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The map label for this gene is yhfW [H]

Identifier: 110635836

GI number: 110635836

Start: 3778650

End: 3780176

Strand: Reverse

Name: yhfW [H]

Synonym: Meso_3508

Alternate gene names: 110635836

Gene position: 3780176-3778650 (Counterclockwise)

Preceding gene: 110635837

Following gene: 110635835

Centisome position: 85.67

GC content: 59.59

Gene sequence:

>1527_bases
ATGAAAACCGGTTTTCCGTTCTGGTTCGACGGCGTGATCCCCAAAAGCTTTCCGACGCTCGCCGAGGACCTGTCCGTGGA
CGTGGCAATCATTGGCGGTGGCATTGTGGGCCTGCACTGCGCCCATCGGCTGGCAGGTTCGGGACTAAAGGTAGTCATTC
TGGAGGCGCGGCGGATCGGGCGGCAGGCGACGGGACGATCAACCGCGAAAGTCACGTCTCAGCATGGGCAAAGATATACG
AGCTTAAAGAAAAAGTTCGGGGAGGAGAGGGCGCGCATTTACGCAGAAGCGAACCAGGCGGCAGTCGGCGAAATCATGGC
GCTTGCCAAGAGCATGGAAGGGCAGGCAGGGCTTGAGCCGCGGTCCGCCTATATCTATGCAACGGACGACAAGCAGGCGG
AACAGCTCGAAAAAGAAGGGGAAATCGCACGAGAGCTGGGGCTGCCCGCGAAAATCGTTCCCTATGCCGGGCTGCCGTTC
AAGACGACGGCACTGCTCAAATATCACGGTCAATATCAGTTCAACCCCTACCTATACCTTCTCGGGCTAGCCGAGCAGGT
GACGCGCGAGATCCCCATCTACGAGCAGAGCCGCGTCACGGACATCTCCGGCGGCGGCCCGATCCGGCTCAGCGTCAACG
GAAGGTCGGTTAGCGCGGGTCATGTGGTTGTCGCAACGCAAATGCCGGTGGTGAACGAAGGCAAGTTCTTCGCCAAGGCA
TTCCCCTTCGCTCATCCCGTAGCCGCCGCACCGCTGCCGGAAGGTCACGGTCTGGACGGAATGTTCATCAGTGCCGGCAC
TCCTTCCCATTCACTAAGAACCGCGGTGAAGGATGGACAAACCTATCTCATCGCGGCAGGCGGCGAGTTCAAGAGCGGCG
AACCCGACAAGGAGCGGGAAATGGTGGAAGACCTACGCTCTTTCCTTTCGCAGCATTTCGGAATGAACGCACTCACACAT
CTTTGGACAAACGAGGATTTCCGCCCCATGGACGGAGCAGCTTTTATCGGCCCGGCAAACAGCCGTCATGAAAACCTCCT
CGTTGCCACTGGTTTCGATGCCTGGGGGATAACCCAGGGCGTGGTGGGGGGCGGAATACTTGCCGAGCGCATTTTAGGGC
GCACGCTTCCCGCCGCAGACCTCTTCGACGCCACGCGCGTAAAGCCGCTGGCTGGGGCAGCAGAATTTACGAAGGGCAAT
GTCGAGGCGGCCGGACACCTGATCCGGGATCGGTTGCTAAAACGTGCCACCGTTCCCCTCGACAGCATCGCGCCGGGCGA
AGGTGGCATTATTGCCCACAATGGTGAGCAGCTCGCCGTGTGCCGCCAAGAAGACGGATCGCTAATTACCTTATCAGCCA
CATGCACGCATATGGGCTGCATCGTCGGCTGGAACGAGATCGATCGCACTTGGGATTGCCCGTGCCACGGCTCGCGTTTC
GATGAATGGGGAGAGGTGATCGCGGGGCCGGCAGTTTCTGCGCTGAAACCGCGCGATATTCGGGATTTGGAAAAAGGGGG
ACCATGA

Upstream 100 bases:

>100_bases
TCGCCGCGGGCCTCAACGAGCTGGAAGGTGCCTCGAAGAGCATTTTCAGCGGCGGGACATCTGCCGATGCTGAAGACAAT
ATCACCGCGAGGAGACGCGT

Downstream 100 bases:

