| Definition | Mesorhizobium sp. BNC1, complete genome. |
|---|---|
| Accession | NC_008254 |
| Length | 4,412,446 |
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The map label for this gene is gdh [H]
Identifier: 110635853
GI number: 110635853
Start: 3794502
End: 3797060
Strand: Reverse
Name: gdh [H]
Synonym: Meso_3525
Alternate gene names: 110635853
Gene position: 3797060-3794502 (Counterclockwise)
Preceding gene: 110635854
Following gene: 110635852
Centisome position: 86.05
GC content: 61.08
Gene sequence:
>2559_bases GTGTTTCGTATCATACTATCAGTAATCATTGCTGTTCTTGGCCTTGTCATTGCCGCCGGCGGCGTTTGGCTCGCTGTTCT TGGCGGCTCCTGGTTCTACATCCTGCTTGGGCTTCTTCTCGTTCTTTCCGGCGCTTTGCTTTTGAGGCGCAGCGCAAGCG GGCTTCTTCTGTACGGCCTGACCATTCTTCTCACTCTTGCCTGGAGTGTTTGGGAAGTGGGCTTCGACTGGTGGGCTTTG GTTCCCCGCGGTGCTCTCATCCTAGTCCTGGGCGTTCTTTTGCTACTGCCGCCCATATTGCGGGCCATGCGCGTTCCAGA AGGCCGACGGGCGAGCTACGGGATGAACAGCGGCGTGCTTGCGGCCTCGATCTTCATCGCAGCCATCGTTGGCATCTATT CGATGTTTCAACAGCCGCACGATATCGATGGCGCATTCCCCGAGCAGCGGATTGCCGTGTCCCCGGCGCCGCAGCAAGGC GATGTGCCGCCTGGCGAATGGGCAGCCTATGGCCGCACCTCCTTTGGCCAGCGCTATTCACCACTGGACCAGATCACGCC TGAAAACGTGTCGCAGTTGGAAGTGGCATGGAGCTATCAGACGGGAGAGATGCGCGATGAAAACGATCCCGGCGAGACGA CATATGAGGTGACGCCGCTGATGGTGAACAACACCCTCTATATCTGTACGCCCTTCAGCACGGTGATCGCGCTTGATCCT GTTACTGGCCAGGAAAAGTGGCGCTTCGACCCGCAACTGAGACAGCCGCCGACCGAGACAACGCAGCATATGACCTGCCG CGGCGTTTCGTATCACGAGGCAGCGCCGGGGGATCTTCCTGCGACCAGCCCCACGGCTCAGGCTGCACCGGAAACCGCGC CGACGGGCCAAGCCGGAGCACCGGATGAAACGGCGGAGATCGCGACGAGCGTGGATGAGATAACGACGCAGGCAGCACCT GTGCCGCAGAACATCGTTACCGGACAGGCAGAACCCGGCGCACTTAGCTTTGTTGTTACGCGCGAAGAGCCGCCTGCGCG CGTGACGCTCAGCCAGCAGTGCATGAAGCGGCTGTTCGTGCCCACGTCGGATGGGCGGCTGATCACGATAAGTGCCGATA CGGGGGAGATCTGCCCCGGCTTCGGCGGCGACGGCACGATCAATCTCTGGGCGAATATGCCGAACGTTACGCCCGGCTCC TACTATTCCACCTCGCCTCCCCTGATTGCCGGCCGGCTTGTCATCATCGGCGGGGCCGTAAACGATAACGAAGCGATCAC CTCGCCCTCCGGCGTAATCCGGGCCTTCGATCTCTACACCGGCGCACTTGTCTGGAATTTCGACAGCAAGAATCCCGAAG CGACGCAGCCGATCGCGCCAGACGGCGTATATTCCCAGAACGCACCAAATTCCTGGAGCGTGGCGAGCTACGACCCTAAT CTCGGCCTCGCCTATTTTCCGATGGGCAACGAATCGCCGGACCAGTTCGGCGGAAATCGGGGTGAAAATACCGAACGCTA CTCCTCCTCGGTTCTGGCGCTGCGGGCTGACACCGGCGAGGTGGCATGGGTGTTCCAGACAGTGCATCACGACATCTGGG