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The map label for this gene is secB

Identifier: 110635811

GI number: 110635811

Start: 3759068

End: 3759574

Strand: Reverse

Name: secB

Synonym: Meso_3483

Alternate gene names: 110635811

Gene position: 3759574-3759068 (Counterclockwise)

Preceding gene: 110635812

Following gene: 110635804

Centisome position: 85.2

GC content: 55.42

Gene sequence:

>507_bases
ATGGCTGACCAGCCCAGCGGAAATAACGACGCAAAGCAGGCGGAAACGAACGGAAATACCGTTCCGGCGAGCCTGAACGT
GCTGACGCAGTATATCAAGGACCTCTCTTTCGAGAGCCCCGGAGCGCCTCAGTCCTTGCGTGCTCGGGACAAAGCGCCTT
CGATCAACATCAATGTGAATGTCAATGCAAATCCGCTGGGCGGCACAGACTATGATGTCTTGCTGACGCTTACGGCAAAG
GCAGAAGCCGACAATGTGGTGCTTTTCAATGTCGAGTTGATCTACGGGGGCGTGTTTCGCATTCAGGGATTCCCCCAGGA
GCATATGCTGCCGCTTCTCTTCATTGAATGTCCGCGATTGCTTTTCCCGTTCGCGCGGCAAATCATTGCGGATGCGACGC
GAAATGGAGGCTTCCCGCCCCTCATGATTGACCCGATCGATTTTGCGCGCATGTTCCAGCAGAGGCTGGCCGAGGAAGAA
GCCCGGAGGAAAGTTCAGGTTTCCTGA

Upstream 100 bases:

>100_bases
GTAGACAATCCAAACTTGTGTTGCCAGGACCAGCGTGCTAGCGAACGCCACGATTTTGCAGCCCAAGCGGGCAGCCCAAC
ATTCCAGAGGATCGAAGCGG

Downstream 100 bases:

>100_bases
AGATACTTCACCTCAAAACGAAAGCCGGGTCATGACCCGGCTTTTTTTGAACCGAATTAAGCAGTTTCCACGCGCTCAGC
GGCTTCCGCAGGCATCAGCT

Product: preprotein translocase subunit SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 167

Protein sequence:

>168_residues
MADQPSGNNDAKQAETNGNTVPASLNVLTQYIKDLSFESPGAPQSLRARDKAPSININVNVNANPLGGTDYDVLLTLTAK
AEADNVVLFNVELIYGGVFRIQGFPQEHMLPLLFIECPRLLFPFARQIIADATRNGGFPPLMIDPIDFARMFQQRLAEEE
ARRKVQVS

Sequences:

>Translated_168_residues
MADQPSGNNDAKQAETNGNTVPASLNVLTQYIKDLSFESPGAPQSLRARDKAPSININVNVNANPLGGTDYDVLLTLTAK
AEADNVVLFNVELIYGGVFRIQGFPQEHMLPLLFIECPRLLFPFARQIIADATRNGGFPPLMIDPIDFARMFQQRLAEEE
ARRKVQVS
>Mature_167_residues
ADQPSGNNDAKQAETNGNTVPASLNVLTQYIKDLSFESPGAPQSLRARDKAPSININVNVNANPLGGTDYDVLLTLTAKA
EADNVVLFNVELIYGGVFRIQGFPQEHMLPLLFIECPRLLFPFARQIIADATRNGGFPPLMIDPIDFARMFQQRLAEEEA
RRKVQVS

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family

Homologues:

Organism=Escherichia coli, GI1790038, Length=141, Percent_Identity=30.4964539007092, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECB_MESSB (Q11CM1)

Other databases:

- EMBL:   CP000390
- RefSeq:   YP_676019.1
- ProteinModelPortal:   Q11CM1
- SMR:   Q11CM1
- STRING:   Q11CM1
- GeneID:   4179891
- GenomeReviews:   CP000390_GR
- KEGG:   mes:Meso_3483
- NMPDR:   fig|266779.1.peg.1051
- eggNOG:   COG1952
- HOGENOM:   HBG294212
- OMA:   GFPPLMI
- PhylomeDB:   Q11CM1
- ProtClustDB:   PRK05751
- BioCyc:   MSP266779:MESO_3483-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00821
- InterPro:   IPR003708
- Gene3D:   G3DSA:3.10.420.10
- PRINTS:   PR01594
- TIGRFAMs:   TIGR00809

Pfam domain/function: PF02556 SecB; SSF54611 SecB

EC number: NA

Molecular weight: Translated: 18529; Mature: 18398

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADQPSGNNDAKQAETNGNTVPASLNVLTQYIKDLSFESPGAPQSLRARDKAPSININVN
CCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCEEEEEE
VNANPLGGTDYDVLLTLTAKAEADNVVLFNVELIYGGVFRIQGFPQEHMLPLLFIECPRL
ECCCCCCCCCEEEEEEEEECCCCCCEEEEEEEEEECCEEEECCCCHHHCCHHHHHHCHHH
LFPFARQIIADATRNGGFPPLMIDPIDFARMFQQRLAEEEARRKVQVS
HHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ADQPSGNNDAKQAETNGNTVPASLNVLTQYIKDLSFESPGAPQSLRARDKAPSININVN
CCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCEEEEEE
VNANPLGGTDYDVLLTLTAKAEADNVVLFNVELIYGGVFRIQGFPQEHMLPLLFIECPRL
ECCCCCCCCCEEEEEEEEECCCCCCEEEEEEEEEECCEEEECCCCHHHCCHHHHHHCHHH
LFPFARQIIADATRNGGFPPLMIDPIDFARMFQQRLAEEEARRKVQVS
HHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA