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The map label for this gene is ybiS [C]

Identifier: 110635323

GI number: 110635323

Start: 3260010

End: 3261482

Strand: Reverse

Name: ybiS [C]

Synonym: Meso_2994

Alternate gene names: 110635323

Gene position: 3261482-3260010 (Counterclockwise)

Preceding gene: 110635324

Following gene: 110635321

Centisome position: 73.92

GC content: 63.14

Gene sequence:

>1473_bases
TTGAAGAAGTATCCTCTGGCATTTCTCTCCCTCCTTTCCGCGCCGGCCTTCGCGGCACCGGCCTGGGATGTCGGGGAACG
TGCGCCGAGGCAGGAAGAAGCTGCGGTTCAACTCGCGCAGGCCTATGATTTCGACGTTTATATCGACCAGTACGGGCGCG
AGGTGATCGTCGACCCGCGCACGGGACAAGTCGTGGAGATCAGGACGCCGCTTGGCGAGGTCCTGCCGCCCGAGCCAAGG
CGCGAGCAGCGGGACCGTCAGCTGGGGCGGCGTGATTATGACTTTACCGATCCGCGGGATGTGGAGCGGTTTCACCGCGA
CCGCGAAGCCGCCATCGCGCGAGGCTGGCAGCAGCCATATGAACGAGACTACCAAGATCCCAACTACCCGCCCGCGCGTG
GATATCCCTATGAGGAACGAGACTACGGTTACCGGGGATATCCGCCGGCGGAACCGGACTATACTCAACCGCGGGACGAC
AGCATCGCGCGTTCGCCCCTCGGCCCGCCCGACCAGGGCCTTCCCGCCGCTCCGCAGCCCGGCACGGAACCGGTGCCCGG
AATGCCCGGCGCTTCGCCGGGCACGACGCTTCCGAACGGGCCGAGCATCGTGGTGCCTGGCGCGCGGCGCGCCAGCGAGG
ACGTGGCGGCCTACCAGATCCTGCTGGACCGCGCAGGCGTTTCTCCCGGGGTGATCGACGGTCACATCGGCGACAATGTC
AACAAGGCGATCGACGCTTATTACGAAGTTACCGGCCAGAGGCTGAAGACCTATGACAAGGAGTGGATCGAGGCGGAGCT
TCAGAGGACAGGCGGGCCCGCCTTCACCGAATACACCATCACCTCGGAAGACGCCGCAGGTCCTTTCATCGCGTCGGTTC
CGGAGGATTACAGCGAGAAGGCGCAGCTTGAACGGTTGAGCTACACGCGGGTGAGCGAGATGCTCGCAGAACGCTTCCAC
ATGGATGAGAAATTCCTGATCGATCTCAATCCCGGCGCCAATTTCAACCGTCCGGGCACCATCATCAAGGTCGCCAATCC
CGGCCAGCCGGCCAAAAGCGCGGTCGCGCGGATCGTCGCGGATAAGAGCCGGAAGCAAGTGCGCCTTTTCGACGAGGGAG
GGCGGCTGATCGGCGTCTATCCGGCGACCATCGGTTCAAGCGACACCCCGTCTCCGACAGGCATCCACCAGGTGGAGCGC
GTGGCGCTGAATCCGAACTACACCTATGATCCCCGGAAGAACTTCAAGCAGGGAAACAATGACAAGGTCCTGACCATTCC
GCCCGGACCCAACGGCCCTGTCGGCTCTGTGTGGATCGCACTCTCCAAACCCACATACGGGATACATGGAACGCCTGAAC
CGTCCAAGATCGGCAAGACCTACTCCCACGGCTGTGTCCGGCTGACCAATTGGGATGCCCAGGAACTGGCCAAGCGCGTG
AAGCCCGGCGTCACGGTGGAGTTCACTGAATAA

Upstream 100 bases:

>100_bases
TAGCCATTTTCATGCCGGGTTCATCTCTTATGTCCTATCGTTTAGAAGCCGGCGCGAATCGCGCGGTGGCTGTCTTTGTC
CGTCAGTCGGGGAGCGTGGT

Downstream 100 bases:

>100_bases
CACGGTGCTCACGCACTCGGTGCATGAGCACGAACGAGGTCTCGTCTACAGTCAGTCGGATATTCCAGCCACCGGCGTGG
GGCTGGTGAAGTTTTCCTCG

Product: ErfK/YbiS/YcfS/YnhG

Products: NA

Alternate protein names: Spore protein YkuD homolog [H]

Number of amino acids: Translated: 490; Mature: 490

Protein sequence:

>490_residues
MKKYPLAFLSLLSAPAFAAPAWDVGERAPRQEEAAVQLAQAYDFDVYIDQYGREVIVDPRTGQVVEIRTPLGEVLPPEPR
REQRDRQLGRRDYDFTDPRDVERFHRDREAAIARGWQQPYERDYQDPNYPPARGYPYEERDYGYRGYPPAEPDYTQPRDD
SIARSPLGPPDQGLPAAPQPGTEPVPGMPGASPGTTLPNGPSIVVPGARRASEDVAAYQILLDRAGVSPGVIDGHIGDNV
NKAIDAYYEVTGQRLKTYDKEWIEAELQRTGGPAFTEYTITSEDAAGPFIASVPEDYSEKAQLERLSYTRVSEMLAERFH
MDEKFLIDLNPGANFNRPGTIIKVANPGQPAKSAVARIVADKSRKQVRLFDEGGRLIGVYPATIGSSDTPSPTGIHQVER
VALNPNYTYDPRKNFKQGNNDKVLTIPPGPNGPVGSVWIALSKPTYGIHGTPEPSKIGKTYSHGCVRLTNWDAQELAKRV
KPGVTVEFTE

Sequences:

>Translated_490_residues
MKKYPLAFLSLLSAPAFAAPAWDVGERAPRQEEAAVQLAQAYDFDVYIDQYGREVIVDPRTGQVVEIRTPLGEVLPPEPR
REQRDRQLGRRDYDFTDPRDVERFHRDREAAIARGWQQPYERDYQDPNYPPARGYPYEERDYGYRGYPPAEPDYTQPRDD
SIARSPLGPPDQGLPAAPQPGTEPVPGMPGASPGTTLPNGPSIVVPGARRASEDVAAYQILLDRAGVSPGVIDGHIGDNV
NKAIDAYYEVTGQRLKTYDKEWIEAELQRTGGPAFTEYTITSEDAAGPFIASVPEDYSEKAQLERLSYTRVSEMLAERFH
MDEKFLIDLNPGANFNRPGTIIKVANPGQPAKSAVARIVADKSRKQVRLFDEGGRLIGVYPATIGSSDTPSPTGIHQVER
VALNPNYTYDPRKNFKQGNNDKVLTIPPGPNGPVGSVWIALSKPTYGIHGTPEPSKIGKTYSHGCVRLTNWDAQELAKRV
KPGVTVEFTE
>Mature_490_residues
MKKYPLAFLSLLSAPAFAAPAWDVGERAPRQEEAAVQLAQAYDFDVYIDQYGREVIVDPRTGQVVEIRTPLGEVLPPEPR
REQRDRQLGRRDYDFTDPRDVERFHRDREAAIARGWQQPYERDYQDPNYPPARGYPYEERDYGYRGYPPAEPDYTQPRDD
SIARSPLGPPDQGLPAAPQPGTEPVPGMPGASPGTTLPNGPSIVVPGARRASEDVAAYQILLDRAGVSPGVIDGHIGDNV
NKAIDAYYEVTGQRLKTYDKEWIEAELQRTGGPAFTEYTITSEDAAGPFIASVPEDYSEKAQLERLSYTRVSEMLAERFH
MDEKFLIDLNPGANFNRPGTIIKVANPGQPAKSAVARIVADKSRKQVRLFDEGGRLIGVYPATIGSSDTPSPTGIHQVER
VALNPNYTYDPRKNFKQGNNDKVLTIPPGPNGPVGSVWIALSKPTYGIHGTPEPSKIGKTYSHGCVRLTNWDAQELAKRV
KPGVTVEFTE