ACTATGACGTGCCCGCTCAGCCTGTCCTGATCGACCTCACGGTCGATGGACAGGCAGTGCCAGCGCTGGTGCAGGCCACA AAACAAGGCGACATCTTCGTGCTCAACCGGGCAACCGGCGAGCCCATTTTCCCTATCGAGGAGCGGCCAACGCCGCAGGG CGCGGTGGAGGGCGACCGGACAGCGCCCACCCAGCCGCATTCAGCCATTTCGTTCGGCCCGGCCCCCCTCAGAGAAGCCG ATATGTGGGGCGCGACGCCGATCGATCAGCTCTATTGCCGGGTTCGTTTCCACCAGCTTCGCTACGAAGGCCGATACACG CCGCCTTCACTCCAAGGCACAATTGTGTATCCGGGCAATTTCGGCACGTTCAACTGGGGTTCTGTGGCTGTGGACCCCAA CCGCGACATCATGTTTGCGATGCCCGTCTATCTTGCCTTCGAGGTGAAACAGGTTCCTCGGCAGAACGAGCTTTCCCGGG TTGTGACACAGGAGGGCGAGGCGATCTTCAACGAGAATTTCGGTGCACCTTACGCGGCGCAGATGGGGCCGTTTTATTCG CCCCTTCAGCTTCCCTGCCAAAGGCCGCCTTGGGGCTATATCGCAGCGGTGGACCTGACCACGGGCGAAACCGTTTACAA GCAAGTAAACGGCACAGTGCGGGATCTTTCGCCCATTCCCCTGCCGTTTGAAATGGGCGTGCCGGGAATTGGCGGGCCGA TCGTTACCGCTGGCGGTGTAGCCTTTCTCTCGGGCACGCTCGACTATTATGTGCGCGGCTATGACCTGCGTACCGGCGAG GAGCTGTGGCGTGAGCGGCTGCCCGCCGGCGGCCAAGCCACGCCTTCCACCTATGTGGGCGAGGATGGCCGGCAATATCT GGTCGTGGTCGCCGGCGGCCACGGTTCCACCGGCACAAAGGCGGGCGATTCGATTATCGCTTATGCACTGCCGCAATAG
Upstream 100 bases:
>100_bases GTTTGCGAGCGTAGTTGTGCACGGTCGGCTGGCCCGGACTGTCGTGTAGTCCGCAATACTGCCCAACCACCCATGCCCCC AAAACCGTAGAGGCGCCGCC
Downstream 100 bases:
>100_bases CTCCGCATTAAGCCTGGAACAATGGCAGGCGCGGCAGGTTCACCCCTCGGAAGCACGGGAGATAACCATGGCCGAGGATG ATGCAAAGAAGCATGTGAAG
Product: quinoprotein glucose dehydrogenase
Products: NA
Alternate protein names: Glucose dehydrogenase [pyrroloquinoline-quinone] [H]
Number of amino acids: Translated: 852; Mature: 852
Protein sequence:
>852_residues MFRIILSVIIAVLGLVIAAGGVWLAVLGGSWFYILLGLLLVLSGALLLRRSASGLLLYGLTILLTLAWSVWEVGFDWWAL VPRGALILVLGVLLLLPPILRAMRVPEGRRASYGMNSGVLAASIFIAAIVGIYSMFQQPHDIDGAFPEQRIAVSPAPQQG DVPPGEWAAYGRTSFGQRYSPLDQITPENVSQLEVAWSYQTGEMRDENDPGETTYEVTPLMVNNTLYICTPFSTVIALDP VTGQEKWRFDPQLRQPPTETTQHMTCRGVSYHEAAPGDLPATSPTAQAAPETAPTGQAGAPDETAEIATSVDEITTQAAP VPQNIVTGQAEPGALSFVVTREEPPARVTLSQQCMKRLFVPTSDGRLITISADTGEICPGFGGDGTINLWANMPNVTPGS YYSTSPPLIAGRLVIIGGAVNDNEAITSPSGVIRAFDLYTGALVWNFDSKNPEATQPIAPDGVYSQNAPNSWSVASYDPN LGLAYFPMGNESPDQFGGNRGENTERYSSSVLALRADTGEVAWVFQTVHHDIWDYDVPAQPVLIDLTVDGQAVPALVQAT KQGDIFVLNRATGEPIFPIEERPTPQGAVEGDRTAPTQPHSAISFGPAPLREADMWGATPIDQLYCRVRFHQLRYEGRYT PPSLQGTIVYPGNFGTFNWGSVAVDPNRDIMFAMPVYLAFEVKQVPRQNELSRVVTQEGEAIFNENFGAPYAAQMGPFYS PLQLPCQRPPWGYIAAVDLTTGETVYKQVNGTVRDLSPIPLPFEMGVPGIGGPIVTAGGVAFLSGTLDYYVRGYDLRTGE ELWRERLPAGGQATPSTYVGEDGRQYLVVVAGGHGSTGTKAGDSIIAYALPQ