>100_bases
AGGTTCTTGTCACAGGCGCAACGGGGCTTATCGGCAGCACAGTTTGCGCCCGGCTAATGTCGGAGGGTCACCACGTGATT
GCCGTGGTGCGGCCGGGCAG

Product: FAD dependent oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 508; Mature: 508

Protein sequence:

>508_residues
MKTGFPFWFDGVIPKSFPTLAEDLSVDVAIIGGGIVGLHCAHRLAGSGLKVVILEARRIGRQATGRSTAKVTSQHGQRYT
SLKKKFGEERARIYAEANQAAVGEIMALAKSMEGQAGLEPRSAYIYATDDKQAEQLEKEGEIARELGLPAKIVPYAGLPF
KTTALLKYHGQYQFNPYLYLLGLAEQVTREIPIYEQSRVTDISGGGPIRLSVNGRSVSAGHVVVATQMPVVNEGKFFAKA
FPFAHPVAAAPLPEGHGLDGMFISAGTPSHSLRTAVKDGQTYLIAAGGEFKSGEPDKEREMVEDLRSFLSQHFGMNALTH
LWTNEDFRPMDGAAFIGPANSRHENLLVATGFDAWGITQGVVGGGILAERILGRTLPAADLFDATRVKPLAGAAEFTKGN
VEAAGHLIRDRLLKRATVPLDSIAPGEGGIIAHNGEQLAVCRQEDGSLITLSATCTHMGCIVGWNEIDRTWDCPCHGSRF
DEWGEVIAGPAVSALKPRDIRDLEKGGP

Sequences:

>Translated_508_residues
MKTGFPFWFDGVIPKSFPTLAEDLSVDVAIIGGGIVGLHCAHRLAGSGLKVVILEARRIGRQATGRSTAKVTSQHGQRYT
SLKKKFGEERARIYAEANQAAVGEIMALAKSMEGQAGLEPRSAYIYATDDKQAEQLEKEGEIARELGLPAKIVPYAGLPF
KTTALLKYHGQYQFNPYLYLLGLAEQVTREIPIYEQSRVTDISGGGPIRLSVNGRSVSAGHVVVATQMPVVNEGKFFAKA
FPFAHPVAAAPLPEGHGLDGMFISAGTPSHSLRTAVKDGQTYLIAAGGEFKSGEPDKEREMVEDLRSFLSQHFGMNALTH
LWTNEDFRPMDGAAFIGPANSRHENLLVATGFDAWGITQGVVGGGILAERILGRTLPAADLFDATRVKPLAGAAEFTKGN
VEAAGHLIRDRLLKRATVPLDSIAPGEGGIIAHNGEQLAVCRQEDGSLITLSATCTHMGCIVGWNEIDRTWDCPCHGSRF
DEWGEVIAGPAVSALKPRDIRDLEKGGP
>Mature_508_residues
MKTGFPFWFDGVIPKSFPTLAEDLSVDVAIIGGGIVGLHCAHRLAGSGLKVVILEARRIGRQATGRSTAKVTSQHGQRYT
SLKKKFGEERARIYAEANQAAVGEIMALAKSMEGQAGLEPRSAYIYATDDKQAEQLEKEGEIARELGLPAKIVPYAGLPF
KTTALLKYHGQYQFNPYLYLLGLAEQVTREIPIYEQSRVTDISGGGPIRLSVNGRSVSAGHVVVATQMPVVNEGKFFAKA
FPFAHPVAAAPLPEGHGLDGMFISAGTPSHSLRTAVKDGQTYLIAAGGEFKSGEPDKEREMVEDLRSFLSQHFGMNALTH
LWTNEDFRPMDGAAFIGPANSRHENLLVATGFDAWGITQGVVGGGILAERILGRTLPAADLFDATRVKPLAGAAEFTKGN
VEAAGHLIRDRLLKRATVPLDSIAPGEGGIIAHNGEQLAVCRQEDGSLITLSATCTHMGCIVGWNEIDRTWDCPCHGSRF
DEWGEVIAGPAVSALKPRDIRDLEKGGP

Specific function: Unknown

COG id: COG0665

COG function: function code E; Glycine/D-amino acid oxidases (deaminating)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Rieske domain [H]

Homologues:

Organism=Escherichia coli, GI1787559, Length=389, Percent_Identity=23.6503856041131, Blast_Score=72, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR017941
- InterPro:   IPR005805 [H]

