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The map label for this gene is yobV [H]

Identifier: 110635760

GI number: 110635760

Start: 3711383

End: 3712087

Strand: Reverse

Name: yobV [H]

Synonym: Meso_3432

Alternate gene names: 110635760

Gene position: 3712087-3711383 (Counterclockwise)

Preceding gene: 110635761

Following gene: 110635758

Centisome position: 84.13

GC content: 62.98

Gene sequence:

>705_bases
ATGCGGCGCGCCGACCGTCTTTTTCAGATCGTCCAGCATTTGCGTGGCGGCAGGTTGGTGACAGCGCGCATTCTTTCGGA
GCGGCTCGAAGTTTCCGAACGCACGATCTATCGCGACATCGCAGACCTGCAATCGACAGGCGTGCCGATCGACGGCGAGG
CTGGTGTTGGCTATCTGATGCGCGAAGGCTTCGAGCTGCCGCCGCTGATGTTCACGCGTGATGAGATCGTTGCTCTCGTC
GCCGGCGCCCGCATGGTGCGCGCGTTTGGCGGCGCGGCGATGGCTCGCGCAGCTGAAGAGGCGCTGATCAAAATTGGCAC
CGTATTGCCGCAAAATGAGCGTGATCGGATCTCGCGCACGGAAATCCACACGCCCAATTGGGGAATCAGCGAGGCGGAAC
GCCAGGCGATCGACGTGATGGAACGAGCCGTGGAGCAGCGCCGCGCGCTTTCGCTCGATTACCGCGATGAGGTGGGCCAG
GTTACCCAGCGCGATGTGCGCCCGCTGGGGCTCTGGTTCTGGGGAAAGGTCTGGACGCTTGTCGCCTGCTGCGAGCTGCG
CGATGATTTCCGCACCTTCCGCCTTGATCGGATTGTCGCGATGGGGGACGCCGGCCGTGGGTTCAAGCCTGAGCGAGGCA
AGCAACTGGCCGATTTTTACCGCCGCATGGAAATGCACGAGATCGGCGGCAATGGGCACGGGTAG

Upstream 100 bases:

>100_bases
GGTGGTATCACCCATCATCCCTATTCCTGCCGGACGGTTCGTGTATTGTCTCGATCCTGACGGCAACAGCTTCGGGCTCT
TTACTTGAGGAGCAGCCTAT

Downstream 100 bases:

>100_bases
GCTGCAACGCCCAAGGAAAAGGGCTGCCCTTTCGGACAGCCCCGTGCATTCCATTCCTTGACGCGGCCAGCGGCTTGAGC
AATCACGCCGCGCCGCGCGT

Product: helix-turn-helix, type 11

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MRRADRLFQIVQHLRGGRLVTARILSERLEVSERTIYRDIADLQSTGVPIDGEAGVGYLMREGFELPPLMFTRDEIVALV
AGARMVRAFGGAAMARAAEEALIKIGTVLPQNERDRISRTEIHTPNWGISEAERQAIDVMERAVEQRRALSLDYRDEVGQ
VTQRDVRPLGLWFWGKVWTLVACCELRDDFRTFRLDRIVAMGDAGRGFKPERGKQLADFYRRMEMHEIGGNGHG

Sequences:

>Translated_234_residues
MRRADRLFQIVQHLRGGRLVTARILSERLEVSERTIYRDIADLQSTGVPIDGEAGVGYLMREGFELPPLMFTRDEIVALV
AGARMVRAFGGAAMARAAEEALIKIGTVLPQNERDRISRTEIHTPNWGISEAERQAIDVMERAVEQRRALSLDYRDEVGQ
VTQRDVRPLGLWFWGKVWTLVACCELRDDFRTFRLDRIVAMGDAGRGFKPERGKQLADFYRRMEMHEIGGNGHG
>Mature_234_residues
MRRADRLFQIVQHLRGGRLVTARILSERLEVSERTIYRDIADLQSTGVPIDGEAGVGYLMREGFELPPLMFTRDEIVALV
AGARMVRAFGGAAMARAAEEALIKIGTVLPQNERDRISRTEIHTPNWGISEAERQAIDVMERAVEQRRALSLDYRDEVGQ
VTQRDVRPLGLWFWGKVWTLVACCELRDDFRTFRLDRIVAMGDAGRGFKPERGKQLADFYRRMEMHEIGGNGHG

Specific function: Unknown

COG id: COG2378

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013196
- InterPro:   IPR001034
- InterPro:   IPR011991 [H]

Pfam domain/function: PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 26613; Mature: 26613

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRADRLFQIVQHLRGGRLVTARILSERLEVSERTIYRDIADLQSTGVPIDGEAGVGYLM
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
REGFELPPLMFTRDEIVALVAGARMVRAFGGAAMARAAEEALIKIGTVLPQNERDRISRT
HCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
EIHTPNWGISEAERQAIDVMERAVEQRRALSLDYRDEVGQVTQRDVRPLGLWFWGKVWTL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
VACCELRDDFRTFRLDRIVAMGDAGRGFKPERGKQLADFYRRMEMHEIGGNGHG
HHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MRRADRLFQIVQHLRGGRLVTARILSERLEVSERTIYRDIADLQSTGVPIDGEAGVGYLM
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
REGFELPPLMFTRDEIVALVAGARMVRAFGGAAMARAAEEALIKIGTVLPQNERDRISRT
HCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
EIHTPNWGISEAERQAIDVMERAVEQRRALSLDYRDEVGQVTQRDVRPLGLWFWGKVWTL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
VACCELRDDFRTFRLDRIVAMGDAGRGFKPERGKQLADFYRRMEMHEIGGNGHG
HHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]