Sequences:
>Translated_852_residues MFRIILSVIIAVLGLVIAAGGVWLAVLGGSWFYILLGLLLVLSGALLLRRSASGLLLYGLTILLTLAWSVWEVGFDWWAL VPRGALILVLGVLLLLPPILRAMRVPEGRRASYGMNSGVLAASIFIAAIVGIYSMFQQPHDIDGAFPEQRIAVSPAPQQG DVPPGEWAAYGRTSFGQRYSPLDQITPENVSQLEVAWSYQTGEMRDENDPGETTYEVTPLMVNNTLYICTPFSTVIALDP VTGQEKWRFDPQLRQPPTETTQHMTCRGVSYHEAAPGDLPATSPTAQAAPETAPTGQAGAPDETAEIATSVDEITTQAAP VPQNIVTGQAEPGALSFVVTREEPPARVTLSQQCMKRLFVPTSDGRLITISADTGEICPGFGGDGTINLWANMPNVTPGS YYSTSPPLIAGRLVIIGGAVNDNEAITSPSGVIRAFDLYTGALVWNFDSKNPEATQPIAPDGVYSQNAPNSWSVASYDPN LGLAYFPMGNESPDQFGGNRGENTERYSSSVLALRADTGEVAWVFQTVHHDIWDYDVPAQPVLIDLTVDGQAVPALVQAT KQGDIFVLNRATGEPIFPIEERPTPQGAVEGDRTAPTQPHSAISFGPAPLREADMWGATPIDQLYCRVRFHQLRYEGRYT PPSLQGTIVYPGNFGTFNWGSVAVDPNRDIMFAMPVYLAFEVKQVPRQNELSRVVTQEGEAIFNENFGAPYAAQMGPFYS PLQLPCQRPPWGYIAAVDLTTGETVYKQVNGTVRDLSPIPLPFEMGVPGIGGPIVTAGGVAFLSGTLDYYVRGYDLRTGE ELWRERLPAGGQATPSTYVGEDGRQYLVVVAGGHGSTGTKAGDSIIAYALPQ >Mature_852_residues MFRIILSVIIAVLGLVIAAGGVWLAVLGGSWFYILLGLLLVLSGALLLRRSASGLLLYGLTILLTLAWSVWEVGFDWWAL VPRGALILVLGVLLLLPPILRAMRVPEGRRASYGMNSGVLAASIFIAAIVGIYSMFQQPHDIDGAFPEQRIAVSPAPQQG DVPPGEWAAYGRTSFGQRYSPLDQITPENVSQLEVAWSYQTGEMRDENDPGETTYEVTPLMVNNTLYICTPFSTVIALDP VTGQEKWRFDPQLRQPPTETTQHMTCRGVSYHEAAPGDLPATSPTAQAAPETAPTGQAGAPDETAEIATSVDEITTQAAP VPQNIVTGQAEPGALSFVVTREEPPARVTLSQQCMKRLFVPTSDGRLITISADTGEICPGFGGDGTINLWANMPNVTPGS YYSTSPPLIAGRLVIIGGAVNDNEAITSPSGVIRAFDLYTGALVWNFDSKNPEATQPIAPDGVYSQNAPNSWSVASYDPN LGLAYFPMGNESPDQFGGNRGENTERYSSSVLALRADTGEVAWVFQTVHHDIWDYDVPAQPVLIDLTVDGQAVPALVQAT KQGDIFVLNRATGEPIFPIEERPTPQGAVEGDRTAPTQPHSAISFGPAPLREADMWGATPIDQLYCRVRFHQLRYEGRYT PPSLQGTIVYPGNFGTFNWGSVAVDPNRDIMFAMPVYLAFEVKQVPRQNELSRVVTQEGEAIFNENFGAPYAAQMGPFYS PLQLPCQRPPWGYIAAVDLTTGETVYKQVNGTVRDLSPIPLPFEMGVPGIGGPIVTAGGVAFLSGTLDYYVRGYDLRTGE ELWRERLPAGGQATPSTYVGEDGRQYLVVVAGGHGSTGTKAGDSIIAYALPQ
Specific function: Gdh Is Probably Involved In Energy Conservation Rather Than In Sugar Metabolism. [C]
COG id: COG4993
COG function: function code G; Glucose dehydrogenase