Specific function: Probable enzyme that may play an important role in cell wall biology [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Spore wall. Note=Probably localized either on the surface of the outer spore membrane and/or in the inner spore coat (By similarity) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1787040, Length=183, Percent_Identity=26.2295081967213, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01476 LysM; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 54245; Mature: 54245

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKYPLAFLSLLSAPAFAAPAWDVGERAPRQEEAAVQLAQAYDFDVYIDQYGREVIVDPR
CCCCHHHHHHHHCCCCCCCCCCCHHCCCCCHHHHHHHHHHHCCCEEEEECCCCEEEECCC
TGQVVEIRTPLGEVLPPEPRREQRDRQLGRRDYDFTDPRDVERFHRDREAAIARGWQQPY
CCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ERDYQDPNYPPARGYPYEERDYGYRGYPPAEPDYTQPRDDSIARSPLGPPDQGLPAAPQP
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC
GTEPVPGMPGASPGTTLPNGPSIVVPGARRASEDVAAYQILLDRAGVSPGVIDGHIGDNV
CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEECCCCCCH
NKAIDAYYEVTGQRLKTYDKEWIEAELQRTGGPAFTEYTITSEDAAGPFIASVPEDYSEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEECCCCCHHHH
AQLERLSYTRVSEMLAERFHMDEKFLIDLNPGANFNRPGTIIKVANPGQPAKSAVARIVA
HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEECCCCCHHHHHHHHHHH
DKSRKQVRLFDEGGRLIGVYPATIGSSDTPSPTGIHQVERVALNPNYTYDPRKNFKQGNN
HCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHEEEECCCCCCCCHHHHCCCCC
DKVLTIPPGPNGPVGSVWIALSKPTYGIHGTPEPSKIGKTYSHGCVRLTNWDAQELAKRV
CEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCCHHHHHHHC
KPGVTVEFTE
CCCCEEEECC
>Mature Secondary Structure
MKKYPLAFLSLLSAPAFAAPAWDVGERAPRQEEAAVQLAQAYDFDVYIDQYGREVIVDPR
CCCCHHHHHHHHCCCCCCCCCCCHHCCCCCHHHHHHHHHHHCCCEEEEECCCCEEEECCC
TGQVVEIRTPLGEVLPPEPRREQRDRQLGRRDYDFTDPRDVERFHRDREAAIARGWQQPY
CCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ERDYQDPNYPPARGYPYEERDYGYRGYPPAEPDYTQPRDDSIARSPLGPPDQGLPAAPQP
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC
GTEPVPGMPGASPGTTLPNGPSIVVPGARRASEDVAAYQILLDRAGVSPGVIDGHIGDNV
CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEECCCCCCH
NKAIDAYYEVTGQRLKTYDKEWIEAELQRTGGPAFTEYTITSEDAAGPFIASVPEDYSEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEECCCCCHHHH
AQLERLSYTRVSEMLAERFHMDEKFLIDLNPGANFNRPGTIIKVANPGQPAKSAVARIVA
HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEECCCCCHHHHHHHHHHH
DKSRKQVRLFDEGGRLIGVYPATIGSSDTPSPTGIHQVERVALNPNYTYDPRKNFKQGNN
HCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHEEEECCCCCCCCHHHHCCCCC
DKVLTIPPGPNGPVGSVWIALSKPTYGIHGTPEPSKIGKTYSHGCVRLTNWDAQELAKRV
CEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCHHHHCCCCCCCEEEEECCCHHHHHHHC
KPGVTVEFTE
CCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA