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The map label for this gene is ymdB [H]

Identifier: 110635524

GI number: 110635524

Start: 3464849

End: 3465673

Strand: Reverse

Name: ymdB [H]

Synonym: Meso_3195

Alternate gene names: 110635524

Gene position: 3465673-3464849 (Counterclockwise)

Preceding gene: 110635525

Following gene: 110635523

Centisome position: 78.54

GC content: 62.91

Gene sequence:

>825_bases
ATGCGTATCTTATTTCTTGGTGACATGGTCGGCCGTACGGGCCGCACCGCCGTCTGGGAGCGCCTTCCTGGCCTCATCTC
GGACTTTAGGCTCGATTTCGTGGTGGTGAACGGCGAAAACGCCGCGGGCGGTTTCGGCATCACCGAGGAGATTTTCCGCA
CTACGCTGCAGGCTGGCGCGGATGTGGTGACGACGGGGAACCATGTGTGGGACCAGCGGGAGGCGTTGAGTTTCGCGCCG
CGCGAGGAGCGGTTTCTCCGCCCCGCCAACTTTCCGAAGGGCACGCCAGGGCGCGGCTCCGGCCTCTATATCGCCAAGAA
CGGCGCGCGTGTGCTCGTGGCCAATATCATGGGCCGGGTGTTCATGCATCCCGAGCTGGACGATCCGTTCCGCACCGCCG
AAAACGAGCTTGCCGCGTGCCATCTCGGCGAGCAGGCGGATGCGGCGATCATCGACTTTCATGCCGAAGCCACGTCCGAG
AAGATCTGTTTCGGCCATTTCGTGGACGGGCGCGTGAGCGCTGTTATCGGCACGCATACGCATCAGCCCACGGCGGACCA
CCAGATCCTCACCGGGGGCACCGCCTATATTAGCGATGCCGGGATGTGCGGTGATTACGATTCCTCGCTGGGGATGGATA
AGGAAGAGCCTCTCAACCGCTTTGTCAGCAAGGTACCCAAAAACCGCTTCGAGGCGGCCACGGGTCCTGCCACCATCTGC
GGTGTCGGATTGGAGGTATCGGAGCGCACCGGCCTTGCGGAAAAGATCGCGCCGCTGAGACTGGGACCGCGGCTTGAGGA
GACCTTTCCCGCCTTCTGGCGTTGA

Upstream 100 bases:

>100_bases
AGTCCCGGAAGTTCCCGACGAGGCACATGACATAGCGCTTCCCGAAATCCTCACCGAAAGCGGCTTGCGCCGGTTCCCCC
CGCCCCTGTAAGAGCAGGCG

Downstream 100 bases:

>100_bases
CGGGGAACAAATGCCCCCCTAACTCTGCGAAGCCTCAGACTTCAACCCCACGCAGGAATCCCCGATGGAATGGTTGCTTT
CGCAATTTGACTTCGTCTCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MRILFLGDMVGRTGRTAVWERLPGLISDFRLDFVVVNGENAAGGFGITEEIFRTTLQAGADVVTTGNHVWDQREALSFAP
REERFLRPANFPKGTPGRGSGLYIAKNGARVLVANIMGRVFMHPELDDPFRTAENELAACHLGEQADAAIIDFHAEATSE
KICFGHFVDGRVSAVIGTHTHQPTADHQILTGGTAYISDAGMCGDYDSSLGMDKEEPLNRFVSKVPKNRFEAATGPATIC
GVGLEVSERTGLAEKIAPLRLGPRLEETFPAFWR

Sequences:

>Translated_274_residues
MRILFLGDMVGRTGRTAVWERLPGLISDFRLDFVVVNGENAAGGFGITEEIFRTTLQAGADVVTTGNHVWDQREALSFAP
REERFLRPANFPKGTPGRGSGLYIAKNGARVLVANIMGRVFMHPELDDPFRTAENELAACHLGEQADAAIIDFHAEATSE
KICFGHFVDGRVSAVIGTHTHQPTADHQILTGGTAYISDAGMCGDYDSSLGMDKEEPLNRFVSKVPKNRFEAATGPATIC
GVGLEVSERTGLAEKIAPLRLGPRLEETFPAFWR
>Mature_274_residues
MRILFLGDMVGRTGRTAVWERLPGLISDFRLDFVVVNGENAAGGFGITEEIFRTTLQAGADVVTTGNHVWDQREALSFAP
REERFLRPANFPKGTPGRGSGLYIAKNGARVLVANIMGRVFMHPELDDPFRTAENELAACHLGEQADAAIIDFHAEATSE
KICFGHFVDGRVSAVIGTHTHQPTADHQILTGGTAYISDAGMCGDYDSSLGMDKEEPLNRFVSKVPKNRFEAATGPATIC
GVGLEVSERTGLAEKIAPLRLGPRLEETFPAFWR

Specific function: Unknown

COG id: COG1692

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005235 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29817; Mature: 29817

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILFLGDMVGRTGRTAVWERLPGLISDFRLDFVVVNGENAAGGFGITEEIFRTTLQAGA
CEEEEEEHHHCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCHHHHHHHHHHHCCC
DVVTTGNHVWDQREALSFAPREERFLRPANFPKGTPGRGSGLYIAKNGARVLVANIMGRV
CEEECCCHHHCHHHHHHCCCCHHHHCCCCCCCCCCCCCCCEEEEECCCCEEEHHHHHHHH
FMHPELDDPFRTAENELAACHLGEQADAAIIDFHAEATSEKICFGHFVDGRVSAVIGTHT
EECCCCCCHHHHHHHHHEEEECCCCCCEEEEEEECCCCCCCEEEEEECCCEEEEEEECCC
HQPTADHQILTGGTAYISDAGMCGDYDSSLGMDKEEPLNRFVSKVPKNRFEAATGPATIC
CCCCCCCEEEECCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCCCCEEE
GVGLEVSERTGLAEKIAPLRLGPRLEETFPAFWR
ECCCEEHHHCCHHHHHHCCCCCCCHHHHCHHHCC
>Mature Secondary Structure
MRILFLGDMVGRTGRTAVWERLPGLISDFRLDFVVVNGENAAGGFGITEEIFRTTLQAGA
CEEEEEEHHHCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCHHHHHHHHHHHCCC
DVVTTGNHVWDQREALSFAPREERFLRPANFPKGTPGRGSGLYIAKNGARVLVANIMGRV
CEEECCCHHHCHHHHHHCCCCHHHHCCCCCCCCCCCCCCCEEEEECCCCEEEHHHHHHHH
FMHPELDDPFRTAENELAACHLGEQADAAIIDFHAEATSEKICFGHFVDGRVSAVIGTHT
EECCCCCCHHHHHHHHHEEEECCCCCCEEEEEEECCCCCCCEEEEEECCCEEEEEEECCC
HQPTADHQILTGGTAYISDAGMCGDYDSSLGMDKEEPLNRFVSKVPKNRFEAATGPATIC
CCCCCCCEEEECCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCCCCEEE
GVGLEVSERTGLAEKIAPLRLGPRLEETFPAFWR
ECCCEEHHHCCHHHHHHCCCCCCCHHHHCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]