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein; Periplasmic side [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial PQQ dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1786316, Length=867, Percent_Identity=42.2145328719723, Blast_Score=656, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017511 - InterPro: IPR019556 - InterPro: IPR019551 - InterPro: IPR018391 - InterPro: IPR002372 - InterPro: IPR011047 - InterPro: IPR001479 [H]
Pfam domain/function: PF01011 PQQ; PF10535 PQQ_C; PF10527 PQQ_N [H]
EC number: =1.1.5.2 [H]
Molecular weight: Translated: 91826; Mature: 91826
Theoretical pI: Translated: 4.35; Mature: 4.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFRIILSVIIAVLGLVIAAGGVWLAVLGGSWFYILLGLLLVLSGALLLRRSASGLLLYGL CHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH TILLTLAWSVWEVGFDWWALVPRGALILVLGVLLLLPPILRAMRVPEGRRASYGMNSGVL HHHHHHHHHHHHHCCCCEEHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH AASIFIAAIVGIYSMFQQPHDIDGAFPEQRIAVSPAPQQGDVPPGEWAAYGRTSFGQRYS HHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC PLDQITPENVSQLEVAWSYQTGEMRDENDPGETTYEVTPLMVNNTLYICTPFSTVIALDP CHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCEEEEECC VTGQEKWRFDPQLRQPPTETTQHMTCRGVSYHEAAPGDLPATSPTAQAAPETAPTGQAGA CCCCCCCCCCCCCCCCCCCHHCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PDETAEIATSVDEITTQAAPVPQNIVTGQAEPGALSFVVTREEPPARVTLSQQCMKRLFV CCHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCEEEEEEECCCCCCEEEHHHHHHHHHCC PTSDGRLITISADTGEICPGFGGDGTINLWANMPNVTPGSYYSTSPPLIAGRLVIIGGAV CCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEECCC NDNEAITSPSGVIRAFDLYTGALVWNFDSKNPEATQPIAPDGVYSQNAPNSWSVASYDPN CCCCCCCCCCHHEEEEEEEECEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC LGLAYFPMGNESPDQFGGNRGENTERYSSSVLALRADTGEVAWVFQTVHHDIWDYDVPAQ CCEEEEECCCCCHHHCCCCCCCCCHHHCCCEEEEEECCCCEEEEHHHHHHHHCCCCCCCC PVLIDLTVDGQAVPALVQATKQGDIFVLNRATGEPIFPIEERPTPQGAVEGDRTAPTQPH CEEEEEEECCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SAISFGPAPLREADMWGATPIDQLYCRVRFHQLRYEGRYTPPSLQGTIVYPGNFGTFNWG CCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCC SVAVDPNRDIMFAMPVYLAFEVKQVPRQNELSRVVTQEGEAIFNENFGAPYAAQMGPFYS EEEECCCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHCCCEEECCCCCCCCHHHCCCCCC