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The map label for this gene is xylH [H]

Identifier: 110635442

GI number: 110635442

Start: 3380289

End: 3381602

Strand: Reverse

Name: xylH [H]

Synonym: Meso_3113

Alternate gene names: 110635442

Gene position: 3381602-3380289 (Counterclockwise)

Preceding gene: 110635443

Following gene: 110635441

Centisome position: 76.64

GC content: 62.48

Gene sequence:

>1314_bases
ATGACGGATGTAACCTCCCATGCGCTTTCAAAAAAAGCTGCCGCAGTGAACAGCAGCCTGCCTCAGCGCCTTCTCAGGGC
GACGGAGCTCGACACGCGCATGCTTGGCATGGTCGGCGCGCTCGCCGTCATCTGGATCGGCTTTCATATCGTCTCCGGCG
GGTTGTTCCTTACGCCCCGCAATCTCTGGAACCTGTCGGTCCAATCCGCATCGGTCGCCATCATGTCCACCGGCATGGTG
CTGGTGATCGTCACGCGCAACATCGACCTGTCGGTGGGCTCGCTGCTCGGATTCGTCGGCATGGTCATGGGTGTGACCCA
GACCGAAATCCTGCCGCAATGGCTTGGCTTCGGTCACTTAGCAATCTGGATCGCAGCAATTCTGGTGGGTGTTGCGCTTG
GAGCGCTTATCGGCGCAATGCAAGGGTACATCATCGCCTATCTGGCCGTGCCGTCATTCATCGTGACGCTGGGCGGGCTG
CTCGTCTGGCGCGGTGCGGCTTGGTGGGTCACCAGCGGCCGCACCGTGGCGCCGCTCGATGCCACATACCGCTTGATGGG
CGGCGGCCCAGATGGCGCCATCGGTGCGTTCTGGAGCTGGGTGGTCGGCCTGATCGCCTGTGTTGCGCTCCTGCTCATGC
TGGCCAATGGCCGAAAGCAGCGGCGCAAATTTCACTTCCCGCTGCGGCCTGTCTGGGCCGAAAGCCTTCTGGCGGTTATG
GGCTGCGCTTTCATCCTGGGGGCCGTGGCCGTTGCCAATTCCTATCCCTGGCCTTCGGCCATCGTCCGGCGGTATGCGAC
AGAAAACAACATTACCGTGCCCGAAGGAGGACTCTTCATCGCCCATGGCATCGCGATCCCGGTGCTCATCGCCGTGGGAG
TCGGTGTCGTGATGACCTTTCTTGCAAACCGAACGCGGTTCGGCCGCTACGTCTTCGCCATCGGGGGCAATCCCGAAGCG
GCGGTGCTCGCCGGCATCAACACGCGTTGGGTGACGATGAAGGTTTTCATCCTCATGGGTGCGCTTGTGGGGATTTCCAG
CGCCATTTCGACGGCTCGCCTTAACGCCGCCACCAACGCGATGGGCACGCTCGATGAATTGCTCGTGATCGCGGCGGCCG
TTATCGGCGGCACATCGCTTGGCGGCGGCATCGGGACGATCGCCGGCGCCATGATCGGCGCCGTCCTGATGCAGTCGCTT
GCCAGCGGCATGATTCTGCTCGGCGTCGACACGCCGTTGCAAAACATCGTCGTTGGCATCGTGCTGGTGGTCGCCGTGTG
GCTCGACACGCTCTACCGCAAGCGCGTGAAATAA

Upstream 100 bases:

>100_bases
GGCTGAAAAGCGCTATAGCGGCGCAGAACGCCGCGGTTTGAGCGACCGCGGCGTTCTGCGTATCGGTCCCGGCCGTCTTG
GCCGGACGGAGGAGACCAAT

Downstream 100 bases:

>100_bases
CGGGAGGCCGCGATGGATACTGGGACACCGCTCGTTGAAATGAAGAACATCTCGATCGCCTTCGGCGGCATTCATGCCGT
CGAGAACGTATCGGTGGACC

Product: inner-membrane translocator

Products: ADP; phosphate; xylose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 437; Mature: 436

Protein sequence:

>437_residues
MTDVTSHALSKKAAAVNSSLPQRLLRATELDTRMLGMVGALAVIWIGFHIVSGGLFLTPRNLWNLSVQSASVAIMSTGMV
LVIVTRNIDLSVGSLLGFVGMVMGVTQTEILPQWLGFGHLAIWIAAILVGVALGALIGAMQGYIIAYLAVPSFIVTLGGL
LVWRGAAWWVTSGRTVAPLDATYRLMGGGPDGAIGAFWSWVVGLIACVALLLMLANGRKQRRKFHFPLRPVWAESLLAVM
GCAFILGAVAVANSYPWPSAIVRRYATENNITVPEGGLFIAHGIAIPVLIAVGVGVVMTFLANRTRFGRYVFAIGGNPEA
AVLAGINTRWVTMKVFILMGALVGISSAISTARLNAATNAMGTLDELLVIAAAVIGGTSLGGGIGTIAGAMIGAVLMQSL
ASGMILLGVDTPLQNIVVGIVLVVAVWLDTLYRKRVK

Sequences:

>Translated_437_residues
MTDVTSHALSKKAAAVNSSLPQRLLRATELDTRMLGMVGALAVIWIGFHIVSGGLFLTPRNLWNLSVQSASVAIMSTGMV
LVIVTRNIDLSVGSLLGFVGMVMGVTQTEILPQWLGFGHLAIWIAAILVGVALGALIGAMQGYIIAYLAVPSFIVTLGGL
LVWRGAAWWVTSGRTVAPLDATYRLMGGGPDGAIGAFWSWVVGLIACVALLLMLANGRKQRRKFHFPLRPVWAESLLAVM
GCAFILGAVAVANSYPWPSAIVRRYATENNITVPEGGLFIAHGIAIPVLIAVGVGVVMTFLANRTRFGRYVFAIGGNPEA
AVLAGINTRWVTMKVFILMGALVGISSAISTARLNAATNAMGTLDELLVIAAAVIGGTSLGGGIGTIAGAMIGAVLMQSL
ASGMILLGVDTPLQNIVVGIVLVVAVWLDTLYRKRVK
>Mature_436_residues
TDVTSHALSKKAAAVNSSLPQRLLRATELDTRMLGMVGALAVIWIGFHIVSGGLFLTPRNLWNLSVQSASVAIMSTGMVL
VIVTRNIDLSVGSLLGFVGMVMGVTQTEILPQWLGFGHLAIWIAAILVGVALGALIGAMQGYIIAYLAVPSFIVTLGGLL
VWRGAAWWVTSGRTVAPLDATYRLMGGGPDGAIGAFWSWVVGLIACVALLLMLANGRKQRRKFHFPLRPVWAESLLAVMG
CAFILGAVAVANSYPWPSAIVRRYATENNITVPEGGLFIAHGIAIPVLIAVGVGVVMTFLANRTRFGRYVFAIGGNPEAA
VLAGINTRWVTMKVFILMGALVGISSAISTARLNAATNAMGTLDELLVIAAAVIGGTSLGGGIGTIAGAMIGAVLMQSLA
SGMILLGVDTPLQNIVVGIVLVVAVWLDTLYRKRVK

Specific function: Part of the binding-protein-dependent transport system for D-xylose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4214

COG function: function code G; ABC-type xylose transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789992, Length=407, Percent_Identity=35.3808353808354, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI1788896, Length=183, Percent_Identity=35.5191256830601, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI1790524, Length=152, Percent_Identity=38.8157894736842, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1790191, Length=131, Percent_Identity=43.5114503816794, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI145693152, Length=156, Percent_Identity=34.6153846153846, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI87082395, Length=235, Percent_Identity=31.4893617021277, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1788471, Length=135, Percent_Identity=38.5185185185185, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 45811; Mature: 45680

Theoretical pI: Translated: 10.84; Mature: 10.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDVTSHALSKKAAAVNSSLPQRLLRATELDTRMLGMVGALAVIWIGFHIVSGGLFLTPR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCC
NLWNLSVQSASVAIMSTGMVLVIVTRNIDLSVGSLLGFVGMVMGVTQTEILPQWLGFGHL
CHHEEEECHHHEEEEECCEEEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHH
AIWIAAILVGVALGALIGAMQGYIIAYLAVPSFIVTLGGLLVWRGAAWWVTSGRTVAPLD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEECCC
ATYRLMGGGPDGAIGAFWSWVVGLIACVALLLMLANGRKQRRKFHFPLRPVWAESLLAVM
HHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHH
GCAFILGAVAVANSYPWPSAIVRRYATENNITVPEGGLFIAHGIAIPVLIAVGVGVVMTF
HHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHH
LANRTRFGRYVFAIGGNPEAAVLAGINTRWVTMKVFILMGALVGISSAISTARLNAATNA
HHCCCCCCCEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MGTLDELLVIAAAVIGGTSLGGGIGTIAGAMIGAVLMQSLASGMILLGVDTPLQNIVVGI
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHH
VLVVAVWLDTLYRKRVK
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TDVTSHALSKKAAAVNSSLPQRLLRATELDTRMLGMVGALAVIWIGFHIVSGGLFLTPR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCC
NLWNLSVQSASVAIMSTGMVLVIVTRNIDLSVGSLLGFVGMVMGVTQTEILPQWLGFGHL
CHHEEEECHHHEEEEECCEEEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHH
AIWIAAILVGVALGALIGAMQGYIIAYLAVPSFIVTLGGLLVWRGAAWWVTSGRTVAPLD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEECCC
ATYRLMGGGPDGAIGAFWSWVVGLIACVALLLMLANGRKQRRKFHFPLRPVWAESLLAVM
HHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHH
GCAFILGAVAVANSYPWPSAIVRRYATENNITVPEGGLFIAHGIAIPVLIAVGVGVVMTF
HHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHH
LANRTRFGRYVFAIGGNPEAAVLAGINTRWVTMKVFILMGALVGISSAISTARLNAATNA
HHCCCCCCCEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MGTLDELLVIAAAVIGGTSLGGGIGTIAGAMIGAVLMQSLASGMILLGVDTPLQNIVVGI
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHH
VLVVAVWLDTLYRKRVK
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; xylose [Periplasm]; H2O [C]

Specific reaction: ATP + xylose [Periplasm] + H2O = ADP + phosphate + xylose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]