKALDMVSKDSFLPADEIRSAFSAAMSAMYRTEVPAYGTLLSLVAEVNQRTLAENPELRERLEVTDSL
DRISEERHGAIRLGRADELSMMRRAFAVMGMFPVGYYDLSEAGVPVHSTAFRPFDGAALSINPFRVFTSLLRLDLIEDAE
LREDARAILERRQIFTPRAMELIEKAEAGGGLEADDATLFVTELLETFQWHSQASVDHQLYRRLHSAHRLIADVVSFRGP
HINHLTPRTLDIDEVQRLMPERGIVPKAVIEGPPSRACPILLRQTSFKALEEPVAFLQQGSGRVAGSHTARFGEIEQRGV
ALTPKGRKLYDRLLGEARKNARPAADGSNAADYRSALEIAFLNFPDTWDEIRRQGLGYFTYRVEEPVLGTALHATGKSFD
ELVEAGAVACDPIVYEDFLPVSAAGIFQSNLGDDDAQEFSPSPNQRTFEEALGVNVLNEFEHYAELERRSIERCLLRLSA
AA
>Mature_481_residues
TTSGESDFDGTRKALDMVSKDSFLPADEIRSAFSAAMSAMYRTEVPAYGTLLSLVAEVNQRTLAENPELRERLEVTDSLD
RISEERHGAIRLGRADELSMMRRAFAVMGMFPVGYYDLSEAGVPVHSTAFRPFDGAALSINPFRVFTSLLRLDLIEDAEL
REDARAILERRQIFTPRAMELIEKAEAGGGLEADDATLFVTELLETFQWHSQASVDHQLYRRLHSAHRLIADVVSFRGPH
INHLTPRTLDIDEVQRLMPERGIVPKAVIEGPPSRACPILLRQTSFKALEEPVAFLQQGSGRVAGSHTARFGEIEQRGVA
LTPKGRKLYDRLLGEARKNARPAADGSNAADYRSALEIAFLNFPDTWDEIRRQGLGYFTYRVEEPVLGTALHATGKSFDE
LVEAGAVACDPIVYEDFLPVSAAGIFQSNLGDDDAQEFSPSPNQRTFEEALGVNVLNEFEHYAELERRSIERCLLRLSAA
A

Specific function: Unknown

COG id: COG5383

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To M.tuberculosis Rv3292 [H]

Homologues:

Organism=Escherichia coli, GI1787692, Length=454, Percent_Identity=57.7092511013216, Blast_Score=496, Evalue=1e-141,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009770 [H]

Pfam domain/function: PF07063 DUF1338 [H]

EC number: NA

Molecular weight: Translated: 53604; Mature: 53473

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTSGESDFDGTRKALDMVSKDSFLPADEIRSAFSAAMSAMYRTEVPAYGTLLSLVAEVN
CCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
QRTLAENPELRERLEVTDSLDRISEERHGAIRLGRADELSMMRRAFAVMGMFPVGYYDLS
HHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHCCCCCEEHH
EAGVPVHSTAFRPFDGAALSINPFRVFTSLLRLDLIEDAELREDARAILERRQIFTPRAM
CCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHH
ELIEKAEAGGGLEADDATLFVTELLETFQWHSQASVDHQLYRRLHSAHRLIADVVSFRGP
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC
HINHLTPRTLDIDEVQRLMPERGIVPKAVIEGPPSRACPILLRQTSFKALEEPVAFLQQG
CCCCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
SGRVAGSHTARFGEIEQRGVALTPKGRKLYDRLLGEARKNARPAADGSNAADYRSALEIA
CCCCCCCCCHHHCCHHHCCEEECCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHEE
FLNFPDTWDEIRRQGLGYFTYRVEEPVLGTALHATGKSFDELVEAGAVACDPIVYEDFLP
EECCCCCHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHCCC
VSAAGIFQSNLGDDDAQEFSPSPNQRTFEEALGVNVLNEFEHYAELERRSIERCLLRLSA
HHHHHHHHCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
AA
CC
>Mature Secondary Structure 
TTSGESDFDGTRKALDMVSKDSFLPADEIRSAFSAAMSAMYRTEVPAYGTLLSLVAEVN
CCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
QRTLAENPELRERLEVTDSLDRISEERHGAIRLGRADELSMMRRAFAVMGMFPVGYYDLS
HHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHCCCCCEEHH
EAGVPVHSTAFRPFDGAALSINPFRVFTSLLRLDLIEDAELREDARAILERRQIFTPRAM
CCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHH
ELIEKAEAGGGLEADDATLFVTELLETFQWHSQASVDHQLYRRLHSAHRLIADVVSFRGP
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC
HINHLTPRTLDIDEVQRLMPERGIVPKAVIEGPPSRACPILLRQTSFKALEEPVAFLQQG
CCCCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
SGRVAGSHTARFGEIEQRGVALTPKGRKLYDRLLGEARKNARPAADGSNAADYRSALEIA
CCCCCCCCCHHHCCHHHCCEEECCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHEE
FLNFPDTWDEIRRQGLGYFTYRVEEPVLGTALHATGKSFDELVEAGAVACDPIVYEDFLP
EECCCCCHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHCCC
VSAAGIFQSNLGDDDAQEFSPSPNQRTFEEALGVNVLNEFEHYAELERRSIERCLLRLSA
HHHHHHHHCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
AA
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]