PLQLPCQRPPWGYIAAVDLTTGETVYKQVNGTVRDLSPIPLPFEMGVPGIGGPIVTAGGV CCCCCCCCCCCCEEEEEEECCCHHHHHHHCCCHHCCCCCCCCHHCCCCCCCCCEEECCCH AFLSGTLDYYVRGYDLRTGEELWRERLPAGGQATPSTYVGEDGRQYLVVVAGGHGSTGTK HHHHCCEEEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCC AGDSIIAYALPQ CCCCEEEEECCC >Mature Secondary Structure MFRIILSVIIAVLGLVIAAGGVWLAVLGGSWFYILLGLLLVLSGALLLRRSASGLLLYGL CHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH TILLTLAWSVWEVGFDWWALVPRGALILVLGVLLLLPPILRAMRVPEGRRASYGMNSGVL HHHHHHHHHHHHHCCCCEEHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH AASIFIAAIVGIYSMFQQPHDIDGAFPEQRIAVSPAPQQGDVPPGEWAAYGRTSFGQRYS HHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC PLDQITPENVSQLEVAWSYQTGEMRDENDPGETTYEVTPLMVNNTLYICTPFSTVIALDP CHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCEEEEECC VTGQEKWRFDPQLRQPPTETTQHMTCRGVSYHEAAPGDLPATSPTAQAAPETAPTGQAGA CCCCCCCCCCCCCCCCCCCHHCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PDETAEIATSVDEITTQAAPVPQNIVTGQAEPGALSFVVTREEPPARVTLSQQCMKRLFV CCHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCEEEEEEECCCCCCEEEHHHHHHHHHCC PTSDGRLITISADTGEICPGFGGDGTINLWANMPNVTPGSYYSTSPPLIAGRLVIIGGAV CCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEECCC NDNEAITSPSGVIRAFDLYTGALVWNFDSKNPEATQPIAPDGVYSQNAPNSWSVASYDPN CCCCCCCCCCHHEEEEEEEECEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC LGLAYFPMGNESPDQFGGNRGENTERYSSSVLALRADTGEVAWVFQTVHHDIWDYDVPAQ CCEEEEECCCCCHHHCCCCCCCCCHHHCCCEEEEEECCCCEEEEHHHHHHHHCCCCCCCC PVLIDLTVDGQAVPALVQATKQGDIFVLNRATGEPIFPIEERPTPQGAVEGDRTAPTQPH CEEEEEEECCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SAISFGPAPLREADMWGATPIDQLYCRVRFHQLRYEGRYTPPSLQGTIVYPGNFGTFNWG CCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCC SVAVDPNRDIMFAMPVYLAFEVKQVPRQNELSRVVTQEGEAIFNENFGAPYAAQMGPFYS EEEECCCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHCCCEEECCCCCCCCHHHCCCCCC PLQLPCQRPPWGYIAAVDLTTGETVYKQVNGTVRDLSPIPLPFEMGVPGIGGPIVTAGGV CCCCCCCCCCCCEEEEEEECCCHHHHHHHCCCHHCCCCCCCCHHCCCCCCCCCEEECCCH AFLSGTLDYYVRGYDLRTGEELWRERLPAGGQATPSTYVGEDGRQYLVVVAGGHGSTGTK HHHHCCEEEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCC AGDSIIAYALPQ CCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1833618 [H]