Pfam domain/function: PF01266 DAO; PF00355 Rieske [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 54576; Mature: 54576

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS00200 RIESKE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTGFPFWFDGVIPKSFPTLAEDLSVDVAIIGGGIVGLHCAHRLAGSGLKVVILEARRIG
CCCCCCEEECCCCCCCCHHHHHHCCEEEEEECCCHHHHHHHHHHCCCCCEEEEEEHHHHC
RQATGRSTAKVTSQHGQRYTSLKKKFGEERARIYAEANQAAVGEIMALAKSMEGQAGLEP
CHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHEECCCCHHHHHHHHHHHHHCCCCCCCCC
RSAYIYATDDKQAEQLEKEGEIARELGLPAKIVPYAGLPFKTTALLKYHGQYQFNPYLYL
CCEEEEECCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEEECCCEECCCEEEE
LGLAEQVTREIPIYEQSRVTDISGGGPIRLSVNGRSVSAGHVVVATQMPVVNEGKFFAKA
EEHHHHHHHHCCCCCCCCEEEECCCCEEEEEECCCEEECCEEEEEECCCEECCCCHHHHH
FPFAHPVAAAPLPEGHGLDGMFISAGTPSHSLRTAVKDGQTYLIAAGGEFKSGEPDKERE
CCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHCCCCEEEEEECCCCCCCCCHHHHH
MVEDLRSFLSQHFGMNALTHLWTNEDFRPMDGAAFIGPANSRHENLLVATGFDAWGITQG
HHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCEEEECCCCCCCCEEEEEECCCHHCCHHH
VVGGGILAERILGRTLPAADLFDATRVKPLAGAAEFTKGNVEAAGHLIRDRLLKRATVPL
HHCCHHHHHHHHHCCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCC
DSIAPGEGGIIAHNGEQLAVCRQEDGSLITLSATCTHMGCIVGWNEIDRTWDCPCHGSRF
CCCCCCCCCEEEECCCEEEEEEECCCCEEEEEEHHHHHCEEEECHHCCCCCCCCCCCCCC
DEWGEVIAGPAVSALKPRDIRDLEKGGP
HHHHHHHCCCCHHCCCCCCHHHHHCCCC
>Mature Secondary Structure
MKTGFPFWFDGVIPKSFPTLAEDLSVDVAIIGGGIVGLHCAHRLAGSGLKVVILEARRIG
CCCCCCEEECCCCCCCCHHHHHHCCEEEEEECCCHHHHHHHHHHCCCCCEEEEEEHHHHC
RQATGRSTAKVTSQHGQRYTSLKKKFGEERARIYAEANQAAVGEIMALAKSMEGQAGLEP
CHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHEECCCCHHHHHHHHHHHHHCCCCCCCCC
RSAYIYATDDKQAEQLEKEGEIARELGLPAKIVPYAGLPFKTTALLKYHGQYQFNPYLYL
CCEEEEECCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEEECCCEECCCEEEE
LGLAEQVTREIPIYEQSRVTDISGGGPIRLSVNGRSVSAGHVVVATQMPVVNEGKFFAKA
EEHHHHHHHHCCCCCCCCEEEECCCCEEEEEECCCEEECCEEEEEECCCEECCCCHHHHH
FPFAHPVAAAPLPEGHGLDGMFISAGTPSHSLRTAVKDGQTYLIAAGGEFKSGEPDKERE
CCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHCCCCEEEEEECCCCCCCCCHHHHH
MVEDLRSFLSQHFGMNALTHLWTNEDFRPMDGAAFIGPANSRHENLLVATGFDAWGITQG
HHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCEEEECCCCCCCCEEEEEECCCHHCCHHH
VVGGGILAERILGRTLPAADLFDATRVKPLAGAAEFTKGNVEAAGHLIRDRLLKRATVPL
HHCCHHHHHHHHHCCCCCHHHHHHHCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCC
DSIAPGEGGIIAHNGEQLAVCRQEDGSLITLSATCTHMGCIVGWNEIDRTWDCPCHGSRF
CCCCCCCCCEEEECCCEEEEEEECCCCEEEEEEHHHHHCEEEECHHCCCCCCCCCCCCCC
DEWGEVIAGPAVSALKPRDIRDLEKGGP
HHHHHHHCCCCHHCCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]