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The map label for this gene is yfdE [H]

Identifier: 110635283

GI number: 110635283

Start: 3213632

End: 3214858

Strand: Reverse

Name: yfdE [H]

Synonym: Meso_2954

Alternate gene names: 110635283

Gene position: 3214858-3213632 (Counterclockwise)

Preceding gene: 110635284

Following gene: 110635282

Centisome position: 72.86

GC content: 60.55

Gene sequence:

>1227_bases
ATGGAAGCTACAGTAGCAGGCGCGAGCCGTGATGGGGTTGAGGCTCCTTGGTCCCGCCTTCCGGTCGTGAGGCCCGGTGA
GGGCTTCAAAATGCTCAATGGCATCAGGGTGCTGGATCTGACCACCTCTGTCGCCGGACCATACGCAACTATGCTGCTGT
CGGATTTTGGCGCCGAAATCATCAAAATCGAGCGCCCCGCGGGAGATGACGCGCGTCATTGGGGCCCTCCCTTTTTAGAC
GAGGAGGCGCTGTGGTTCACTTCGGTGAACCGCAACAAGAAAAGTGTCGTTCTGGACATGAATGAGCCAGAGGGACGAAG
GTGCTTCGAGGCGCTGGCGGCAACGGCGGATGTGGTCGTCAGCAACCAGCCGCCGAACGTTCAGCGCAAGCTGCGTCTCG
ATTATGATACGCTCAGATCCATCAACGACTCGGTCGTTTTTGTTTCGATTACCGGCTTTGGCGTTGATGGGGAGCGATCC
GATCTGACGTGCTACGACCTCATTGCCGAAGGATATTCCGGCATAATGGATATCACGGGCGCGGCAGACGGGCCGCCGCA
GAAGATCGGTGCGCCCGCCGCGGACATGCTGGCCGGGCAGGATGCGGCGATGGCTGTCATGGCGGCGCTTTTTGCCCGGC
AGACCAGCAAAAGGGGCGCCAAAATCGACATAAGCCTGGTGGAAAGCATGACGCGCTTTCTGACATGCCGCATTTCAAGC
TATCTAGGGTCTGGAGAGGTTCCGGTGCGCTCGGGTGGCACAGACAGCGTTATCGCGGTGTATCAGTGCTTCGAAACCGC
CGATCGTCCAATCACTATCGGGATCGGCTCGGACGCGATCTGGACGAGGTTTTGGGCGGGGCTGGGCGATCCCGAATACG
GAGCCCGCCCGGAGTTTGCCTCCAATACGAGACGTCGCGAGAGGCGAGACGAGATAGTTTCACATATCCAGTCCATCTTG
CGCTGCCGAACGAGCCGCGAATGGCTGGACATTTTTGCGCGGGCACGGGTGCCTGCCGGCCCCATCAACACCGTTTCGGA
CGTGGCCCACGACCGCGCACTACAGGAACGGGGCATGTTCTACACGCTAGAGGACGGCGACCGGAAGGTGCCGCAGATTG
GTCTGGGCATACGCATCGACGGTGCGTCGGCAATACCGCGGTCGGGCCCGCCACTTCTGGGCCAGCACACAGAGGAGGTG
CTGACCAGGTTTCGCGGCGCTTGTTAG

Upstream 100 bases:

>100_bases
TCTCGCGCAGCTATCTCTACAAGAAGCTTTCGGGCTGAACAAATCTGCCGGGGTTTGGCACGGTGATTGCGAAGTCTTCC
GTTGAAACGGGAGACTGATA

Downstream 100 bases:

>100_bases
TGAATTCCGGAGCGAGTGAAAGGACATCAAATGACCTACCAGCAGATCCTCTATGAAGAAGACGGACCAATCGGCACCAT
TACGCTGAATCGTCCGGACA

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 408

Protein sequence:

>408_residues
MEATVAGASRDGVEAPWSRLPVVRPGEGFKMLNGIRVLDLTTSVAGPYATMLLSDFGAEIIKIERPAGDDARHWGPPFLD
EEALWFTSVNRNKKSVVLDMNEPEGRRCFEALAATADVVVSNQPPNVQRKLRLDYDTLRSINDSVVFVSITGFGVDGERS
DLTCYDLIAEGYSGIMDITGAADGPPQKIGAPAADMLAGQDAAMAVMAALFARQTSKRGAKIDISLVESMTRFLTCRISS
YLGSGEVPVRSGGTDSVIAVYQCFETADRPITIGIGSDAIWTRFWAGLGDPEYGARPEFASNTRRRERRDEIVSHIQSIL
RCRTSREWLDIFARARVPAGPINTVSDVAHDRALQERGMFYTLEDGDRKVPQIGLGIRIDGASAIPRSGPPLLGQHTEEV
LTRFRGAC

Sequences:

>Translated_408_residues
MEATVAGASRDGVEAPWSRLPVVRPGEGFKMLNGIRVLDLTTSVAGPYATMLLSDFGAEIIKIERPAGDDARHWGPPFLD
EEALWFTSVNRNKKSVVLDMNEPEGRRCFEALAATADVVVSNQPPNVQRKLRLDYDTLRSINDSVVFVSITGFGVDGERS
DLTCYDLIAEGYSGIMDITGAADGPPQKIGAPAADMLAGQDAAMAVMAALFARQTSKRGAKIDISLVESMTRFLTCRISS
YLGSGEVPVRSGGTDSVIAVYQCFETADRPITIGIGSDAIWTRFWAGLGDPEYGARPEFASNTRRRERRDEIVSHIQSIL
RCRTSREWLDIFARARVPAGPINTVSDVAHDRALQERGMFYTLEDGDRKVPQIGLGIRIDGASAIPRSGPPLLGQHTEEV
LTRFRGAC
>Mature_408_residues
MEATVAGASRDGVEAPWSRLPVVRPGEGFKMLNGIRVLDLTTSVAGPYATMLLSDFGAEIIKIERPAGDDARHWGPPFLD
EEALWFTSVNRNKKSVVLDMNEPEGRRCFEALAATADVVVSNQPPNVQRKLRLDYDTLRSINDSVVFVSITGFGVDGERS
DLTCYDLIAEGYSGIMDITGAADGPPQKIGAPAADMLAGQDAAMAVMAALFARQTSKRGAKIDISLVESMTRFLTCRISS
YLGSGEVPVRSGGTDSVIAVYQCFETADRPITIGIGSDAIWTRFWAGLGDPEYGARPEFASNTRRRERRDEIVSHIQSIL
RCRTSREWLDIFARARVPAGPINTVSDVAHDRALQERGMFYTLEDGDRKVPQIGLGIRIDGASAIPRSGPPLLGQHTEEV
LTRFRGAC

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=377, Percent_Identity=35.2785145888594, Blast_Score=233, Evalue=3e-61,
Organism=Homo sapiens, GI300863124, Length=401, Percent_Identity=33.6658354114713, Blast_Score=224, Evalue=8e-59,
Organism=Homo sapiens, GI13376042, Length=401, Percent_Identity=30.9226932668329, Blast_Score=191, Evalue=1e-48,
Organism=Homo sapiens, GI300863126, Length=377, Percent_Identity=32.3607427055703, Blast_Score=190, Evalue=2e-48,
Organism=Homo sapiens, GI266456254, Length=379, Percent_Identity=25.8575197889182, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI42794625, Length=379, Percent_Identity=25.8575197889182, Blast_Score=120, Evalue=3e-27,
Organism=Homo sapiens, GI266458393, Length=242, Percent_Identity=27.2727272727273, Blast_Score=91, Evalue=3e-18,
Organism=Homo sapiens, GI266458397, Length=242, Percent_Identity=27.2727272727273, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI42822893, Length=145, Percent_Identity=28.9655172413793, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI266458395, Length=145, Percent_Identity=28.9655172413793, Blast_Score=70, Evalue=4e-12,
Organism=Escherichia coli, GI87082093, Length=375, Percent_Identity=32.5333333333333, Blast_Score=213, Evalue=2e-56,
Organism=Escherichia coli, GI1788717, Length=401, Percent_Identity=26.9326683291771, Blast_Score=136, Evalue=3e-33,
Organism=Escherichia coli, GI1786222, Length=257, Percent_Identity=29.9610894941634, Blast_Score=84, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI32564160, Length=360, Percent_Identity=22.7777777777778, Blast_Score=83, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI115535051, Length=330, Percent_Identity=21.8181818181818, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24648431, Length=379, Percent_Identity=38.5224274406332, Blast_Score=262, Evalue=4e-70,
Organism=Drosophila melanogaster, GI24585488, Length=346, Percent_Identity=24.8554913294798, Blast_Score=87, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 44439; Mature: 44439

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEATVAGASRDGVEAPWSRLPVVRPGEGFKMLNGIRVLDLTTSVAGPYATMLLSDFGAEI
CCCCCCCCCCCCCCCCHHHCCEECCCCCCHHHCCEEEEEEEHHHCCHHHHHHHHHCCCEE
IKIERPAGDDARHWGPPFLDEEALWFTSVNRNKKSVVLDMNEPEGRRCFEALAATADVVV
EEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHEEE
SNQPPNVQRKLRLDYDTLRSINDSVVFVSITGFGVDGERSDLTCYDLIAEGYSGIMDITG
CCCCCCCHHHEECCHHHHHCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHCCCEEEECC
AADGPPQKIGAPAADMLAGQDAAMAVMAALFARQTSKRGAKIDISLVESMTRFLTCRISS
CCCCCHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHH
YLGSGEVPVRSGGTDSVIAVYQCFETADRPITIGIGSDAIWTRFWAGLGDPEYGARPEFA
HCCCCCCEECCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCCCCCCCCCCHH
SNTRRRERRDEIVSHIQSILRCRTSREWLDIFARARVPAGPINTVSDVAHDRALQERGMF
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCE
YTLEDGDRKVPQIGLGIRIDGASAIPRSGPPLLGQHTEEVLTRFRGAC
EEECCCCCCCCEECCEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCC
>Mature Secondary Structure
MEATVAGASRDGVEAPWSRLPVVRPGEGFKMLNGIRVLDLTTSVAGPYATMLLSDFGAEI
CCCCCCCCCCCCCCCCHHHCCEECCCCCCHHHCCEEEEEEEHHHCCHHHHHHHHHCCCEE
IKIERPAGDDARHWGPPFLDEEALWFTSVNRNKKSVVLDMNEPEGRRCFEALAATADVVV
EEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHEEE
SNQPPNVQRKLRLDYDTLRSINDSVVFVSITGFGVDGERSDLTCYDLIAEGYSGIMDITG
CCCCCCCHHHEECCHHHHHCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHCCCEEEECC
AADGPPQKIGAPAADMLAGQDAAMAVMAALFARQTSKRGAKIDISLVESMTRFLTCRISS
CCCCCHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHH
YLGSGEVPVRSGGTDSVIAVYQCFETADRPITIGIGSDAIWTRFWAGLGDPEYGARPEFA
HCCCCCCEECCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCCCCCCCCCCHH
SNTRRRERRDEIVSHIQSILRCRTSREWLDIFARARVPAGPINTVSDVAHDRALQERGMF
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCE
YTLEDGDRKVPQIGLGIRIDGASAIPRSGPPLLGQHTEEVLTRFRGAC
EEECCCCCCCCEECCEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]